Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1941 ATGGCGACCTCATGTTTCGGTTCACTTAGGATTCGTAAATCGAAGAGCAAACCCTTATCAACCCCTTCCTCGTTGAAATCCCAGATGAATTCTGAAATGGAAAATATGGAAAGGAGAAGATTTGATAGTTTGGAATCGTGGTCAATGATCCTAGAGTCTGAAAATGTGGAAACCTGGGAGACAGCAAAGGAGGATCAGGAGGAGTGGACAGCTGATCTATCTCAACTCTTCATTGGTAACAAATTTGCCTCTGGTGCTCACAGTCGGATTTACCGTGGAATTTACAAGCAGAGAGCCGTTGCTGTGAAGATGGTGAGAATTCCAAACCAAAAAGAGGAAACAAGAGCCAAACTCGAGCAACAGTTCAAGTCTGAAGTTGCCTTGCTTTCTCGTCTCTTTCATCCCAACATAGTTCAGTTCATTGCAGCCTGTAAGAAGCCACCTGTATACTGCATAATTACAGAGTATATGTCACAAGGAACTCTGAGGATGTATCTTAACAAGAAAGAGCCATATTCACTCTCAACAGAAACAATATTGAGGTTAGCTCTTGACATATCAAGAGGAATGGAATACCTCCATTCCCAAGGAGTAATCCACAGAGACCTCAAATCAAACAACTTGCTTCTAAATGATGAAATGAGAGTAAAAGTAGCCGATTTCGGAACATCCTGCCTCGAAACACAGTGCCGAGAATCAAAAGGGAACATGGGAACTTACCGATGGATGGCGCCGGAGATGATCAAGGAGAAGCCTTATACTCGCAAAGTTGATGTGTACAGCTTTGGGATTGTGCTGTGGGAGCTTACCACGGCTCTGCTTCCGTTTCAAGGGATGACCCCCGTGCAAGCTGCCTTTGCCGTCGCCGAGAAGAATGAGAGGCCACCATTACCGGCGAGTTGTCAGCCGGCACTAGCCCACCTGATAAAGCGGTGTTGGGCAGCGAATCCGTCGAAGCGGCCGGATTTCAGCGACATTGTGGTGGCTTTGGAGAAATACGATGAGTGTGTGAAAGAGGGTCTTCCCCTTGCACACCATAGAAGATTGGTAAACCGAAACGCCATTATCGAACGCTTGAAAGCTTGCGCTTCAACCAGTTCTTCAATCCCTGTACATGCCTAA 1122 46.08 MATSCFGSLRIRKSKSKPLSTPSSLKSQMNSEMENMERRRFDSLESWSMILESENVETWETAKEDQEEWTADLSQLFIGNKFASGAHSRIYRGIYKQRAVAVKMVRIPNQKEETRAKLEQQFKSEVALLSRLFHPNIVQFIAACKKPPVYCIITEYMSQGTLRMYLNKKEPYSLSTETILRLALDISRGMEYLHSQGVIHRDLKSNNLLLNDEMRVKVADFGTSCLETQCRESKGNMGTYRWMAPEMIKEKPYTRKVDVYSFGIVLWELTTALLPFQGMTPVQAAFAVAEKNERPPLPASCQPALAHLIKRCWAANPSKRPDFSDIVVALEKYDECVKEGLPLAHHRRLVNRNAIIERLKACASTSSSIPVHA 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33738205 33739614 - CcPI632755_04g019410.1 Cco04g1941 177166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1941 373 PANTHER SERINE-THREONINE PROTEIN KINASE 55 331 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cco04g1941 373 CDD STKc_MAP3K-like 83 327 - -
Cco04g1941 373 PRINTS Tyrosine kinase catalytic domain signature 238 248 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g1941 373 PRINTS Tyrosine kinase catalytic domain signature 154 167 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g1941 373 PRINTS Tyrosine kinase catalytic domain signature 301 323 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g1941 373 PRINTS Tyrosine kinase catalytic domain signature 192 210 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g1941 373 PRINTS Tyrosine kinase catalytic domain signature 257 279 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g1941 373 ProSiteProfiles Protein kinase domain profile. 76 349 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g1941 373 SMART serkin_6 76 337 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g1941 373 SUPERFAMILY Protein kinase-like (PK-like) 52 327 IPR011009 -
Cco04g1941 373 FunFam Serine/threonine-protein kinase isoform 1 66 158 - -
Cco04g1941 373 MobiDBLite consensus disorder prediction 14 31 - -
Cco04g1941 373 Pfam Protein tyrosine and serine/threonine kinase 79 329 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g1941 373 FunFam serine/threonine-protein kinase HT1 159 352 - -
Cco04g1941 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g1941 373 Gene3D Transferase(Phosphotransferase) domain 1 159 354 - -
Cco04g1941 373 Gene3D Phosphorylase Kinase; domain 1 65 158 - -
Cco04g1941 373 MobiDBLite consensus disorder prediction 13 32 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1456 Cco-Chr1:26321588 Cco04g1941 Cco-Chr4:33738205 4.80E-107 dispersed
Cco03g0625 Cco-Chr3:6398301 Cco04g1941 Cco-Chr4:33738205 5.90E-87 dispersed
Cco04g1941 Cco-Chr4:33738205 Cco04g2089 Cco-Chr4:34819877 1.70E-89 dispersed
Cco02g0421 Cco-Chr2:3792907 Cco04g1941 Cco-Chr4:33738205 1.80E-66 transposed
Cco05g1761 Cco-Chr5:26025966 Cco04g1941 Cco-Chr4:33738205 2.50E-66 transposed
Cco08g0823 Cco-Chr8:20075576 Cco04g1941 Cco-Chr4:33738205 3.60E-62 transposed
Cco10g0042 Cco-Chr10:473834 Cco04g1941 Cco-Chr4:33738205 2.30E-69 transposed
Cco11g1147 Cco-Chr11:22402226 Cco04g1941 Cco-Chr4:33738205 1.10E-78 transposed
Cco03g0422 Cco-Chr3:4527491 Cco04g1941 Cco-Chr4:33738205 9.20E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86777 PF07714 PK_Tyr_Ser-Thr 5.30E-68 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1941 - - - 0.0