Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1824 ATGGCCTCCTTTGCTGTGGTGCTATTCTCACACTTTGCAATTCTTTTGCTGTCTGTGTTGTCTTTGGGAAGTTCACTGAGCTTAGACTACTACGAGAAGACTTGCCCCGGTGCTGACTTTATCGTGACCAAAGCTGTCAGGTATGCAGCTTACAAAGACAAGACTGTGCCTGCTGCGCTCCTCCGGATGCACTTTCATGACTGCTTTATTAGGGGTTGTGATGCATCTGTACTGCTGAATTCAGTAGGGAACAACAAAGCAGAGAAAGATGGTCCGCCTAATTTGTCTTTGCACTCATTTTTTGTGATCGACAACGCGAAGAAAGAACTGGAATCCTATTGCCCTGGTGTTGTCTCTTGTGCTGATATCTTGGCTCTGGCTGCAAGGGATGCAGTTGTGCTTTCTGGAGGTCCAACATGGGATGTTCCTAAAGGGAGAAAGGATGGAAGGATATCAAAGGCTAGTGAAACAATACAATTGCCATCTCCAAGCTTCAACATTTCTCAGCTGCAACAGAGCTTCTCCCAAAGAGGATTATCCTTGGACGACCTAGTTGCTCTTTCAGGAGCACACACCTTAGGATTTGCTCATTGCTCATCCTTTCAAGGTAGAATCCGCAACTTCAGTCCAGCCAGCAACGTCGACCCAGAAATGAATCCATCCTTCGCAGCAAGTCTAAGAAACATGTGCCCAGTGAAAAACAAGGCAAAAAATGCTGGCTCTAACATGGATACTTCTCCAACCACATTTGACAACAATTACTACAGACTGATACTCCAAAATAAGGGCCTGTTTTCTGCTGATCAAGCTCTGCTCAGCTTTCCCAAGACCAAGAATCTTGTTTATAAGTTTGCAAGCTCAAAGGAAGCTTTTAACCGTGCATTTGTTAATTCTATGATCAAGATGAGTAGCATTACTGGAGGTCAGGAGATCAGGAAGAATTGTAGGGCAGTGAACTAA 960 44.69 MASFAVVLFSHFAILLLSVLSLGSSLSLDYYEKTCPGADFIVTKAVRYAAYKDKTVPAALLRMHFHDCFIRGCDASVLLNSVGNNKAEKDGPPNLSLHSFFVIDNAKKELESYCPGVVSCADILALAARDAVVLSGGPTWDVPKGRKDGRISKASETIQLPSPSFNISQLQQSFSQRGLSLDDLVALSGAHTLGFAHCSSFQGRIRNFSPASNVDPEMNPSFAASLRNMCPVKNKAKNAGSNMDTSPTTFDNNYYRLILQNKGLFSADQALLSFPKTKNLVYKFASSKEAFNRAFVNSMIKMSSITGGQEIRKNCRAVN 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33083424 33084765 - CcPI632755_04g018240.1 Cco04g1824 177049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1824 319 Pfam Peroxidase 43 286 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1824 319 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1824 319 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1824 319 PRINTS Haem peroxidase superfamily signature 118 135 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1824 319 PRINTS Haem peroxidase superfamily signature 136 148 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1824 319 PRINTS Haem peroxidase superfamily signature 243 258 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1824 319 ProSiteProfiles Plant heme peroxidase family profile. 25 319 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1824 319 SUPERFAMILY Heme-dependent peroxidases 26 319 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1824 319 PRINTS Plant peroxidase signature 297 310 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1824 319 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1824 319 PRINTS Plant peroxidase signature 136 151 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1824 319 PRINTS Plant peroxidase signature 98 111 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1824 319 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1824 319 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1824 319 PRINTS Plant peroxidase signature 257 274 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1824 319 PRINTS Plant peroxidase signature 117 127 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1824 319 PRINTS Plant peroxidase signature 241 256 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1824 319 PANTHER PEROXIDASE 25-RELATED 20 315 IPR000823 GO:0004601(InterPro)|GO:0004601(PANTHER)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Cco04g1824 319 FunFam Peroxidase 161 302 - -
Cco04g1824 319 Gene3D Peroxidase, domain 2 161 302 - -
Cco04g1824 319 FunFam Peroxidase 29 172 - -
Cco04g1824 319 Gene3D - 29 319 - -
Cco04g1824 319 CDD secretory_peroxidase 29 318 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cco04g1824 319 ProSitePatterns Peroxidases proximal heme-ligand signature. 183 193 IPR019793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1824 Cco-Chr4:33083424 Cco08g1594 Cco-Chr8:27503485 7.80E-120 dispersed
Cco05g1836 Cco-Chr5:27336552 Cco04g1824 Cco-Chr4:33083424 3.30E-65 transposed
Cco02g1316 Cco-Chr2:24978794 Cco04g1824 Cco-Chr4:33083424 3.20E-63 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1824 K00430 - csv:101217954 596.275