Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g1902 | ATGGCCTCAATTGCTGGTTCCAAAGCTTCCTCAAATCAGCCACAAAAACCAGCTAATGGTGTAATGGCTAATGGAAAGGATACGGGGCTCTTGCCTCCGCAGATTTCGAAGTCAAGCAAACCTGCATCAGTTACTTCTGACCAGTCTAAATCAGTAAAGAGTATCTCAAAGAAGGATATGGAAATATGTCCCGACAAAAAGTCACCAGTATCGAATCAAAATGGATCTGCTAAGTTGTTGACTGAAAATTTTAATTTCAGCATATCCTCACCTGGTCTGAAACAAACATCAACTGAAGTAGATTCCCCTCACAATGAAGATAAATGTTCACCTGGAAGCTCCCTAGACCAAGAGAAGAAAACATCAGAATATGGAAGTGTAAAGAGCAGTTCTTTTTCCGGCAAAGTAAGTGATGGGACTAGTTGTCTTGCCAAGACCAGTGGAAGTACAAAGGTTAGCGACCATGGTAACTTTGTTGAGAGTGGAAAGAGCAGTATATGTCGAGGGAGCACGAGCAGTGACGTAAGCGATGAGAGCTCTTGCAGTAGTTTTAGTAGTAGTATCAGTAAACCTCACAAAGCAAATGATTTGAGATGGGAGGCCATTCAAGTTGTCCGTGCAAAAGATGGGGCGATGGGATTAGGTCATTTTAGACTTCTGAAGAAGTTGGGTTGTGGGGATATTGGGAGTGTCTATCTCTCTGAGTTAAGGGGAACCAAATGCCATTTTGCAATGAAGGTTATGGATAAAAATACTCTAGCAAGTCGTAAAAAGTTGCTTCGTGCACAGACAGAAAGAGAAATACTTCAATCTCTTGATCACCCCTTCCTTCCAACGTTATACACCCACTTTGAGACGGAAAAATTCTCATGCTTGGTGATGGAGTTCTGCCCTGGAGGAGACTTGCACACTCTAAGGCAGAGGCAACCAGGGAAGCATTTTCCCGAGCAGGCAGTGAAATTCTATGTAGCAGAGGTTCTTCTTGCTCTGGAATACCTGCACATGCTTGGGATTGTGTACCGTGATCTTAAGCCAGAAAATGTTCTTGTGAGGGAAGATGGACACATAATGCTTTCAGATTTTGACCTATCTCTCCGTTGTGCTGTTAATCCGACTCTCGTCAAAAATCTCTCTGCAGAGTCGGAGGCTTTAAGAAAGAACACAGGTTACTGCGTGCAGCCTGCTTGCATTGAGCCTTCCTGCATCCAACCATCTTGTGTAGTTCCTACAACCTGCTTCTCACCTCGTCTCTTTTCTAGTAAGTCAAAGAAGGAACGAAAACCCAAAATTGATATGGGAAATCAGGTCAGCCCATTGCCAGAGCTCATAGCAGAACCAACCGATGCCCGATCCATGTCTTTCGTAGGAACCCATGAGTACTTGGCACCTGAGATAATCAAGGGTGAAGGCCATGGAAGTGCTGTGGATTGGTGGACTTTTGGAATTTTTCTATACGAGCTACTATTTGGTAAAACTCCTTTCAAGGGGTCGGGAAATCGAGCTACATTATTCAACATTGTCGGTCAGCCACTTCGGTTTCCAGATGCACCAGCTGTGAGTTTTGCTGCAAAGGATCTGATAAGAGGATTGCTAGTGAAGGAACCACAACAAAGATTGGCTTATAAACGTGGAGCAACTGAGATTAAGCAGCATCCTTTCTTTGAAGGTGTAAATTGGGCATTAATACGTTGTGCCACTCCTCCCGAAATCCCAAGGCCGGTCGAGATTGAGAGAATACCACATGCAGTGGCATCAACCAGTGAAAAGGCCGCAGCTATAGCAGCAGTTGCTGCAGATAAAAAAGCTTCCGATAATTATTTCGAATTTGATTTCTTTTAG | 1839 | 43.88 | MASIAGSKASSNQPQKPANGVMANGKDTGLLPPQISKSSKPASVTSDQSKSVKSISKKDMEICPDKKSPVSNQNGSAKLLTENFNFSISSPGLKQTSTEVDSPHNEDKCSPGSSLDQEKKTSEYGSVKSSSFSGKVSDGTSCLAKTSGSTKVSDHGNFVESGKSSICRGSTSSDVSDESSCSSFSSSISKPHKANDLRWEAIQVVRAKDGAMGLGHFRLLKKLGCGDIGSVYLSELRGTKCHFAMKVMDKNTLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQRQPGKHFPEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCAVNPTLVKNLSAESEALRKNTGYCVQPACIEPSCIQPSCVVPTTCFSPRLFSSKSKKERKPKIDMGNQVSPLPELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNIVGQPLRFPDAPAVSFAAKDLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPRPVEIERIPHAVASTSEKAAAIAAVAADKKASDNYFEFDFF | 612 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 33532347 | 33535708 | + | CcPI632755_04g019020.1 | Cco04g1902 | 177127 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g1902 | 612 | Gene3D | Transferase(Phosphotransferase) domain 1 | 448 | 572 | - | - | |
