Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1834 ATGTCGGTTCCCTCGAAGAAGAAGACGTTTATTTCAATTGAAACGTTGAAAGAAGAGCGATCTACCCGATACTTTTCTTCCGATTCAAACGTTGATCATTTGAAAGAAACCTCCATTTTTGGATGGGAAGGTTCGAGCTGTAAACAGGATGTCAAGATCTTTTACACACAAAGTTCAGCAGCTACTGAAAATGGCCATTTCTTGATACGAAGACCCACTAATCTCAGTGCCCCACGTTGTGCTGCCTTGAAAAACAATCAATCAACAAAGTCCATCTTGTTGAGTTTCTGCTCACATGGAGGATTCCGAATGGGGGTTGAAGCTCTCTGTATGAAGGAAGAATTTCTGAGTGCATTTAGCGATTCTAGCCCCTTGTTTTTGGTAAGATATTTGTATTTAGTCAAAACCCATTTCGATTGTTTACTGTTTGTTTTGTTTCTTGTGTCTGTTTTTCTTGTTTTGCGGCGTTTGCTTCTTCTCTGTTTAACGGTGGGTTTTGTAGCTTTAGTTTTCATGGCGGAAAGTTTAGAAGAGGTCTATCTCCATGGCGATCTTGACCTCAAAATCTTCGAGGCTGCCGAGTTGCCTAACATGGACATTGTATCTGAGCGTCTTCGTCGTTGCTTCACAGCCTGTGGTACTCTCGATTACTCTGCCATTAAATCCGTCGCAACCAACTCCCGTTCTGCCGGCGGTGAGGGGAAAGTCCACCGCGGCCGTGGAAAAATTATCACGAGCGATCCATATGTTACCGTCCGGGTCCCTCAAGCCACCGTCGCTCGGACCCGCGTCATAAAGAATTCCCAGAATCCCTATTGGAACGAGCATTTCATTATCCCTCTTGCACAGAAAATGGCCGAGTTGGAATTCCAGGTGAAAGACGACGATGTCTTTGGCGCTGAAGTTATGGGGACGGTTAAAATCTCCGCTCAGAAAATTGCCTCCGGTGAGACAATTAGTGGGTGGTATCCGGTGCTTGGCTCAAATGGCAAGCCACCGAAGCTTGGCACTTCACTCAGAATCGAAATGAAGTTCACCTCAGTTGAAGAAAACCCGCTATATCGACACGGCATTGCTGGAGATCCCGAGCATAAGGGTGTGCGACACACTTATTTTCCTGTCAGGAAAGGCAGCTCCATGAGATTGTACCAAGATGCTCATGTGCCTGATGGGCTGCTGCCGCAGATTGAATTGGATGGAGGGAATGTTTATAGACAAGAGAAATGTTGGGAGGATATCTGCTATGCTATATCAGAGGCTCATCATATGATTTATATTGTTGGTTGGTCGGTTTTTCATAAGGTGAAGCTGGTTAGAGAGCCAACCAGGCCGTTGCCAAGAGGTGGAGATTTGACTCTTGGTGACCTCCTCAAATACAAATCAGAAGAGGGTGTCCGAGTTTTGATGCTAGTTTGGGATGATAAGACTTCTCACGATAAGTTCTTCATCAACACGGAAGGATTGATGCAGACACATGACGAGGAAACCAGAAAATTTTTCAAGCATTCTTCTGTGATCTGTGTGCTCTCACCTCGCTATCCAAGCGGCAAGCTAAGCTATGTGAAACAAAAGGTTGTAGGGACTGTCTTCACGCACCATCAAAAGTGTGTCCTAGTTGATACACAGGGATATGGTAATAATAGAAAGATAACTGCTTTTCTTGGAGGTCTTGATCTCTGTGATGGTCGATATGATACACCTGAGCATCGATTGTTCCATGACCTTGACACAGTATTTAAGGATGATTTTCATAACCCTACAATTCCTCCTGGAGCCACAGCTCCAAGGCAACCATGGCATGACTTGCACTGTCGGATTGATGGGCCAGCTGCTTATGACTTGCTTATAAACTTTGAGCAACGTTGGAACAGAGCTACAAGATGGACAGAGTTTGGCCTACGGTGCAGGAGAATTACTCATTGGCACGATGCTTTAATAAAGATAGAGCGTATTTCATGGATACTAAGCCCTCACGTAACTTTCTTAGAAGATGGTTCATTAAAAGTTCCAGAGGATGACCCTAAAGTATATGTCTCGAAGGAAGAAGATCCTGAAAATTGGCATGTTCAGATTTTTCGATCCATTGACTCTGGTTCAGTTAAAGGATTTCCAAAAGATGTCCATCTCGCCGAGTCGCAGAACCTTGTTTGTGCAAAAAACCTGGCTATTGAGAAAAGCATTGAAATGGCATATATCCAAGCTATCAGATCGGCACAACATTTCATTTATATTGAAAATCAGTATTTTATTGGATCGTCATACGGATGGCCGGGATATAAAAATGCCGGAGCTGATCATCTCATTCCCATGGAGTTGGCCCTTAAGATTGCGAGCAAAATAAGAGCCAAGGAAAGATTTGTTGTATATATTGTCATACCAATGTGGCCTGAGGGAGATCCGAATAGCGGTCCCATGCAAGAGATTCTTTATTGGCAGGGACAAACAATGCAAATGATGTATGACATTGTTGCAAGTGAACTGAAGTCATCAGAGCAACCAGATTTGCACCCTCTGGACTTTCTAAATTTTTACTGCCTTGGAAAACGGGAAGAACTTCCTGAGAATGGGCCGACTACTGATGATGCAACGGCATGTAATTCACTAAAACATCGACGGTTTATGATTTACGTGCATGCCAAGGGGATGATAGTAGATGATGAATATGTAATTATTGGGTCTGCAAATATTAACCAAAGATCTATGGCTGGAACAAAAGACACCGAGATAGCCACAGGCGCATATCAGCCGCATCACACGTGGGCGAAAAAAAAGAAACACCCACATGGTCAGATTTACGGATACAGAATGTCGTTGTGGAGCGAGCATCTTGGAATGCTCAATCCATGTTTCGAGGAGCCAGAAACTTTGGAATGTGTAAGAAAAGTCAATGGGATTGCTGAGGATAACTGGAACAGTTTCACAGCCGATGAATTCACGACATTGCAGGGTCACCTTCTCAGGTATCCGGTGCTTGTAGATGGGGACGGAAAAGTCAGCCCTCTGCCTGGACATGAAAACTTCCCTGATGTAGGGGGGAAGATAATAGGGTCTCATTCAACTGCAATTCCTGATGTTGTGACCACATAG 