Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1886 ATGTTTCCCAGACTCGTTAATCCCGACGGAGATATCCAGATCCATGGCCCCCGTGGTTCTGTTGCTTCCGACCTAACCCACAGTCACCGAGGAGACCCTTGTCTCGTTTTGACTTCAGATCCCAAACCTCGCCTCCGCTGGACTGCCGATCTTCACGAGCGATTCGTCGATGCCGTCACTCAGCTCGGTGGTGCTGGCAAAGCTACTCCAAAAGCAATAATGCGAACAATGAATGTGAAAGGACTGACTCTCTTCCATCTGAAGAGCCACCTCCAGAAATACAGATTAGGTAAGCAATCAGGGAAGGATATGGGTGAGGCATCTAAAGATGGTGCATATCTTTTAGAAAGTCCAAGTACGAATAATTTCTCTCCTGACTTGCCAATTTCTGAAATGGCCGATGGTTATGAAGTCAAGGAGGCATTAAGAGCGCAAATGGAAGTTCAAAGTAAATTACATCTGCAAGTTGAGGCAGAGAAGCACCTACGAATTCGTCAGGATGCCGAGCGAAGATATTTGGCCATGCTTGAGAGAGCTTGTAAAATGCTTGCAGATCAATTCATTGGAGGCGCAGTTTCGGACTCAGACAGCAAGAAGTCCCAAGGACAGGATCGTAAGAGCCCAAGAGGTTCCTCCATCGACCCACTTGGTTTCTATGCTTCCCAATCACAAGAGATGGAAAGAGTCAATGGCACGGAAGAAGTGCAGGCTAATCTCCCTTGCCAAAGGGCTGATTGTTCAACCGAAAGCTGCCTAACCTCCAACGAGAGTCCTGGAGGATTGGCTATGGAAAAATCTCCTGTTGCAAGCAAGAAAAACATGGTTAACTTGGATTCAGCAACTGCATCTTTGATTTGGGGTGAAGCTAAGGAAAGAATACAAGATGCTAACATCATCCAAGTTAACCATCACGGTGTATCCGGATGCGACATGTGGGGATGA 942 47.35 MFPRLVNPDGDIQIHGPRGSVASDLTHSHRGDPCLVLTSDPKPRLRWTADLHERFVDAVTQLGGAGKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDMGEASKDGAYLLESPSTNNFSPDLPISEMADGYEVKEALRAQMEVQSKLHLQVEAEKHLRIRQDAERRYLAMLERACKMLADQFIGGAVSDSDSKKSQGQDRKSPRGSSIDPLGFYASQSQEMERVNGTEEVQANLPCQRADCSTESCLTSNESPGGLAMEKSPVASKKNMVNLDSATASLIWGEAKERIQDANIIQVNHHGVSGCDMWG 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33440664 33445480 - CcPI632755_04g018860.1 Cco04g1886 177111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1886 313 Pfam Myb-like DNA-binding domain 44 95 IPR001005 -
Cco04g1886 313 MobiDBLite consensus disorder prediction 1 26 - -
Cco04g1886 313 Gene3D - 41 99 - -
Cco04g1886 313 MobiDBLite consensus disorder prediction 191 216 - -
Cco04g1886 313 SUPERFAMILY Homeodomain-like 42 98 IPR009057 -
Cco04g1886 313 NCBIfam myb-like DNA-binding domain, SHAQKYF class 42 97 IPR006447 GO:0003677(InterPro)
Cco04g1886 313 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 26 291 IPR046955 GO:0003700(InterPro)
Cco04g1886 313 Pfam MYB-CC type transfactor, LHEQLE motif 137 182 IPR025756 -
Cco04g1886 313 FunFam Myb family transcription factor 41 99 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2008 Cco-Chr2:33035249 Cco04g1886 Cco-Chr4:33440664 6.50E-30 dispersed
Cco04g1886 Cco-Chr4:33440664 Cco05g0383 Cco-Chr5:3112556 3.30E-46 dispersed
Cco04g1885 Cco-Chr4:33433756 Cco04g1886 Cco-Chr4:33440664 1.50E-20 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59125 PF00249 Myb_DNA-binding 8.40E-06 CL0123 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1886 - - - 0.0