Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1830 ATGTTATCCAGCTTGATGAACTTTCTGAGGGCTTGCTGGGTGCCGTCCTCGGACAGTATCGTACACAGTGGTTCAGATTCAGCAGGCCGTCATGAAGGCTTGCTATGGTACAAGGATATTGGACAGCACATGAATGGGGAATTTTCAATGGCTGTAGTCCAGGCCAATAACTTGCTTGAGGATCAGAGCCAGATCGAATCGGGTTCATTGAGCTTGCTCGACTCCGGGCCATATGGTACCTTTATTGGTGTCTATGATGGCCATGGTGGGCCTGAAGCATCAAATTACGTATATGAGAATCTTTTTCAGCATCTAAAAAGGTTCGCCTCAGAACAACAATCAATGTCATCTGATGTGATAAAGAAAGCATTTCAAGCTACAGAAGAAGGATTCATTTCTTTAGTGACTAAACAGTGGCAAATGAAGCCCCAAATTGCAGCTGTTGGTTCATGTTGCCTGGTTGGTGTGATCTGTGGTGGCACCCTTTACATAGCCAACCTTGGCGATTCCCGTGCTGTGCTCGGAAGGCTCGTGCGATCAACTGAGGAGGTTATTGCCGTGCAGCTATCAGCAGAGCATAATGTCAGCATAGAATCTGTCAGAAGGGAGATGCATTCTCTGCATCCAGATGACTCACATATAGTAGTTTTGAAGCATAATGTGTGGCGAGTAAAGGGCTTAATACAGGTTTCCAGATCTATCGGTGATGCATATCTAAAGAGGGCGGAATTCAACAGGGAACCCTTGTATGCTAAGTTTAGGCTTCGTGAACCTTTCACTCGACCAATATTGAGCTGTGAACCATCAATTTCAGTGTATGAGCTTCAACCACATGATCAATTCATCATATTCGCCTCTGATGGCCTGTGGGAGCACATTAGCAATCAACAGGCTGTCGATATTATTCAAAATCACCCGCATAATGGAAGTGCTAAGAGGCTGGTAAAAGCTGCTATGCTAGAAGCAGCTAAGAAACGAGAAATGCGATATTCAGATTTGAAGGATATTGATCGTGGAGTACGCCGCCACTTTCATGATGACATCACTGTCATAGTTGTATTTCTTGACTCTAATCTTGTAAGTAGAGCGAGCTCGGTCCAAGGCCCAACCACATCTTTGAGAGGGTGTGGCGTTATCTTACCTACAAAATCTCTAGCTCGTTGTGCCACACCTACAGAACTTAACACAGGCTGA 1194 45.06 MLSSLMNFLRACWVPSSDSIVHSGSDSAGRHEGLLWYKDIGQHMNGEFSMAVVQANNLLEDQSQIESGSLSLLDSGPYGTFIGVYDGHGGPEASNYVYENLFQHLKRFASEQQSMSSDVIKKAFQATEEGFISLVTKQWQMKPQIAAVGSCCLVGVICGGTLYIANLGDSRAVLGRLVRSTEEVIAVQLSAEHNVSIESVRREMHSLHPDDSHIVVLKHNVWRVKGLIQVSRSIGDAYLKRAEFNREPLYAKFRLREPFTRPILSCEPSISVYELQPHDQFIIFASDGLWEHISNQQAVDIIQNHPHNGSAKRLVKAAMLEAAKKREMRYSDLKDIDRGVRRHFHDDITVIVVFLDSNLVSRASSVQGPTTSLRGCGVILPTKSLARCATPTELNTG 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33120802 33122754 + CcPI632755_04g018300.1 Cco04g1830 177055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1830 397 SMART PP2C_4 41 353 IPR001932 -
Cco04g1830 397 Gene3D - 37 366 IPR036457 -
Cco04g1830 397 CDD PP2Cc 48 355 IPR001932 -
Cco04g1830 397 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169(InterPro)
Cco04g1830 397 ProSiteProfiles PPM-type phosphatase domain profile. 47 355 IPR001932 -
Cco04g1830 397 Pfam Protein phosphatase 2C 80 322 IPR001932 -
Cco04g1830 397 FunFam Phosphatase 2C family protein 36 365 - -
Cco04g1830 397 PANTHER PROTEIN PHOSPHATASE 41 354 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cco04g1830 397 SUPERFAMILY PP2C-like 56 356 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0433 Cco-Chr2:3904189 Cco04g1830 Cco-Chr4:33120802 5.40E-163 dispersed
Cco02g1308 Cco-Chr2:24825880 Cco04g1830 Cco-Chr4:33120802 8.20E-162 dispersed
Cco02g1482 Cco-Chr2:27321987 Cco04g1830 Cco-Chr4:33120802 1.20E-141 dispersed
Cco04g1830 Cco-Chr4:33120802 Cco10g2062 Cco-Chr10:34000408 5.90E-141 dispersed
Cco06g0451 Cco-Chr6:4974892 Cco04g1830 Cco-Chr4:33120802 1.20E-117 transposed
Cco10g1737 Cco-Chr10:30917255 Cco04g1830 Cco-Chr4:33120802 1.40E-118 transposed
Cco10g0049 Cco-Chr10:526326 Cco04g1830 Cco-Chr4:33120802 2.40E-171 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1830 K01102 - csv:101219696 754.207