Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1873 ATGATAGGCAAAATTGGAAAAATTGCTGTAGAAGCTGCTGTTGAGGATGTAAATTCTGATCCATCCATTCTGGGGGGGACAAAACTGAAGCTTAGTTTACATGATACCAATTATAGTGGATTTTTGGGCATCATTGAATCCTTGCGTTTCATGGAGACTAAGACCATGGCCATAATTGGCCCTCAAAACTCTGTTACTGCTCATGTTATATCTCATATTGCAAATGAGGTCCAAGTTCCTCTATTGTCATTTTCAGCAACAGATCCCACACTGTCATCACTTCAGTTTCCTTTCTTTATCAGAACTTCACAGAATGATCTGTATCAGATGGCTGCAGTAGCTGAAATAGTTGACTACTACCAATGGAAAGAGGTGATTGCCATATTTGTTGATGATGACCATGGTAGAAATGGTATTGCTGCATTGGGGGATCAACTTAATGAGAAACGATGCAAGATCTCATTAAAAGTACCATTGAAGCCTGATGCAAGTCGTGATGAGGTCACTAATGCACTTGTTAAGGTGGCTTTAACCGAGTCTCGGATACTTGTTGTTCACACTTATGAGACCACAGGTATGGTTGTGCTAAATGTGGCTCAATATCTTGGATTGACAGAACCCGGGTATGTGTGGATAGCCACTAACTGGCTTTCTTTGCTACTCGACACAAATTCTCCTCTTCCTTCTGCTTCTATGGAAAATATTCAAGGACTTGTTGCTTTGCGTCTTTATACACCAGATTCTGCACTCAAAAGGAATTTTGTTTCAAGGTGGACCAATTTGACTAATGGAAAGTCATCAATGGGTCCGCTTGGATTGAGTACTTATGGATTATATGCTTATGATACTGTTTGGATGCTTGCTCATGCAATAAATGCATTTCTTAATGAAGGTGGAAATCTTTCATTTTCAAAACTTTCGAAGTTATCTGGGACTGATGTTGGAACTTTGAATTTGAACTCTATGAGCGTCTTCAATGGTGGGAAGACACTACTTCACAAAATTTTAGAAGTCAATTTTACTGGAATAACAGGTTCAGTTGAGTTCACTCCAGATAGGGACTTAATTCACCCTGCATTTGAAGTGATCAATATAATCGGCACAGGGGAAAGAAGAATTGGTTATTGGTCTAACTATTCTGGCTTGTCAATTGTGCCTCCTGAAACCCTTTACTCGAAACCACCAAACCGAACCAATTCAAATCAAAAGCTATATGATGTGGTATGGCCTGGACAAGCTACACAGAAGCCTCGTGGGTGGGCATTTCCAAACAGTGGAAGATACTTGAGAATTGGAGTTCCGAGACGAGTCAGTTATCAAGAATTTGTCTCACAAGTAGAAGGAACTGACATGTTCACTGGCTACTGTGTTGATGTCTTCACTGCAGCAATCAACATGTTGCCTTATGCAGTCCCCTATAAGTTAATTCCTTTCGGGGATGGCCTTACTAATCCTAGCGAAACCGAACTTATTCGTCTAATCACAACCGGGGTCTTTGATGGAGCAATAGGTGACATTGCAATTATCACAAACCGAACCAGGATGGCAGATTTTACACAACCATACATCGAGTCTGGCCTAGTAGTTGTAGCTCCAGTCAAGAAGTTGAATTCTAGTGCTTGGGCCTTTTTACGGCCGTTCACTCCAGAGATGTGGTGTGTTACTGCTGCTTCTTTTCTTGTAGTAGGAGCAGTTGTTTGGATTTTGGAGCATAGAATAAATGATGATTTTCGTGGCCCTCCGAAGAAACAAGTTATTACTATTCTATGGTTCAGCTTTTCAACTCTATTCTTCTCCCATCGGGAAAACACAGTCAGTGCCCTTGGTCGCCTCGTGCTGCTTATATGGTTATTTGTTGTTCTAATTATCAACTCAAGCTATACTGCAAGCTTGACCTCTATCCTTACAGTTCAACAACTTTCTTCTCCTGTCAAAGGAATTGAAACTTTGATTTCAAACAACGACCCAATTGGCTACCAGCAGGGTTCATTTGCTCGAAACTACTTGATTGAGGAACTTGGCATTCATGAGTCAAGACTCGTTCCACTCATCTCAGCAGAACACTATGTCAAAGCCTTGAATGATGGGCCAGCAAATAATGGTGTTGCTGCTATAATCGATGAGCGAGCATATGTAGAGCTCTTCCTTTCAACCCGTTGCGAATACAGTATTGTTGGCCAAGAGTTCACCAAAAATGGGTGGGGATTTGCTTTCCCGCGTGACTCTCCTTTAGCAGTTGACTTGTCCACAGCTATTCTAAGACTGTCCGAAAACGGGGATCTTCAAAGGATCCATGACAAATGGTTAATGAAAAGTGCTTGCACATCACAAGCCTCCAAATTTGAGGTGGATCGACTTCAGCTCAATAGCTTTTGGGGACTTTTTCTAATATGTGGATTAGCCTGTTTGCTCGCTCTATCGATATACCTCTTTCAAATGGTGCGCCAATATAGCGAACATTACTCTGAAGAACTCGGGTCTTCTGAGCAAACCTCTCGATCTGCAAGCCTGCATAGATTCCTTTCTTTTGCAGATGAAAAGGAAGAAGTCTTCAGAAGTCGATCCAAGCAAAAACAGATGCAGGAGGCTTCAGTTAGAAGCATTAACGAAGAAATTTCCACAGGCAGTTCAAGAAAATTTGGCCATGGTTATACTGATGGTATTGATGATGCATGA 2676 41.44 