Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1953 ATGTCCAGTTTGATGATGATGCCTACGGTTTATGACTTCTTCTTATGTGAATGGCTGAGCGATGAGATTGGATTGTTCATGCGAAATGGGGTTCCAGTTCAGCACTCTCACTGCCTTCCATTCCCATCGCCACTGCTAAGTTTTAGCTTACTGCCTTGGTTTTCCATCTGTGTTGCCGTGCGCTGCCTCCCTCGATTCCATCGTTCTCCCCCCCCCCCTCTCTCTCACTCTTTTGCCAGTAATGGCAGTGCTTCATCAGTGCCACTGCTACAAAAGAGCGAGAAGAGAGTTTTCATCGGGAAGGGTCCAAGTGGGAGTTCTTTGGGAGGTATGATGAATTTTGGAAATCAAAATAATAATAATAGTAGTAGTAGTAATGGGTTATGTTCTATGATGATGATGATGCCATTAATCTCCTCCTCTTCTCAACAAGGAGGAAATGGGTCATGTACTCCATTTCTTCCTCTTCCTCCTAATTACAACAACAACAATAATAATACTTCCAATTCTATTTGTAATTACTTCATGGATGAAAACAACAACAACAACGAGGGTAGTAATGGAGGAGGGAATTATTGTTGTGAAGTAAAGGCTAAAATCATGGCTCATCCCCACTACCACCGTCTCCTCGCTGCTTATGTCAATTGTCGTAAGGTGGGGGCGCCGCCGGAAGTGGTGGCTCGGCTTGAAGAAGTGTGTGCAAGTGCAGCAATAATGAGTGGTAATAGTAGTGGGTGTATTGGGGAAGATCCAGCCCTTGATCAGTTCATGGAAGCTTATTGTGAAATGCTCACTAAATATGAACAAGAACTTTCTAAACCCTTTAGAGATGCCATGCTTTTTCTTCAACGAATTGACTCCCAATTCAAAGCCCTCTCTATCTCTTCCTCTCATGCCGCTGCTTGTGGCGAGACATTTGATAGGAACGGATCGTCTGAAGAGGAAGTTGATATCAATGGGAACTCGATCGATCCTCAGGCGGAAGATCGTGAACTGAAAGGTCAGCTGCTGCGCAAATACAGCGGATACTTAGGCAGTCTGAAGCAAGAATTCATGAAGAAAAGGAAGAAAGGGAAGCTACCTAAGGAAGCCAGACAACAACTCCTGGATTGGTGGAGCAGACATTACAAATGGCCTTACCCTTCTGAATCACAGAAGCTAGCTTTAGCTCAATCAACTGGGTTAGATCAAAAGCAAATCAACAATTGGTTCATCAATCAAAGAAAGAGACACTGGAAACCATCAGAAGATATGCAATTTGTGGTGATGGATGCTGCTCATCCACAGTATTACATGGACACTGTCTTGGGGAATCCTTTTCCCTTGGATATCTCTCCTACTCTACTCTAA 1350 44.0 MSSLMMMPTVYDFFLCEWLSDEIGLFMRNGVPVQHSHCLPFPSPLLSFSLLPWFSICVAVRCLPRFHRSPPPPLSHSFASNGSASSVPLLQKSEKRVFIGKGPSGSSLGGMMNFGNQNNNNSSSSNGLCSMMMMMPLISSSSQQGGNGSCTPFLPLPPNYNNNNNNTSNSICNYFMDENNNNNEGSNGGGNYCCEVKAKIMAHPHYHRLLAAYVNCRKVGAPPEVVARLEEVCASAAIMSGNSSGCIGEDPALDQFMEAYCEMLTKYEQELSKPFRDAMLFLQRIDSQFKALSISSSHAAACGETFDRNGSSEEEVDINGNSIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAQSTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDAAHPQYYMDTVLGNPFPLDISPTLL 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33844720 33850241 + CcPI632755_04g019530.1 Cco04g1953 177178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1953 449 SMART ELK_2 331 352 IPR005539 GO:0003677(InterPro)
Cco04g1953 449 ProSiteProfiles ELK domain profile. 331 351 IPR005539 GO:0003677(InterPro)
Cco04g1953 449 SMART KNOX2_2 243 294 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cco04g1953 449 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 213 421 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cco04g1953 449 SMART KNOX1_2 194 238 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cco04g1953 449 SUPERFAMILY Homeodomain-like 353 427 IPR009057 -
Cco04g1953 449 ProSiteProfiles 'Homeobox' domain profile. 351 414 IPR001356 GO:0003677(InterPro)
Cco04g1953 449 Pfam KNOX2 domain 246 292 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cco04g1953 449 SMART HOX_1 353 418 IPR001356 GO:0003677(InterPro)
Cco04g1953 449 Pfam Homeobox KN domain 371 410 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco04g1953 449 Pfam KNOX1 domain 196 234 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cco04g1953 449 Pfam ELK domain 331 352 IPR005539 GO:0003677(InterPro)
Cco04g1953 449 Gene3D - 356 418 - -
Cco04g1953 449 FunFam Homeobox protein knotted-1-like 2 356 418 - -
Cco04g1953 449 ProSitePatterns 'Homeobox' domain signature. 389 412 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cco04g1953 449 CDD homeodomain 363 415 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1953 Cco-Chr4:33844720 Cco05g2007 Cco-Chr5:29168120 2.30E-77 dispersed
Cco02g0232 Cco-Chr2:2172233 Cco04g1953 Cco-Chr4:33844720 3.20E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59129 PF03791 KNOX2 7.70E-20 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1953 - - - 0.0