Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1866 ATGGAGGATATAGCAGAAGACGAAGACCCAGTAATCGACATCGACAGTATCGATTCCGAGAACCCGCTTGCCGTTGTTGAGTACAATTCAAGCTGTGTTCCCCCAAATTACATGACCAAACAAACTGACATTAATGAAAAGATGAGAGCAATACTAATTGACTGGCTTATAGAGGTGCATGACAAGTTTGATCTCATGGGAGAAACTTTGTTTCTCATTGTGAATCTCAGAGACAGATTTTTGGCAGAAAAAACATTAGCGAGAAAGAAGCTTCAGCTGGTTGGTTTGGTTTCTATGCTTTTAGCTTGCAGATATGAGGAAGTTTCTGTTCCTGTTGTGGGTGATTTGATTCTTATTTCTGATAAAGCTTACTCTAGAAAAGAAGTTCTTGAATGGTACTTACTCCTCCATTTTTAA 417 38.85 MEDIAEDEDPVIDIDSIDSENPLAVVEYNSSCVPPNYMTKQTDINEKMRAILIDWLIEVHDKFDLMGETLFLIVNLRDRFLAEKTLARKKLQLVGLVSMLLACRYEEVSVPVVGDLILISDKAYSRKEVLEWYLLLHF 138
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33318227 33318762 - CcPI632755_04g018660.1 Cco04g1866 177091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1866 138 SUPERFAMILY Cyclin-like 31 135 IPR036915 -
Cco04g1866 138 PANTHER CYCLINS 12 134 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cco04g1866 138 SMART cyclin_7 54 138 IPR013763 -
Cco04g1866 138 Gene3D - 34 137 - -
Cco04g1866 138 Pfam Cyclin, N-terminal domain 30 132 IPR006671 -
Cco04g1866 138 FunFam G2/mitotic-specific cyclin 33 136 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1866 Cco-Chr4:33318227 Cco11g1919 Cco-Chr11:31872970 2.00E-43 dispersed
Cco04g1862 Cco-Chr4:33292378 Cco04g1866 Cco-Chr4:33318227 9.50E-60 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1866 K21777 - csv:101216622 229.95