Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1902 ATGGCCTCAATTGCTGGTTCCAAAGCTTCCTCAAATCAGCCACAAAAACCAGCTAATGGTGTAATGGCTAATGGAAAGGATACGGGGCTCTTGCCTCCGCAGATTTCGAAGTCAAGCAAACCTGCATCAGTTACTTCTGACCAGTCTAAATCAGTAAAGAGTATCTCAAAGAAGGATATGGAAATATGTCCCGACAAAAAGTCACCAGTATCGAATCAAAATGGATCTGCTAAGTTGTTGACTGAAAATTTTAATTTCAGCATATCCTCACCTGGTCTGAAACAAACATCAACTGAAGTAGATTCCCCTCACAATGAAGATAAATGTTCACCTGGAAGCTCCCTAGACCAAGAGAAGAAAACATCAGAATATGGAAGTGTAAAGAGCAGTTCTTTTTCCGGCAAAGTAAGTGATGGGACTAGTTGTCTTGCCAAGACCAGTGGAAGTACAAAGGTTAGCGACCATGGTAACTTTGTTGAGAGTGGAAAGAGCAGTATATGTCGAGGGAGCACGAGCAGTGACGTAAGCGATGAGAGCTCTTGCAGTAGTTTTAGTAGTAGTATCAGTAAACCTCACAAAGCAAATGATTTGAGATGGGAGGCCATTCAAGTTGTCCGTGCAAAAGATGGGGCGATGGGATTAGGTCATTTTAGACTTCTGAAGAAGTTGGGTTGTGGGGATATTGGGAGTGTCTATCTCTCTGAGTTAAGGGGAACCAAATGCCATTTTGCAATGAAGGTTATGGATAAAAATACTCTAGCAAGTCGTAAAAAGTTGCTTCGTGCACAGACAGAAAGAGAAATACTTCAATCTCTTGATCACCCCTTCCTTCCAACGTTATACACCCACTTTGAGACGGAAAAATTCTCATGCTTGGTGATGGAGTTCTGCCCTGGAGGAGACTTGCACACTCTAAGGCAGAGGCAACCAGGGAAGCATTTTCCCGAGCAGGCAGTGAAATTCTATGTAGCAGAGGTTCTTCTTGCTCTGGAATACCTGCACATGCTTGGGATTGTGTACCGTGATCTTAAGCCAGAAAATGTTCTTGTGAGGGAAGATGGACACATAATGCTTTCAGATTTTGACCTATCTCTCCGTTGTGCTGTTAATCCGACTCTCGTCAAAAATCTCTCTGCAGAGTCGGAGGCTTTAAGAAAGAACACAGGTTACTGCGTGCAGCCTGCTTGCATTGAGCCTTCCTGCATCCAACCATCTTGTGTAGTTCCTACAACCTGCTTCTCACCTCGTCTCTTTTCTAGTAAGTCAAAGAAGGAACGAAAACCCAAAATTGATATGGGAAATCAGGTCAGCCCATTGCCAGAGCTCATAGCAGAACCAACCGATGCCCGATCCATGTCTTTCGTAGGAACCCATGAGTACTTGGCACCTGAGATAATCAAGGGTGAAGGCCATGGAAGTGCTGTGGATTGGTGGACTTTTGGAATTTTTCTATACGAGCTACTATTTGGTAAAACTCCTTTCAAGGGGTCGGGAAATCGAGCTACATTATTCAACATTGTCGGTCAGCCACTTCGGTTTCCAGATGCACCAGCTGTGAGTTTTGCTGCAAAGGATCTGATAAGAGGATTGCTAGTGAAGGAACCACAACAAAGATTGGCTTATAAACGTGGAGCAACTGAGATTAAGCAGCATCCTTTCTTTGAAGGTGTAAATTGGGCATTAATACGTTGTGCCACTCCTCCCGAAATCCCAAGGCCGGTCGAGATTGAGAGAATACCACATGCAGTGGCATCAACCAGTGAAAAGGCCGCAGCTATAGCAGCAGTTGCTGCAGATAAAAAAGCTTCCGATAATTATTTCGAATTTGATTTCTTTTAG 1839 43.88 MASIAGSKASSNQPQKPANGVMANGKDTGLLPPQISKSSKPASVTSDQSKSVKSISKKDMEICPDKKSPVSNQNGSAKLLTENFNFSISSPGLKQTSTEVDSPHNEDKCSPGSSLDQEKKTSEYGSVKSSSFSGKVSDGTSCLAKTSGSTKVSDHGNFVESGKSSICRGSTSSDVSDESSCSSFSSSISKPHKANDLRWEAIQVVRAKDGAMGLGHFRLLKKLGCGDIGSVYLSELRGTKCHFAMKVMDKNTLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQRQPGKHFPEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCAVNPTLVKNLSAESEALRKNTGYCVQPACIEPSCIQPSCVVPTTCFSPRLFSSKSKKERKPKIDMGNQVSPLPELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNIVGQPLRFPDAPAVSFAAKDLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPRPVEIERIPHAVASTSEKAAAIAAVAADKKASDNYFEFDFF 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33532347 33535708 + CcPI632755_04g019020.1 Cco04g1902 177127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1902 612 Gene3D Transferase(Phosphotransferase) domain 1 448 572 - -
