Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1814 ATGGAATTGGGAATTTTGAAATGGGGAGATGTTTGCATGAAATTGGGACGTGAGTTGGAGCGCGTTGGATTGAGACGCTTTGTGTGTCCGTACATCGCCATTTCTCCGCTTACAGAAACGGATGATTTAACGAACGGGAACCCGACCGCCGGTGGCGGGCGAGTAACAAGGAAGAAAGAGAGTAGCTTTTTTAAGCACGAGTTTGACAGTGTCCTGAACCACCACCACCACCACCAGTGGAAGATCTCCCATTTTAGCCACCCTCATCGGAATGTGGAGATCGGCGGAAGATCGGAAATAGAAAACCGCCCGAGTTTTGTTCTGTTCTTGAAAAGTTTCTTTCTGCTTGAGATTTTGGCCAAAGAAGCTATGGGTTGCTGTTACTCGAGATTAGAAAGACAAGAAACTGTGTCGAGGTGCAAAGCAAGAAAGAGGTACATGAAACAGTTGGTGAAGGCGAGGCAAGCTTTTTCAGCTTCTCACAGCTTGTACATTCGTTCTCTTCGCGGCACCGGTGCCGCTCTCCGGCAGTTTTCCAATGCAGAGACCTACATTCGCCGCCCTCAGCAGCAGCAGCAGCAGCAGCAGAACTACCACCACCACCTCCCGCCGGTGCTTCCATCTCCAACCCCACGAACTCCGCCTCCGCCTCCGCCTCCACATATCCCCATGAGTCCTAGTTCCGACACCTGGACTTCGATCACAGCCTCCCCGGCACTACCTCCGCCGCCGCCGCCGCCGCCGTCATCCACTTGGGATTTCTGGGACCCTTTTGTGCCGTCGACATCTCGCACTGTGACTGAGGAAGAATGGGAGGCCACCACCATCGCATCGGAAGCTATGGTCACTGTAACAGGGGCGGCGAGCTCAGCACCGCCGCCGTCAGTGGTGAGTGGTTTTTCAAAGGACACTTCAAGCACTGAGCTTGCTATGGTAGTGTCGAGGAACACCAAAGATCTGGTGGAGATTATTAAGGAGCTTGATGAGTACTTTCTCAAAGCTGCTGACGCTGGTGCTCAGCTCTCTTTGCTTTTGGAAGTCCCCACTTTTTCTCAGAATAGAGGAGGGCAGATATACAGTAATGGGTGGAGCTTGAGCCCTTCGTTGAGGGTGTGGGGTTCAAACACAAAACCAAATGATGCATTTGGTAAGTTAAACGGAGAAATAACAGCAACAAATATGGGAAATGGGTGTGTTGGAAATAGCAGCAGCCACTGTTCAACAGTGGAGAAGCTGTACGCTTGGGAGAAAAAACTGTACCAAGAGGTCAAGACTGCCGAGGCCACAAGGATAGAGCATGAAAAGAAGGTGGAGCAGTTGAGGAAGCTAGAGCTGAAGAGGGCTGACTATGTAAAGACTGAGAAGACTAAGAAAGAGGTTGAAAAGCTGGAGTCACAAATGATGGTTGCTTCTCAGGCCATTGAAACCACGTCTGCTGAAATCATCAAGCTAAGAGAAATTGAGCTCTATCCACAGCTCCTTGAGCTTGTCAAAGGATTGATGTGCATGTGGAGAAGTATGTACGAGTCTCATCAGGTCCAAACACACATTGTTGAACAGCTCAAATATCTAAATATCATACCATCTGCGGAGCCAACATCCGAGATTCACCACCAATCAACTCTCCAGCTTGAGCTTGAAGTCCAGCAATGGCATGCCTCTTTTTGCAATCTAGTGAAAGCTCAACGGGATTATGTGCAATCTCTTACAGGCTGGCTCCGGCTTTGCCTTTTTCAGATAAGTGGAAACCCATTATTAAGAACAGGTCAAGATTCTAGAATCTACTCACTGTGTGAAGAATGGAATCTCGCAGTTGATAGGATTCCAGACAAAGTGGCTTCTGAAGGAATCAAGAACTTCTTAACCGTAGTTCATGCCATTGTTGTTCAACAAGCTGAGGAATATAGGCAAAAGAAGAAGGCAGATTCTGCCTCAAAAGAGCTTGAAAAGAGAGCTACTGAGCTAAGATCACTAGAGGGCAAATATGTCTCGCATTCAATGCGAGAATGCTCGGCATCGACCAGAGGGAGAGATCCAGTTCAGGAGAAGCAAAACAAGGTGGATAATTTGAGAACAAAAGCTCAAGATGAGAAACAAAAGCATGAAAACTTAGTCAGTGTAACAAGGTCAATGACAATAAATAACTTGCAGATGAGTTTTCCCCATGTTTTCCAGGCAATGGTTGGGTTTTCCAGCGTATGTATGCATGCATACGAGGCAGTTTACAATCAAACTAAAAATCCTGACCAGCATGAGGTGAAGAGATTACTACCTTAA 2277 47.61 