Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g1886 | ATGTTTCCCAGACTCGTTAATCCCGACGGAGATATCCAGATCCATGGCCCCCGTGGTTCTGTTGCTTCCGACCTAACCCACAGTCACCGAGGAGACCCTTGTCTCGTTTTGACTTCAGATCCCAAACCTCGCCTCCGCTGGACTGCCGATCTTCACGAGCGATTCGTCGATGCCGTCACTCAGCTCGGTGGTGCTGGCAAAGCTACTCCAAAAGCAATAATGCGAACAATGAATGTGAAAGGACTGACTCTCTTCCATCTGAAGAGCCACCTCCAGAAATACAGATTAGGTAAGCAATCAGGGAAGGATATGGGTGAGGCATCTAAAGATGGTGCATATCTTTTAGAAAGTCCAAGTACGAATAATTTCTCTCCTGACTTGCCAATTTCTGAAATGGCCGATGGTTATGAAGTCAAGGAGGCATTAAGAGCGCAAATGGAAGTTCAAAGTAAATTACATCTGCAAGTTGAGGCAGAGAAGCACCTACGAATTCGTCAGGATGCCGAGCGAAGATATTTGGCCATGCTTGAGAGAGCTTGTAAAATGCTTGCAGATCAATTCATTGGAGGCGCAGTTTCGGACTCAGACAGCAAGAAGTCCCAAGGACAGGATCGTAAGAGCCCAAGAGGTTCCTCCATCGACCCACTTGGTTTCTATGCTTCCCAATCACAAGAGATGGAAAGAGTCAATGGCACGGAAGAAGTGCAGGCTAATCTCCCTTGCCAAAGGGCTGATTGTTCAACCGAAAGCTGCCTAACCTCCAACGAGAGTCCTGGAGGATTGGCTATGGAAAAATCTCCTGTTGCAAGCAAGAAAAACATGGTTAACTTGGATTCAGCAACTGCATCTTTGATTTGGGGTGAAGCTAAGGAAAGAATACAAGATGCTAACATCATCCAAGTTAACCATCACGGTGTATCCGGATGCGACATGTGGGGATGA | 942 | 47.35 | MFPRLVNPDGDIQIHGPRGSVASDLTHSHRGDPCLVLTSDPKPRLRWTADLHERFVDAVTQLGGAGKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDMGEASKDGAYLLESPSTNNFSPDLPISEMADGYEVKEALRAQMEVQSKLHLQVEAEKHLRIRQDAERRYLAMLERACKMLADQFIGGAVSDSDSKKSQGQDRKSPRGSSIDPLGFYASQSQEMERVNGTEEVQANLPCQRADCSTESCLTSNESPGGLAMEKSPVASKKNMVNLDSATASLIWGEAKERIQDANIIQVNHHGVSGCDMWG | 313 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 33440664 | 33445480 | - | CcPI632755_04g018860.1 | Cco04g1886 | 177111 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g1886 | 313 | Pfam | Myb-like DNA-binding domain | 44 | 95 | IPR001005 | - | |
Cco04g1886 | 313 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Cco04g1886 | 313 | Gene3D | - | 41 | 99 | - | - | |
Cco04g1886 | 313 | MobiDBLite | consensus disorder prediction | 191 | 216 | - | - | |
Cco04g1886 | 313 | SUPERFAMILY | Homeodomain-like | 42 | 98 | IPR009057 | - | |
Cco04g1886 | 313 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 42 | 97 | IPR006447 | GO:0003677(InterPro) | |
Cco04g1886 | 313 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 26 | 291 | IPR046955 | GO:0003700(InterPro) | |
Cco04g1886 | 313 | Pfam | MYB-CC type transfactor, LHEQLE motif | 137 | 182 | IPR025756 | - | |
Cco04g1886 | 313 | FunFam | Myb family transcription factor | 41 | 99 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g2008 | Cco-Chr2:33035249 | Cco04g1886 | Cco-Chr4:33440664 | 6.50E-30 | dispersed | |
Cco04g1886 | Cco-Chr4:33440664 | Cco05g0383 | Cco-Chr5:3112556 | 3.30E-46 | dispersed | |
Cco04g1885 | Cco-Chr4:33433756 | Cco04g1886 | Cco-Chr4:33440664 | 1.50E-20 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59125 | PF00249 | Myb_DNA-binding | 8.40E-06 | CL0123 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g1886 | - | - | - | 0.0 |