Cco04g1902 | 612 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Cco04g1902 | 612 | FunFam | Serine/threonine-protein kinase AGC1-7 | 447 | 572 | - | - | |
Cco04g1902 | 612 | PANTHER | FLIPPASE KINASE 1-RELATED | 81 | 586 | - | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) | |
Cco04g1902 | 612 | FunFam | Serine/threonine-protein kinase D6PK-like | 215 | 300 | - | - | |
Cco04g1902 | 612 | SUPERFAMILY | Protein kinase-like (PK-like) | 192 | 580 | IPR011009 | - | |
Cco04g1902 | 612 | ProSiteProfiles | Protein kinase domain profile. | 217 | 554 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco04g1902 | 612 | MobiDBLite | consensus disorder prediction | 115 | 140 | - | - | |
Cco04g1902 | 612 | MobiDBLite | consensus disorder prediction | 1 | 76 | - | - | |
Cco04g1902 | 612 | Gene3D | Phosphorylase Kinase; domain 1 | 215 | 300 | - | - | |
Cco04g1902 | 612 | MobiDBLite | consensus disorder prediction | 88 | 140 | - | - | |
Cco04g1902 | 612 | Pfam | Protein kinase domain | 218 | 367 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco04g1902 | 612 | Pfam | Protein kinase domain | 451 | 554 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco04g1902 | 612 | CDD | STKc_phototropin_like | 216 | 577 | - | - | |
Cco04g1902 | 612 | FunFam | serine/threonine-protein kinase D6PK-like | 301 | 368 | - | - | |
Cco04g1902 | 612 | MobiDBLite | consensus disorder prediction | 162 | 181 | - | - | |
Cco04g1902 | 612 | MobiDBLite | consensus disorder prediction | 100 | 114 | - | - | |
Cco04g1902 | 612 | Gene3D | Transferase(Phosphotransferase) domain 1 | 301 | 368 | - | - | |
Cco04g1902 | 612 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 338 | 350 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco04g1902 | 612 | MobiDBLite | consensus disorder prediction | 31 | 51 | - | - | |
Cco04g1902 | 612 | SMART | serkin_6 | 217 | 554 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g2356 | Cco-Chr2:35975743 | Cco04g1902 | Cco-Chr4:33532347 | 1.40E-114 | dispersed | |
Cco04g1196 | Cco-Chr4:27412527 | Cco04g1902 | Cco-Chr4:33532347 | 3.00E-149 | dispersed | |
Cco04g1902 | Cco-Chr4:33532347 | Cco10g1370 | Cco-Chr10:26715631 | 6.00E-185 | dispersed | |
Cco04g0191 | Cco-Chr4:4495443 | Cco04g1902 | Cco-Chr4:33532347 | 5.50E-151 | transposed | |
Cco11g0307 | Cco-Chr11:3089334 | Cco04g1902 | Cco-Chr4:33532347 | 2.70E-114 | transposed | |
Cco01g1229 | Cco-Chr1:18768052 | Cco04g1902 | Cco-Chr4:33532347 | 1.60E-225 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86776 | PF00069 | Pkinase | 6.50E-38 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g1902 | K08286 | - | csv:101209748 | 1108.98 |