Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1813 ATGGCGCCTCCCAAAGTCGATGCTGCGTACCTCAAGGAAATCGAGAAGGCCCGTAGAGACCTTCGCGCTCTAATCTTCAAGGAGAAATGCGCTCCTATTATGCTCCGATTAGCGTGGCATGATGCTGGTACTTACGACGCTGAAACGAAAACCGGCGGTCCTGATGGCTCCATCAGATTCATGGATGAATTGAACCATACTGCAAACAAGGGACTCAAAATCGCAGTTGATTTCTGTGAATCTGTGAAGGCCAGACATCCAAAAATCACATATGCAGATCTGTACCAGCTTGCTGGAGTTGTTGCTGTGGAGATCACTGGAGGGCCATCCATTGACTTTGTCCCCGGAAGAAAGGACGCAAATGTCGTGCCAGAAGAAGGCCGCCTGCCAGATGCCAACCAAGGTGCTTCCCATTTAAGAGATGTATTTTACAGGATGGGATTGACTGACAAGGATATCGTGGCATTATCTGGGGGACACACGTTGGGAAGAGCACACAAGGATAGATCAAATTTTGAAGGCCCATGGACAAAGGACCCTCTGAAGTTTGATAACTCCTACTTTGTGGAATTGCTGAAAAATGACTCTCGATCCAAGGAACAACTATTGAAGCTTCCTACAGACAAGGCCTTGGTTGAGGATCCTCGGTTTTCCCAATATGTGAAGGCATATGCAAAGGATGAAGACAAGTTTTTCGAGGATTATGCAGCATCTCACAAGAAACTGTCTGAGCTTGGCTTCACTAAACCTTCAACGGGTCTCAAGAGCAGCACCTCCTCCTCATGGGCAAATAAAATTCTTGTAGCTGCAATCGTAGCTGTTGTGGCGATACTGAGTTATAAAAGAGCCATGTCGCCTGAGGGGGATGCCTTTCTTCCTACTCTCTTTTGA 891 47.14 MAPPKVDAAYLKEIEKARRDLRALIFKEKCAPIMLRLAWHDAGTYDAETKTGGPDGSIRFMDELNHTANKGLKIAVDFCESVKARHPKITYADLYQLAGVVAVEITGGPSIDFVPGRKDANVVPEEGRLPDANQGASHLRDVFYRMGLTDKDIVALSGGHTLGRAHKDRSNFEGPWTKDPLKFDNSYFVELLKNDSRSKEQLLKLPTDKALVEDPRFSQYVKAYAKDEDKFFEDYAASHKKLSELGFTKPSTGLKSSTSSSWANKILVAAIVAVVAILSYKRAMSPEGDAFLPTLF 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33006412 33010307 - CcPI632755_04g018130.1 Cco04g1813 177038

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1813 296 CDD ascorbate_peroxidase 4 250 - -
Cco04g1813 296 ProSiteProfiles Plant heme peroxidase family profile. 89 253 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1813 296 FunFam Cytosolic ascorbate peroxidase 17 134 - -
Cco04g1813 296 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 10 256 IPR044831 GO:0000302(PANTHER)|GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0009507(PANTHER)|GO:0034599(InterPro)|GO:0034599(PANTHER)|GO:0042744(PANTHER)
Cco04g1813 296 Gene3D - 17 246 - -
Cco04g1813 296 ProSitePatterns Peroxidases proximal heme-ligand signature. 152 162 IPR019793 -
Cco04g1813 296 FunFam L-ascorbate peroxidase, cytosolic 130 239 - -
Cco04g1813 296 SUPERFAMILY Heme-dependent peroxidases 7 251 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1813 296 PRINTS Haem peroxidase superfamily signature 89 106 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1813 296 PRINTS Haem peroxidase superfamily signature 152 167 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1813 296 PRINTS Haem peroxidase superfamily signature 31 45 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1813 296 PRINTS Haem peroxidase superfamily signature 107 119 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1813 296 PRINTS Haem peroxidase superfamily signature 176 191 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1813 296 Gene3D Peroxidase, domain 2 130 239 - -
Cco04g1813 296 ProSitePatterns Peroxidases active site signature. 31 42 IPR019794 GO:0004601(InterPro)
Cco04g1813 296 Pfam Peroxidase 18 227 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1813 296 PRINTS Plant ascorbate peroxidase signature 63 87 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1813 296 PRINTS Plant ascorbate peroxidase signature 223 247 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1813 296 PRINTS Plant ascorbate peroxidase signature 146 167 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1813 296 PRINTS Plant ascorbate peroxidase signature 128 145 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1813 296 PRINTS Plant ascorbate peroxidase signature 168 192 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1813 296 PRINTS Plant ascorbate peroxidase signature 49 59 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1813 296 PRINTS Plant ascorbate peroxidase signature 88 106 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1813 296 PRINTS Plant ascorbate peroxidase signature 10 30 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1813 296 PRINTS Plant ascorbate peroxidase signature 107 119 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1813 296 PRINTS Plant ascorbate peroxidase signature 31 46 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1813 K00434 - - csv:101220337 468.388
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2222 Cco-Chr2:34802638 Cco04g1813 Cco-Chr4:33006412 5.80E-82 dispersed
Cco03g0211 Cco-Chr3:2186126 Cco04g1813 Cco-Chr4:33006412 1.20E-86 dispersed
Cco04g1813 Cco-Chr4:33006412 Cco11g0594 Cco-Chr11:6349590 1.10E-14 dispersed
Cco02g0458 Cco-Chr2:4129367 Cco04g1813 Cco-Chr4:33006412 1.50E-112 transposed
Cco08g0718 Cco-Chr8:18755330 Cco04g1813 Cco-Chr4:33006412 2.20E-59 transposed
Cco08g1504 Cco-Chr8:26789672 Cco04g1813 Cco-Chr4:33006412 2.80E-35 transposed
Cco04g1813 Cco-Chr4:33006412 Cco08g1594 Cco-Chr8:27503485 6.10E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1143 . . . Bda10g00192 . . . . . . . . . . Sed14g1205 . Cpe10g00676 Bhi03g00841 Tan03g2100 Cmetu04g0811 . Hepe04g1608 . . Cla01g01992 Cam01g2091 Cec04g1748 Cco04g1813 Clacu01g2109 Cmu01g1985 Cre04g1662 . . . . . . . Cme08g00948 . . . . Bpe10g00164 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g03346 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002255 2 2 2 1 2 2 3 2 2 2 1 2 1 2 2 3 2 4 3 2 2 2 2 2 2 1 2 3 4 1 63