Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1885 ATGGACCGGTTATTGCGTTCCTTCATCTGGGTAAATGACATGTTTCAACAACAGAGTGCTCATAATTCAAGCTTTCTTCAAAACAACTTATTAGTTCGTGATAAGCATATACCTTCTGATGCCTGCTTGATGGATCCCGCGAAGGGAAATAATGGTACCAGCAACAACCCAAATTTGGCCTCAAAGCAGAGACTGCGATGGACACATGATCTTCACGAACGATTTGTTAATGCAGTGGCAGAACTTGGTGGTCCAGATCGTGCTACACCCAAAGGCGTCCTTAGAGTAATGGGTGTTCAAGGTTTAACAATATACCACGTCAAAAGCCACCTACAGAAATATCGACTTGCAAAATACCTTCCCGACTCCTCATCTGATGGGAAAAAGGCTGACAAGAAGGATTCTAATGATATTCTATCAAACATTGATGGCTCGTCAGGAATGCAAATTACTGAAGCACTTAAGCTGCAGATGGAGGTCCAGAAGCGACTGCATGAACAATTGGAGGTACAGAGACAGCTACAGTTACGGATTGAAGCCCAAGGCAAGTACCTAAAGAAGATAATTGAAGAGCAACAAAAACTTAGTGGAGTTCTTTCAGGAGCTCCAGTTGCATCTGCCTTTTCAGCTCCTGCTTCTGGTGATAACTGCCCAGAAACTGATAAAAATGACCCTCCAACACCTGCACCCACATCTGAGTTTCCTCGCCAAGAGAAACCATCAAAGGAACATGCCCAAGCCAAGAGTGTCTCTATTGATGATTCTTTCTCATCTCATCACGAACCGTTGACGCCAGATTCTGGTTGCCATAGCTCCCGGAGTGAGAGTCCAAGGCCAGTGAAGAAGCAAAGACAGTACAGGGATGGTGCATTTGCCAAATCAGAGATGATACTTGCACATCAGATACTGGAGTCAAGTTTAAACTCCACTCACAAGGAATCACGCTCTGTTTTTCCAGCCAGGGAAAAGTTCGATCCTTCATCTGGAATATCAATAGGGGACAACTACCAGTTAGACTAA 1020 44.31 MDRLLRSFIWVNDMFQQQSAHNSSFLQNNLLVRDKHIPSDACLMDPAKGNNGTSNNPNLASKQRLRWTHDLHERFVNAVAELGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKKADKKDSNDILSNIDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQKLSGVLSGAPVASAFSAPASGDNCPETDKNDPPTPAPTSEFPRQEKPSKEHAQAKSVSIDDSFSSHHEPLTPDSGCHSSRSESPRPVKKQRQYRDGAFAKSEMILAHQILESSLNSTHKESRSVFPAREKFDPSSGISIGDNYQLD 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33433756 33437237 - CcPI632755_04g018850.1 Cco04g1885 177110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1885 339 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 46 310 IPR046955 GO:0003700(InterPro)
Cco04g1885 339 NCBIfam myb-like DNA-binding domain, SHAQKYF class 62 117 IPR006447 GO:0003677(InterPro)
Cco04g1885 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 119 IPR017930 -
Cco04g1885 339 Coils Coil 151 171 - -
Cco04g1885 339 MobiDBLite consensus disorder prediction 250 274 - -
Cco04g1885 339 MobiDBLite consensus disorder prediction 122 144 - -
Cco04g1885 339 MobiDBLite consensus disorder prediction 209 292 - -
Cco04g1885 339 MobiDBLite consensus disorder prediction 305 339 - -
Cco04g1885 339 FunFam Myb family transcription factor 61 119 - -
Cco04g1885 339 Gene3D - 61 120 - -
Cco04g1885 339 Pfam MYB-CC type transfactor, LHEQLE motif 148 194 IPR025756 -
Cco04g1885 339 SUPERFAMILY Homeodomain-like 61 116 IPR009057 -
Cco04g1885 339 MobiDBLite consensus disorder prediction 122 138 - -
Cco04g1885 339 Pfam Myb-like DNA-binding domain 64 115 IPR001005 -
Cco04g1885 339 MobiDBLite consensus disorder prediction 275 289 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1885 Cco-Chr4:33433756 Cco10g1671 Cco-Chr10:30106313 1.70E-43 dispersed
Cco04g1885 Cco-Chr4:33433756 Cco04g1886 Cco-Chr4:33440664 1.50E-20 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59124 PF00249 Myb_DNA-binding 8.20E-08 CL0123 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1885 - - - 0.0