Cco04g1902 612 MobiDBLite consensus disorder prediction 1 19 - -
Cco04g1902 612 FunFam Serine/threonine-protein kinase AGC1-7 447 572 - -
Cco04g1902 612 PANTHER FLIPPASE KINASE 1-RELATED 81 586 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cco04g1902 612 FunFam Serine/threonine-protein kinase D6PK-like 215 300 - -
Cco04g1902 612 SUPERFAMILY Protein kinase-like (PK-like) 192 580 IPR011009 -
Cco04g1902 612 ProSiteProfiles Protein kinase domain profile. 217 554 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g1902 612 MobiDBLite consensus disorder prediction 115 140 - -
Cco04g1902 612 MobiDBLite consensus disorder prediction 1 76 - -
Cco04g1902 612 Gene3D Phosphorylase Kinase; domain 1 215 300 - -
Cco04g1902 612 MobiDBLite consensus disorder prediction 88 140 - -
Cco04g1902 612 Pfam Protein kinase domain 218 367 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g1902 612 Pfam Protein kinase domain 451 554 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g1902 612 CDD STKc_phototropin_like 216 577 - -
Cco04g1902 612 FunFam serine/threonine-protein kinase D6PK-like 301 368 - -
Cco04g1902 612 MobiDBLite consensus disorder prediction 162 181 - -
Cco04g1902 612 MobiDBLite consensus disorder prediction 100 114 - -
Cco04g1902 612 Gene3D Transferase(Phosphotransferase) domain 1 301 368 - -
Cco04g1902 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 338 350 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g1902 612 MobiDBLite consensus disorder prediction 31 51 - -
Cco04g1902 612 SMART serkin_6 217 554 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2356 Cco-Chr2:35975743 Cco04g1902 Cco-Chr4:33532347 1.40E-114 dispersed
Cco04g1196 Cco-Chr4:27412527 Cco04g1902 Cco-Chr4:33532347 3.00E-149 dispersed
Cco04g1902 Cco-Chr4:33532347 Cco10g1370 Cco-Chr10:26715631 6.00E-185 dispersed
Cco04g0191 Cco-Chr4:4495443 Cco04g1902 Cco-Chr4:33532347 5.50E-151 transposed
Cco11g0307 Cco-Chr11:3089334 Cco04g1902 Cco-Chr4:33532347 2.70E-114 transposed
Cco01g1229 Cco-Chr1:18768052 Cco04g1902 Cco-Chr4:33532347 1.60E-225 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86776 PF00069 Pkinase 6.50E-38 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1902 K08286 - csv:101209748 1108.98