Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1837 ATGAGTTCCTGTATACCTCAAGGCAACGGCTTGCTCCCGGGGTTCATCGATCCCGAACAATCAACTCCCTACTGGAACAACAAGGCCGACAATGCATGGCAGCTCACGGCAGCCACCATGGTCGGCCTCCAAACCGTTCCTGGGCTGGTCATCCTCTACGGCAGCATGGTGAAGAAAAAATGGGCTGTCAACTCTGCCTTCATGGCCCTCTATGGCTTTGCTGCAGTGCTCATCTGTTGGGTGTTGTGGGCACATCATATGGCATTTGGCGACCGATTGTTCTGGCTCATTGGTAGGCCCGGCGTAGCGCTGTCTGAAAGTTACCTTCTTTCACAGTCTACACAAGGCTGTTTTCCGATGGCTGACTATGTCTTTTTCCAGTTTGCTTTTGCTGCCATTACTGTCGTCTTACTCGCCGGGTCCTTGCTGGGAAGGATGAATTTTGGTGCATGGATGCTTTTTGTTCCAATGTGGTTAACTCTTTGTTACACTGTGGGCGCATTCTGTATATGGGGGAATGGGTTTATTCAGAAGTACCTCATTGACTACGCCGGCGGCTACGTCATTCATCTTTCTTCTGGGGTCGCTGGTTTCACTGCTGCTTACTGGGTCGGGCCACGACACTCCCAAGACAGGCAGAACTTCCCACCAAACAACATACTGCACATGGTTGGCGGTGCAGGGTTTCTTTGGATGGGTTGGACTGGATTCAATGGAGGAGCTCCATTTGCAGCAGGTCGTATTACATCGCTAGCCATTTTGAACACACATGTTTGCACCGCAACAAGTCTCTTGATCTGGGTTTCAATGGACATCATAGTATACAAGAAAAGCTCTGTGATTGGTGCTATTCAAGGGATCATCACTGGCCTTGTCTGTATCACTCCTGGTGCAGGGCTTGTAGACACTCTTGCAGCTGTGGTGATGGGCGTCCTCGCTGGTTTGGTTCCATGGTACACCATGATGGTGCTGCATAGAAGGTTGGCATTCCTTCAGTGTGTCGACGATACTCTGGGCGTCTTCCACACGCACGCTGTGGCTGGTTCCATGGGAGGACTTCTCACAGGTTTCTTTGCCAAACCCAGCCTTCTGAGAATGATGTATCCAGATTCCCTATACAGTCCAGGCTTCCTGTACGCTATCTCCGATAGAAAGCTCAAAGATGGCCTCAAACAAATCGGCATCCAGTTTGCAGGAGCACTGTTTATTACCCTCTGGAATGCCATTTTTACCAGCATTATATGTTACCTGATTAGCCATATTGTTAACTTACGGATGAAAGAAGAGGACCTGGAGATTGGTGATGATGCTGCTCACGGAGAAGAACCCTACGCATTGTGGGGTGACGGAGAGAAGATGCCATCTTCATTTCGTCTTCCACACACCCCTAGGTTTCCTTCATTATGCAGGTGGGATTAG 1419 49.75 MSSCIPQGNGLLPGFIDPEQSTPYWNNKADNAWQLTAATMVGLQTVPGLVILYGSMVKKKWAVNSAFMALYGFAAVLICWVLWAHHMAFGDRLFWLIGRPGVALSESYLLSQSTQGCFPMADYVFFQFAFAAITVVLLAGSLLGRMNFGAWMLFVPMWLTLCYTVGAFCIWGNGFIQKYLIDYAGGYVIHLSSGVAGFTAAYWVGPRHSQDRQNFPPNNILHMVGGAGFLWMGWTGFNGGAPFAAGRITSLAILNTHVCTATSLLIWVSMDIIVYKKSSVIGAIQGIITGLVCITPGAGLVDTLAAVVMGVLAGLVPWYTMMVLHRRLAFLQCVDDTLGVFHTHAVAGSMGGLLTGFFAKPSLLRMMYPDSLYSPGFLYAISDRKLKDGLKQIGIQFAGALFITLWNAIFTSIICYLISHIVNLRMKEEDLEIGDDAAHGEEPYALWGDGEKMPSSFRLPHTPRFPSLCRWD 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33179550 33181188 - CcPI632755_04g018370.1 Cco04g1837 177062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1837 472 PRINTS Rhesus blood group protein signature 252 274 IPR002229 GO:0005886(InterPro)
Cco04g1837 472 PRINTS Rhesus blood group protein signature 221 239 IPR002229 GO:0005886(InterPro)
Cco04g1837 472 PRINTS Rhesus blood group protein signature 127 143 IPR002229 GO:0005886(InterPro)
Cco04g1837 472 PRINTS Rhesus blood group protein signature 307 325 IPR002229 GO:0005886(InterPro)
Cco04g1837 472 PANTHER AMMONIUM TRANSPORTER MEP2 23 454 IPR001905 GO:0005886(PANTHER)|GO:0008519(PANTHER)|GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)|GO:0072488(PANTHER)
Cco04g1837 472 ProSitePatterns Ammonium transporters signature. 182 207 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cco04g1837 472 Pfam Ammonium Transporter Family 32 444 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cco04g1837 472 Gene3D Ammonium transporter AmtB like domains 16 447 IPR029020 -
Cco04g1837 472 SUPERFAMILY Ammonium transporter 25 426 - -
Cco04g1837 472 NCBIfam ammonium transporter 30 444 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1837 Cco-Chr4:33179550 Cco08g1469 Cco-Chr8:26536280 1.40E-162 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1837 K03320 - csv:101218977 926.391