Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1812 ATGCTACAAGACATGTGGAATGCTCCTCCGGGTTTCAGACCTTCCAAGTCCGCCCCTTCTTCTCCGGCCAAGCCTCTCGCCGTCTCCAGGCTTCGTCCCGATCCCTACCATGTCACTCACAAGGTTCCAGTTGGTGATACTCCCTATGTTAGGGCAAAAAATGTTCAGTTGGTGGCGAAGGATCCGGATAAGGCGATTCCTCTCTTTTGGGCCGCCATTAATGCGGGGGACAGAGTCGATAGTGCCTTGAAAGATATGGCCATTGTCATGAAACAGCAGAATCGAGCCGAAGAAGCGATTGAAGCAATTAAATCATTGCGAAATCGGTGTTCTGATCAGGCTCAGGAGTCTCTGGATAACATTCTTCTCGATCTATACAAGAGATGTGGAAGATTAGACGACCAGATAGCTCTTTTGAAGCATAAACTGTTCTTGATTCAACAAGGTTTAGCGTTTAACGGTAAGCGGACTAAAACCGCCCGATCTCAAGGGAAGAAGTTTCAAGTTTCTGTTGAGCAAGAAGCAACTAGATTACTGGGGAATTTGGGATGGGCGCTGATGCAACAAAACAACTATGTTGAAGCAGAAGATGCTTATAGGAAAGCACTTACAATTGCACCAGATAATAACAAAATGTGTAATCTTGGAATCTGTTTGATGAAACAAGGGAGAATTTCAGAGGCTAAAGAAAATCTACGTAGAGTTAAACCAGCAGTTGTAGATGGGCCAAGAGGCACAGATTCCCATCTCAAAGCTTATGAAAGAGCACAACAAATGCTCAAAGATCTCGAGTCGGAAATGATGAACAGGGGAGGTGACAGGCTCGAACAAAGGCGGTTGTTCGATGCGTTTCTTGGTTCTTCATCGATTTGGCAACCTCAGCCTTGCAAGGATCACACAACCTTACCAACATTGCCCGTCACAAATCCTGTTAGGACAATTCAAGATGATTTTGGTAATGAGAATATTGATATGAACTTGTTAGCAAACCAAATGGTTCCTCCTCCTCAACAACAGAAGTTTATCAAACAAGTTCCTTTAGGGAACTCATTGAATGTTGCTGCACAACCATTTTTTTCATCAAAATTTGTTAGTGAACCCATTAGTAAGGTTCCTTTGGGAAACCAATTTCCTGAAGGCTTGAAGAGAACAAGGTCTGGAAATGCAGCCAACTCAATGAGAGTGAGTGATATTTTGGAAATAAAAAGGCCATTTTTAGTAGAAGTAGGGAGGCCAGAAACTAAGACAAGAAGGCCATCTCCTAGCACTGAGGAGACAGATAAATGGGCAGAAATATTGCCTGATGACAATGACTTTGAAGAGGCTATTCTTGCTGCAGTTCTGGGATCAACCGATGATGAACGAGAGAAGAAAACAACCAATTCCCGTGACGCTGTCGGCGGTGGCGGCGTAATTCAGAGGAAAATTGAGAAGAGGCTCAAGGTTTTTGAAGACATTACACTTTCCTTGAGTCCAAGAGCCTAA 1485 43.77 MLQDMWNAPPGFRPSKSAPSSPAKPLAVSRLRPDPYHVTHKVPVGDTPYVRAKNVQLVAKDPDKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRNRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLFLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYVEAEDAYRKALTIAPDNNKMCNLGICLMKQGRISEAKENLRRVKPAVVDGPRGTDSHLKAYERAQQMLKDLESEMMNRGGDRLEQRRLFDAFLGSSSIWQPQPCKDHTTLPTLPVTNPVRTIQDDFGNENIDMNLLANQMVPPPQQQKFIKQVPLGNSLNVAAQPFFSSKFVSEPISKVPLGNQFPEGLKRTRSGNAANSMRVSDILEIKRPFLVEVGRPETKTRRPSPSTEETDKWAEILPDDNDFEEAILAAVLGSTDDEREKKTTNSRDAVGGGGVIQRKIEKRLKVFEDITLSLSPRA 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33003641 33005396 + CcPI632755_04g018120.1 Cco04g1812 177037

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1812 494 PANTHER PROTEIN POLLENLESS 3-LIKE 2 22 488 IPR044961 -
Cco04g1812 494 ProSiteProfiles TPR repeat profile. 176 209 IPR019734 GO:0005515(InterPro)
Cco04g1812 494 Coils Coil 89 116 - -
Cco04g1812 494 MobiDBLite consensus disorder prediction 1 29 - -
Cco04g1812 494 Gene3D Tetratricopeptide repeat domain 49 271 IPR011990 GO:0005515(InterPro)
Cco04g1812 494 Pfam Tetratricopeptide repeat 178 209 IPR019734 GO:0005515(InterPro)
Cco04g1812 494 Coils Coil 246 266 - -
Cco04g1812 494 SUPERFAMILY TPR-like 55 283 IPR011990 GO:0005515(InterPro)
Cco04g1812 494 SMART tpr_5 176 209 IPR019734 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1812 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0836 Cco-Chr3:9303813 Cco04g1812 Cco-Chr4:33003641 3.90E-72 dispersed
Cco04g1812 Cco-Chr4:33003641 Cco07g0180 Cco-Chr7:1916034 5.30E-75 dispersed
Cco04g1812 Cco-Chr4:33003641 Cco05g0401 Cco-Chr5:3291571 1.80E-78 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1140 . . . Bda10g00190 . . . . . . . . . Car07g00365 Sed10g1016 Cpe19g00868 . Bhi03g00843 Tan03g2098 Cmetu04g0501 . Hepe04g1606 . . Cla01g01991 Cam01g2090 Cec04g1747 Cco04g1812 Clacu01g2108 Cmu01g1984 Cre04g1661 . . . . Lsi01g00586 . . Cme08g00946 . Blo06g00291 . . Bpe10g00162 . . . . . Cmo07g00413 . . . . . . . . . . . . . . . . . . . . . Csa06g03344 Chy02g00557 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006467 2 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 38