MELGILKWGDVCMKLGRELERVGLRRFVCPYIAISPLTETDDLTNGNPTAGGGRVTRKKESSFFKHEFDSVLNHHHHHQWKISHFSHPHRNVEIGGRSEIENRPSFVLFLKSFFLLEILAKEAMGCCYSRLERQETVSRCKARKRYMKQLVKARQAFSASHSLYIRSLRGTGAALRQFSNAETYIRRPQQQQQQQQNYHHHLPPVLPSPTPRTPPPPPPPHIPMSPSSDTWTSITASPALPPPPPPPPSSTWDFWDPFVPSTSRTVTEEEWEATTIASEAMVTVTGAASSAPPPSVVSGFSKDTSSTELAMVVSRNTKDLVEIIKELDEYFLKAADAGAQLSLLLEVPTFSQNRGGQIYSNGWSLSPSLRVWGSNTKPNDAFGKLNGEITATNMGNGCVGNSSSHCSTVEKLYAWEKKLYQEVKTAEATRIEHEKKVEQLRKLELKRADYVKTEKTKKEVEKLESQMMVASQAIETTSAEIIKLREIELYPQLLELVKGLMCMWRSMYESHQVQTHIVEQLKYLNIIPSAEPTSEIHHQSTLQLELEVQQWHASFCNLVKAQRDYVQSLTGWLRLCLFQISGNPLLRTGQDSRIYSLCEEWNLAVDRIPDKVASEGIKNFLTVVHAIVVQQAEEYRQKKKADSASKELEKRATELRSLEGKYVSHSMRECSASTRGRDPVQEKQNKVDNLRTKAQDEKQKHENLVSVTRSMTINNLQMSFPHVFQAMVGFSSVCMHAYEAVYNQTKNPDQHEVKRLLP 758
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33010610 33016505 + CcPI632755_04g018140.1 Cco04g1814 177039

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1814 758 Coils Coil 638 661 - -
Cco04g1814 758 MobiDBLite consensus disorder prediction 204 225 - -
Cco04g1814 758 MobiDBLite consensus disorder prediction 186 255 - -
Cco04g1814 758 Pfam Protein of unknown function (DUF632) 320 625 IPR006867 -
Cco04g1814 758 MobiDBLite consensus disorder prediction 186 201 - -
Cco04g1814 758 MobiDBLite consensus disorder prediction 237 253 - -
Cco04g1814 758 MobiDBLite consensus disorder prediction 671 700 - -
Cco04g1814 758 Coils Coil 423 446 - -
Cco04g1814 758 MobiDBLite consensus disorder prediction 669 700 - -
Cco04g1814 758 Coils Coil 453 480 - -
Cco04g1814 758 Pfam Protein of unknown function (DUF630) 124 182 IPR006868 -
Cco04g1814 758 Coils Coil 680 700 - -
Cco04g1814 758 PANTHER UNCHARACTERIZED 124 747 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1814 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1814 Cco-Chr4:33010610 Cco09g0209 Cco-Chr9:1860908 2.20E-48 dispersed
Cco03g0813 Cco-Chr3:8802668 Cco04g1814 Cco-Chr4:33010610 1.40E-75 transposed
Cco06g0252 Cco-Chr6:2721062 Cco04g1814 Cco-Chr4:33010610 7.10E-08 transposed
Cco02g1308 Cco-Chr2:24825880 Cco04g1814 Cco-Chr4:33010610 1.70E-53 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1147 . . . . . . . . . . Cma03g00671 Cma07g00413 Car03g00617 Car07g00363 . Cpe19g00870 Cpe10g00677 Bhi03g00838 . . . . . . Cla01g01993 Cam01g2092 Cec04g1749 Cco04g1814 . Cmu01g1986 Cre04g1663 Cone8ag0861 Cone12ag0824 . . Lsi01g00583 . . Cme08g00949 Blo05g00705 . . . . Bpe06g00133 . . . Cmo03g00696 Cmo07g00409 . Cma20g00739 . . . . . . . . . . . . . . . . . . . Csa06g03347 Chy02g00554 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007876 1 3 1 1 1 1 2 1 1 1 1 0 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36