Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1862 ATGGCGTTTTCCGATGAGAACAATCCCAGCTTGATCAAACCCACTTCATTTCTTCCAGGAGGAGGGTTGGAGAAGAGTGGGAGAGCATTTGGGCAGGAGATTAGTAGAGCTAATAATAATCGGAGAGCTCTTAATGCCATTAATCAGAATTCTGTGGTGAATCAAGCTTACCCTTGTGTTGTTAACAAGAGAGTCCTATCAGGAAAGCAAGAGATTTGCGAGAAGAAGCAGGTTGATCCATTTCATAGACCCATTACAAGGAAATTTGCTGCTCAAATTGCGAGTAGTCAACAGCTTCATCATCCTCAGGAAAATAATAAGCCTAACTCATTTCTTACAAACTCAAATGCATTTGGACATTCCATATTTGTAGACGACGATTGCAAAACAGTAGAAAATGATCATCCAGTTCCTATGTTCTTGGAGAAATCAGAACCATCATTGCCTCAGGAAGCAAGCCAGATGGAGGAGGTTGAAATGGAGGATATAGCAGAAGACGAAGACCCAGTAATCGACATCGACAGTGTCGATTCCGAGAACCCGCTTGCCGTTGTTGAGTACGTGGACGATCTCTACGCACACTATAGAAAAATCGAAAATTCAAGCTGTGTTCCCCCAAATTACATGACCAAACAAACTGACATTAATGAGAAGATGAGAGCAATACTAATTGACTGGCTTATAGAGGTGCATGACAAGTTTGATCTCATGGGAGAAACTTTGTTTCTCACTGTGAATCTCATAGACAGATTTTTGGCACAAAAAACAGTAGTGAGAAAGAAGCTTCAGCTGGTTGGTTTGGTTTCTATGCTTTTAGCTTGCAAATATGAGGAAGTTTCTGTCCCTGTTGTGGGTGATTTGATTCTTATTTCTGATAAAGCTTACTCTAGAAAAGAAGTTCTTGAAATGGAGACAGCGATGCTCAACTGTTTGCAGTTTAACATGTCAGTTCCCACACCCTTTGTTTTCCTTCAAAGGTTCCTTAAAGCTGCTCAATCTGACAAAAAGCTTGAGCTAACGGCATTCTTCTTGATCGAACTCTCGCTCGTCGAGTATGAAATGCTGAGGTTCCCACCCTCTCTCCTAGCAGCAGCGGCAATTTACACAGCTCAATGTACTCTCACCAGAGTCGATGGTTGCTGGAGCCGGACCTGTGAGTGGCATTCCAGCTACTCAGAAGATCAGCTCCTAGAATGCTCGAGACTAATGGTGGGTTTCCATCAAAAGGCGGCGACGGGGAAGCTTACCGGAGTTCATAGGAAACTCAGCAATAGCCACAGAACAGAACATAATTTATTATTATCGCTGCCGGGAGGTGTCATCGCTACCCAGAAAATCTCTGCTCCACACTTGCAACCAAATCCATCTCCGTTTACTCGCACGGTTCTCCAAAAACAATCAAAAGGAAATCTCGGATTCGCTATAGAAACATCTCTGCACTCTACCCTTCCCTGTTTCAGCATCTACATATATGGATTGGTGTTTGAGAATCTGTTGAAGCAGGGAGCCGTGAAGTCGGTGCAGTCATTGATGAATGTTCCATTCACATTAGAGAGATTAGAAATGGAGGCAAAGTTCATCCAGGAAGAAGAAAGAGAATATGGTTCAGCTCAAGGGACACAAATCAGTGAGCGGTATTTGAGCATCATATACAATACTATAGGCCTTTGCCTGGAGTTGAGAAATTGGTTGTTTTCATAA 1701 42.8 MAFSDENNPSLIKPTSFLPGGGLEKSGRAFGQEISRANNNRRALNAINQNSVVNQAYPCVVNKRVLSGKQEICEKKQVDPFHRPITRKFAAQIASSQQLHHPQENNKPNSFLTNSNAFGHSIFVDDDCKTVENDHPVPMFLEKSEPSLPQEASQMEEVEMEDIAEDEDPVIDIDSVDSENPLAVVEYVDDLYAHYRKIENSSCVPPNYMTKQTDINEKMRAILIDWLIEVHDKFDLMGETLFLTVNLIDRFLAQKTVVRKKLQLVGLVSMLLACKYEEVSVPVVGDLILISDKAYSRKEVLEMETAMLNCLQFNMSVPTPFVFLQRFLKAAQSDKKLELTAFFLIELSLVEYEMLRFPPSLLAAAAIYTAQCTLTRVDGCWSRTCEWHSSYSEDQLLECSRLMVGFHQKAATGKLTGVHRKLSNSHRTEHNLLLSLPGGVIATQKISAPHLQPNPSPFTRTVLQKQSKGNLGFAIETSLHSTLPCFSIYIYGLVFENLLKQGAVKSVQSLMNVPFTLERLEMEAKFIQEEEREYGSAQGTQISERYLSIIYNTIGLCLELRNWLFS 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33292378 33295814 - CcPI632755_04g018620.1 Cco04g1862 177087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1862 566 Gene3D - 190 426 - -
Cco04g1862 566 Pfam Cyclin, N-terminal domain 190 316 IPR006671 -
Cco04g1862 566 PANTHER CYCLINS 168 421 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cco04g1862 566 Coils Coil 517 537 - -
Cco04g1862 566 Pfam Cyclin, C-terminal domain 318 428 IPR004367 -
Cco04g1862 566 CDD CYCLIN_AtCycB-like_rpt2 318 433 - -
Cco04g1862 566 ProSitePatterns Cyclins signature. 220 251 IPR048258 -
Cco04g1862 566 SMART Cyclin_C_2 318 436 IPR004367 -
Cco04g1862 566 FunFam G2/mitotic-specific cyclin 204 311 - -
Cco04g1862 566 SUPERFAMILY Cyclin-like 317 426 IPR036915 -
Cco04g1862 566 MobiDBLite consensus disorder prediction 1 22 - -
Cco04g1862 566 FunFam G2/mitotic-specific cyclin-1 312 431 - -
Cco04g1862 566 CDD CYCLIN_AtCycB-like_rpt1 167 313 - -
Cco04g1862 566 Gene3D - 204 316 - -
Cco04g1862 566 SMART cyclin_7 322 405 IPR013763 -
Cco04g1862 566 SMART cyclin_7 225 309 IPR013763 -
Cco04g1862 566 SUPERFAMILY Cyclin-like 179 315 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1862 Cco-Chr4:33292378 Cco05g1952 Cco-Chr5:28578342 3.90E-45 dispersed
Cco04g1862 Cco-Chr4:33292378 Cco04g1866 Cco-Chr4:33318227 9.50E-60 proximal
Cco02g2416 Cco-Chr2:36566029 Cco04g1862 Cco-Chr4:33292378 1.30E-66 transposed
Cco04g0704 Cco-Chr4:21767290 Cco04g1862 Cco-Chr4:33292378 2.10E-65 transposed
Cco09g2483 Cco-Chr9:38966271 Cco04g1862 Cco-Chr4:33292378 6.80E-46 transposed
Cco11g1919 Cco-Chr11:31872970 Cco04g1862 Cco-Chr4:33292378 3.90E-123 transposed
Cco10g0033 Cco-Chr10:408173 Cco04g1862 Cco-Chr4:33292378 3.40E-09 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1862 K21777 - csv:101216622 786.949