3087 44.15 MSVPSKKKTFISIETLKEERSTRYFSSDSNVDHLKETSIFGWEGSSCKQDVKIFYTQSSAATENGHFLIRRPTNLSAPRCAALKNNQSTKSILLSFCSHGGFRMGVEALCMKEEFLSAFSDSSPLFLVRYLYLVKTHFDCLLFVLFLVSVFLVLRRLLLLCLTVGFVALVFMAESLEEVYLHGDLDLKIFEAAELPNMDIVSERLRRCFTACGTLDYSAIKSVATNSRSAGGEGKVHRGRGKIITSDPYVTVRVPQATVARTRVIKNSQNPYWNEHFIIPLAQKMAELEFQVKDDDVFGAEVMGTVKISAQKIASGETISGWYPVLGSNGKPPKLGTSLRIEMKFTSVEENPLYRHGIAGDPEHKGVRHTYFPVRKGSSMRLYQDAHVPDGLLPQIELDGGNVYRQEKCWEDICYAISEAHHMIYIVGWSVFHKVKLVREPTRPLPRGGDLTLGDLLKYKSEEGVRVLMLVWDDKTSHDKFFINTEGLMQTHDEETRKFFKHSSVICVLSPRYPSGKLSYVKQKVVGTVFTHHQKCVLVDTQGYGNNRKITAFLGGLDLCDGRYDTPEHRLFHDLDTVFKDDFHNPTIPPGATAPRQPWHDLHCRIDGPAAYDLLINFEQRWNRATRWTEFGLRCRRITHWHDALIKIERISWILSPHVTFLEDGSLKVPEDDPKVYVSKEEDPENWHVQIFRSIDSGSVKGFPKDVHLAESQNLVCAKNLAIEKSIEMAYIQAIRSAQHFIYIENQYFIGSSYGWPGYKNAGADHLIPMELALKIASKIRAKERFVVYIVIPMWPEGDPNSGPMQEILYWQGQTMQMMYDIVASELKSSEQPDLHPLDFLNFYCLGKREELPENGPTTDDATACNSLKHRRFMIYVHAKGMIVDDEYVIIGSANINQRSMAGTKDTEIATGAYQPHHTWAKKKKHPHGQIYGYRMSLWSEHLGMLNPCFEEPETLECVRKVNGIAEDNWNSFTADEFTTLQGHLLRYPVLVDGDGKVSPLPGHENFPDVGGKIIGSHSTAIPDVVTT 1028
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33162808 33170547 + CcPI632755_04g018340.1 Cco04g1834 177059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1834 1028 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 528 563 IPR001736 GO:0003824(InterPro)
Cco04g1834 1028 Pfam C2 domain 245 325 IPR000008 -
Cco04g1834 1028 CDD C2_plant_PLD 179 346 - -
Cco04g1834 1028 FunFam Phospholipase D delta 400 644 - -
Cco04g1834 1028 Gene3D Endonuclease Chain A 697 923 - -
Cco04g1834 1028 Gene3D C2 domain 182 354 IPR035892 -
Cco04g1834 1028 Pfam Phospholipase D Active site motif 875 900 IPR001736 GO:0003824(InterPro)
Cco04g1834 1028 SUPERFAMILY Phospholipase D/nuclease 725 958 - -
Cco04g1834 1028 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 181 346 IPR035892 -
Cco04g1834 1028 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 873 900 IPR001736 GO:0003824(InterPro)
Cco04g1834 1028 Pfam Phospholipase D C terminal 949 1017 IPR024632 -
Cco04g1834 1028 SUPERFAMILY Phospholipase D/nuclease 368 632 - -
Cco04g1834 1028 Gene3D Endonuclease Chain A 398 636 - -
Cco04g1834 1028 ProSiteProfiles C2 domain profile. 211 323 IPR000008 -
Cco04g1834 1028 SMART C2_3c 184 322 IPR000008 -
Cco04g1834 1028 PANTHER PHOSPHOLIPASE D 180 1015 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Cco04g1834 1028 SMART pld_4 528 563 IPR001736 GO:0003824(InterPro)
Cco04g1834 1028 SMART pld_4 873 900 IPR001736 GO:0003824(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1647 Cco-Chr2:29092268 Cco04g1834 Cco-Chr4:33162808 1.50E-33 dispersed
Cco04g1834 Cco-Chr4:33162808 Cco06g0019 Cco-Chr6:197392 1.60E-262 dispersed
Cco04g1834 Cco-Chr4:33162808 Cco08g1583 Cco-Chr8:27393193 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1834 K01115 - csv:101217251 1678.69