Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1885 ATGGACCGGTTATTGCGTTCCTTCATCTGGGTAAATGACATGTTTCAACAACAGAGTGCTCATAATTCAAGCTTTCTTCAAAACAACTTATTAGTTCGTGATAAGCATATACCTTCTGATGCCTGCTTGATGGATCCCGCGAAGGGAAATAATGGTACCAGCAACAACCCAAATTTGGCCTCAAAGCAGAGACTGCGATGGACACATGATCTTCACGAACGATTTGTTAATGCAGTGGCAGAACTTGGTGGTCCAGATCGTGCTACACCCAAAGGCGTCCTTAGAGTAATGGGTGTTCAAGGTTTAACAATATACCACGTCAAAAGCCACCTACAGAAATATCGACTTGCAAAATACCTTCCCGACTCCTCATCTGATGGGAAAAAGGCTGACAAGAAGGATTCTAATGATATTCTATCAAACATTGATGGCTCGTCAGGAATGCAAATTACTGAAGCACTTAAGCTGCAGATGGAGGTCCAGAAGCGACTGCATGAACAATTGGAGGTACAGAGACAGCTACAGTTACGGATTGAAGCCCAAGGCAAGTACCTAAAGAAGATAATTGAAGAGCAACAAAAACTTAGTGGAGTTCTTTCAGGAGCTCCAGTTGCATCTGCCTTTTCAGCTCCTGCTTCTGGTGATAACTGCCCAGAAACTGATAAAAATGACCCTCCAACACCTGCACCCACATCTGAGTTTCCTCGCCAAGAGAAACCATCAAAGGAACATGCCCAAGCCAAGAGTGTCTCTATTGATGATTCTTTCTCATCTCATCACGAACCGTTGACGCCAGATTCTGGTTGCCATAGCTCCCGGAGTGAGAGTCCAAGGCCAGTGAAGAAGCAAAGACAGTACAGGGATGGTGCATTTGCCAAATCAGAGATGATACTTGCACATCAGATACTGGAGTCAAGTTTAAACTCCACTCACAAGGAATCACGCTCTGTTTTTCCAGCCAGGGAAAAGTTCGATCCTTCATCTGGAATATCAATAGGGGACAACTACCAGTTAGACTAA 1020 44.31 MDRLLRSFIWVNDMFQQQSAHNSSFLQNNLLVRDKHIPSDACLMDPAKGNNGTSNNPNLASKQRLRWTHDLHERFVNAVAELGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKKADKKDSNDILSNIDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQKLSGVLSGAPVASAFSAPASGDNCPETDKNDPPTPAPTSEFPRQEKPSKEHAQAKSVSIDDSFSSHHEPLTPDSGCHSSRSESPRPVKKQRQYRDGAFAKSEMILAHQILESSLNSTHKESRSVFPAREKFDPSSGISIGDNYQLD 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33433756 33437237 - CcPI632755_04g018850.1 Cco04g1885 177110

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1885 339 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 46 310 IPR046955 GO:0003700(InterPro)
Cco04g1885 339 NCBIfam myb-like DNA-binding domain, SHAQKYF class 62 117 IPR006447 GO:0003677(InterPro)
Cco04g1885 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 119 IPR017930 -
Cco04g1885 339 Coils Coil 151 171 - -
Cco04g1885 339 MobiDBLite consensus disorder prediction 250 274 - -
Cco04g1885 339 MobiDBLite consensus disorder prediction 122 144 - -
Cco04g1885 339 MobiDBLite consensus disorder prediction 209 292 - -
Cco04g1885 339 MobiDBLite consensus disorder prediction 305 339 - -
Cco04g1885 339 FunFam Myb family transcription factor 61 119 - -
Cco04g1885 339 Gene3D - 61 120 - -
Cco04g1885 339 Pfam MYB-CC type transfactor, LHEQLE motif 148 194 IPR025756 -
Cco04g1885 339 SUPERFAMILY Homeodomain-like 61 116 IPR009057 -
Cco04g1885 339 MobiDBLite consensus disorder prediction 122 138 - -
Cco04g1885 339 Pfam Myb-like DNA-binding domain 64 115 IPR001005 -
Cco04g1885 339 MobiDBLite consensus disorder prediction 275 289 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1885 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1885 Cco-Chr4:33433756 Cco10g1671 Cco-Chr10:30106313 1.70E-43 dispersed
Cco04g1885 Cco-Chr4:33433756 Cco04g1886 Cco-Chr4:33440664 1.50E-20 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco05g0383 . 12 267 G2-like Transcription Factor Family AT3G24120 63.9 1.3e-79 293.5
Cco02g2008 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.4e-40 162.2
Cco07g0226 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 9.8e-40 161.0
Cco09g2488 . 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.3e-39 160.6
Cco04g1886 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.5e-37 152.5
Cco05g1222 . 248 448 G2-like Transcription Factor Family AT5G16560 57.3 1.4e-44 177.6
Cco09g1174 . 196 357 G2-like Transcription Factor Family AT5G16560 58.0 4.7e-37 152.5
Cco05g2205 . 1 167 G2-like Transcription Factor Family AT5G42630 58.3 1.5e-40 163.3
Cco08g1731 . 52 138 G2-like Transcription Factor Family AT5G42630 83.9 1.3e-36 150.2
Cco08g0647 . 20 258 G2-like Transcription Factor Family AT1G25550 54.9 8.5e-54 207.6
Cco05g2566 . 19 256 G2-like Transcription Factor Family AT1G25550 55.8 3.2e-53 205.7
Cco05g2566 . 19 352 G2-like Transcription Factor Family AT1G68670 50.6 5.9e-68 255.0
Cco03g0134 . 1 269 G2-like Transcription Factor Family AT3G46640 52.0 6.4e-61 231.5
Cco04g0701 . 1 301 G2-like Transcription Factor Family AT5G05090 57.1 4.2e-74 275.0
Cco10g1632 . 1 283 G2-like Transcription Factor Family AT5G05090 53.8 6.9e-69 257.7
Cco05g0383 . 12 315 G2-like Transcription Factor Family AT4G13640 58.0 3.0e-65 245.7
Cco05g0383 . 12 267 G2-like Transcription Factor Family AT3G24120 63.9 1.3e-79 293.5
Cco02g2008 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.4e-40 162.2
Cco07g0226 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 9.8e-40 161.0
Cco09g2488 . 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.3e-39 160.6
Cco04g1886 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.5e-37 152.5
Cco11g0984 . 1 228 G2-like Transcription Factor Family AT1G69580 55.6 2.4e-50 196.4
Cco09g2488 . 1 382 G2-like Transcription Factor Family AT1G79430 54.9 3.7e-86 315.5
Cco02g2008 . 1 181 G2-like Transcription Factor Family AT1G79430 85.2 2.8e-73 272.7
Cco05g0383 . 39 203 G2-like Transcription Factor Family AT1G79430 61.2 3.4e-39 159.5
Cco04g1885 . 97 339 G2-like Transcription Factor Family AT2G01060 62.3 5.9e-56 214.5
Cco04g0701 . 1 301 G2-like Transcription Factor Family AT3G10760 63.0 1.2e-91 333.6
Cco10g1632 . 1 283 G2-like Transcription Factor Family AT3G10760 58.4 2.8e-83 305.8
Cco04g0701 . 1 203 G2-like Transcription Factor Family AT2G40970 60.2 2.4e-60 229.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008809 1 2 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 0 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59124 PF00249 Myb_DNA-binding 8.20E-08 CL0123 Cco TF