MIGKIGKIAVEAAVEDVNSDPSILGGTKLKLSLHDTNYSGFLGIIESLRFMETKTMAIIGPQNSVTAHVISHIANEVQVPLLSFSATDPTLSSLQFPFFIRTSQNDLYQMAAVAEIVDYYQWKEVIAIFVDDDHGRNGIAALGDQLNEKRCKISLKVPLKPDASRDEVTNALVKVALTESRILVVHTYETTGMVVLNVAQYLGLTEPGYVWIATNWLSLLLDTNSPLPSASMENIQGLVALRLYTPDSALKRNFVSRWTNLTNGKSSMGPLGLSTYGLYAYDTVWMLAHAINAFLNEGGNLSFSKLSKLSGTDVGTLNLNSMSVFNGGKTLLHKILEVNFTGITGSVEFTPDRDLIHPAFEVINIIGTGERRIGYWSNYSGLSIVPPETLYSKPPNRTNSNQKLYDVVWPGQATQKPRGWAFPNSGRYLRIGVPRRVSYQEFVSQVEGTDMFTGYCVDVFTAAINMLPYAVPYKLIPFGDGLTNPSETELIRLITTGVFDGAIGDIAIITNRTRMADFTQPYIESGLVVVAPVKKLNSSAWAFLRPFTPEMWCVTAASFLVVGAVVWILEHRINDDFRGPPKKQVITILWFSFSTLFFSHRENTVSALGRLVLLIWLFVVLIINSSYTASLTSILTVQQLSSPVKGIETLISNNDPIGYQQGSFARNYLIEELGIHESRLVPLISAEHYVKALNDGPANNGVAAIIDERAYVELFLSTRCEYSIVGQEFTKNGWGFAFPRDSPLAVDLSTAILRLSENGDLQRIHDKWLMKSACTSQASKFEVDRLQLNSFWGLFLICGLACLLALSIYLFQMVRQYSEHYSEELGSSEQTSRSASLHRFLSFADEKEEVFRSRSKQKQMQEASVRSINEEISTGSSRKFGHGYTDGIDDA 891
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33351556 33354734 + CcPI632755_04g018730.1 Cco04g1873 177098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1873 891 Gene3D - 540 666 - -
Cco04g1873 891 Gene3D - 690 738 - -
Cco04g1873 891 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 2 849 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cco04g1873 891 Gene3D - 423 539 - -
Cco04g1873 891 Pfam Bacterial extracellular solute-binding proteins, family 3 447 548 IPR001638 -
Cco04g1873 891 CDD GluR_Plant 429 769 - -
Cco04g1873 891 Gene3D - 8 357 - -
Cco04g1873 891 Pfam Ligand-gated ion channel 771 802 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cco04g1873 891 Gene3D - 105 382 - -
Cco04g1873 891 SUPERFAMILY Periplasmic binding protein-like II 407 772 - -
Cco04g1873 891 CDD PBP1_GABAb_receptor_plant 1 386 IPR044440 -
Cco04g1873 891 PIRSF IGluLR_plant 1 884 IPR017103 -
Cco04g1873 891 SMART GluR_14 430 771 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cco04g1873 891 MobiDBLite consensus disorder prediction 857 880 - -
Cco04g1873 891 FunFam Glutamate receptor 666 773 - -
Cco04g1873 891 Gene3D - 739 769 - -
Cco04g1873 891 FunFam Glutamate receptor 424 540 - -
Cco04g1873 891 Pfam Receptor family ligand binding region 8 367 IPR001828 -
Cco04g1873 891 SUPERFAMILY Periplasmic binding protein-like I 3 420 IPR028082 -
Cco04g1873 891 MobiDBLite consensus disorder prediction 852 891 - -
Cco04g1873 891 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 3 19 - -
Cco04g1873 891 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 280 292 - -
Cco04g1873 891 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 63 91 - -
Cco04g1873 891 FunFam Glutamate receptor 105 261 - -
Cco04g1873 891 FunFam Glutamate receptor 540 670 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0355 Cco-Chr2:3228266 Cco04g1873 Cco-Chr4:33351556 5.60E-280 dispersed
Cco04g1873 Cco-Chr4:33351556 Cco08g1122 Cco-Chr8:22975868 4.50E-141 dispersed
Cco04g1873 Cco-Chr4:33351556 Cco11g1939 Cco-Chr11:32016696 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1873 K05387 - csv:101213408 1660.97