Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1808 ATGAAACGAGCCAATATCATCATTCTTCAATGGAGGAAATGGAGTCACCTCCAACCCAACCCCACTCCCGCTTACTTTTCCGGCAGGTGTTGCGAAACGACATGTCGTCCTACAAAGCAGGAACGATCGAAATCAAATCTCATTATAAAAGGAAATTTCCACACTCTTCTTCGCTGTCAATTTTCACCGCCTGTTTCCGCCCCCGTTGTTCTTCCGCCCACTTTTCCCCGATGGTCTCTGGTTTTCCCGACTTCAAAAACCGCCCACAGATTTCAATCCACCGGAATTCCGCCGCCAATCATGGGCTCTCTAGATAGTTCCGATGCCGGAATCGTCACCGTCGACGTCAAAACCGCCGAGAACCTCCTCCATTCCGGCTATGCTTTTCTCGACGTCAGGACTGTTGAGGAGTTCAAGGACGGGCATGTGGCGACGGAGAAGATCGTTAATATTCCGTATCTGTTAAATTCTCCAAATGGTAGGGTGAAAAATGCTCAGTTTCTGGCGGAAGTATCGGCGGTCTTTAAGAAAGACGACCGCCTCGTCGTGGGTTGTCGAAGCGGCGTCAGATCTTTGCTTGCTATTGATGATCTCCAAAATGATGGTTTCAAGCATTTGAAAGATCTAGGCGGAGGACATCTGGCTTGGTTGGAGAATGGATTACCTGTGGCTAAGCCAAAAGGGGATCTAAAACAATCGGCACACCCGCCTCTAAAGAATTCCGACTGTTTCCGCCGCCGTTCTTCCGCCAACTTTTCTCCGGCAGCATCTGATTTTTCCGACCTCAACCCGCCCACAAACTCACCATGTGCCGGAGTCGTCACCATCGATGTCGAGACGGCCAAGAAGCTGCTCGATTCCGGCTATCCTCTTCTTGACGTTAGGACAGTGGAGGAGTTCAGGAGGGGGCATGTGACGACGGAGAAAATCGTCAATATTCCTTATCAGTTCAATTCTCCAAATGGGTTAAAAATGATCGGTTTCTGGAGGAGACGTCGACGGTCTTTAAGAAAGACGACCGCTTCCTCGTGGTCTCTGCTCGCCGTTGGAGAACTCCAGACTTATGTAAATCTTTTCACTTTCAATCGGCACACCCGCCACTCAAAATCTCCTGTTGTTTCCACCGCCGTCCTTTCGCAAACTTTTCTCCGGCAGCCTCTGGTTTTTCCGACCTCAAAACCCACTCACGATCTCATCATGGCCTCCCTCGACAGTTCCAATGCCGGAGTCGTCACCGTCGACGTTGAAACGGCCAAGAAGCTGCTCGATTCCGGCTATCCTCTTCTGGACGTTAGGACTGTTGAGGAGTTCAGGAGAGGGCATGTGAAGACGGAGAAAATCGTCAATATTCCTTATCTGTTTAGTTTTGAACATGGTAGGGAAAAAAATGATCGGTTTCTAGAGGAGGTGTCGGCGGTCTTTAACACAGACGACCGCTTCCCTGTGGTTTGTGCAATTGGTATTAGGTCTCTGGAAGCCACTCAAGAACTTCAGGATAATGGTTTCAATAAGGTGAAAGATCAGGGCGGAGGGTTTGAAGCTTGGGTGAAGAATGGATTCCCAATGGCTAAGCCAAAACCATAA 1584 49.37 MKRANIIILQWRKWSHLQPNPTPAYFSGRCCETTCRPTKQERSKSNLIIKGNFHTLLRCQFSPPVSAPVVLPPTFPRWSLVFPTSKTAHRFQSTGIPPPIMGSLDSSDAGIVTVDVKTAENLLHSGYAFLDVRTVEEFKDGHVATEKIVNIPYLLNSPNGRVKNAQFLAEVSAVFKKDDRLVVGCRSGVRSLLAIDDLQNDGFKHLKDLGGGHLAWLENGLPVAKPKGDLKQSAHPPLKNSDCFRRRSSANFSPAASDFSDLNPPTNSPCAGVVTIDVETAKKLLDSGYPLLDVRTVEEFRRGHVTTEKIVNIPYQFNSPNGLKMIGFWRRRRRSLRKTTASSWSLLAVGELQTYVNLFTFNRHTRHSKSPVVSTAVLSQTFLRQPLVFPTSKPTHDLIMASLDSSNAGVVTVDVETAKKLLDSGYPLLDVRTVEEFRRGHVKTEKIVNIPYLFSFEHGREKNDRFLEEVSAVFNTDDRFPVVCAIGIRSLEATQELQDNGFNKVKDQGGGFEAWVKNGFPMAKPKP 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32961566 32975346 + CcPI632755_04g018080.1 Cco04g1808 177033

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1808 527 CDD RHOD 279 315 - -
Cco04g1808 527 CDD RHOD 416 516 - -
Cco04g1808 527 Gene3D - 104 224 IPR036873 -
Cco04g1808 527 Gene3D - 400 523 IPR036873 -
Cco04g1808 527 Gene3D - 268 342 IPR036873 -
Cco04g1808 527 ProSiteProfiles Rhodanese domain profile. 422 524 IPR001763 -
Cco04g1808 527 PANTHER THIOSULFATE SULFURTRANSFERASE 18 271 322 IPR044684 GO:0003824(InterPro)
Cco04g1808 527 SMART rhod_4 113 222 IPR001763 -
Cco04g1808 527 SMART rhod_4 413 521 IPR001763 -
Cco04g1808 527 CDD RHOD 119 216 - -
Cco04g1808 527 Pfam Rhodanese-like domain 415 517 IPR001763 -
Cco04g1808 527 Pfam Rhodanese-like domain 118 218 IPR001763 -
Cco04g1808 527 ProSiteProfiles Rhodanese domain profile. 123 225 IPR001763 -
Cco04g1808 527 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 269 315 IPR036873 -
Cco04g1808 527 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 111 223 IPR036873 -
Cco04g1808 527 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 402 525 IPR036873 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1808 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1282 Cco-Chr2:24469612 Cco04g1808 Cco-Chr4:32961566 1.70E-29 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1130 . . . . . . . . . . Cma03g00677 . Car03g00625 . Sed10g1012 . . Bhi03g00847 Tan03g2093 Cmetu04g2856 . Hepe04g1602 . . Cla01g01988 Cam01g2086 Cec04g1743 Cco04g1808 . Cmu01g1980 Cre04g1657 . . . . . . . Cme08g00942 . . . . . Bpe06g00334 . . . . . . . . . . . Bhi10g02362 . . . . . . Cla02g00101 Cam02g0107 Cec02g0108 Cco02g0100 Clacu02g0104 Cmu02g0098 Cre02g0439 . Csa06g03340 . Cme11g00109
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002828 1 2 0 0 1 1 3 2 2 1 1 1 1 2 1 2 2 2 3 1 2 2 2 1 3 3 1 4 2 3 52