Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g1953 | ATGTCCAGTTTGATGATGATGCCTACGGTTTATGACTTCTTCTTATGTGAATGGCTGAGCGATGAGATTGGATTGTTCATGCGAAATGGGGTTCCAGTTCAGCACTCTCACTGCCTTCCATTCCCATCGCCACTGCTAAGTTTTAGCTTACTGCCTTGGTTTTCCATCTGTGTTGCCGTGCGCTGCCTCCCTCGATTCCATCGTTCTCCCCCCCCCCCTCTCTCTCACTCTTTTGCCAGTAATGGCAGTGCTTCATCAGTGCCACTGCTACAAAAGAGCGAGAAGAGAGTTTTCATCGGGAAGGGTCCAAGTGGGAGTTCTTTGGGAGGTATGATGAATTTTGGAAATCAAAATAATAATAATAGTAGTAGTAGTAATGGGTTATGTTCTATGATGATGATGATGCCATTAATCTCCTCCTCTTCTCAACAAGGAGGAAATGGGTCATGTACTCCATTTCTTCCTCTTCCTCCTAATTACAACAACAACAATAATAATACTTCCAATTCTATTTGTAATTACTTCATGGATGAAAACAACAACAACAACGAGGGTAGTAATGGAGGAGGGAATTATTGTTGTGAAGTAAAGGCTAAAATCATGGCTCATCCCCACTACCACCGTCTCCTCGCTGCTTATGTCAATTGTCGTAAGGTGGGGGCGCCGCCGGAAGTGGTGGCTCGGCTTGAAGAAGTGTGTGCAAGTGCAGCAATAATGAGTGGTAATAGTAGTGGGTGTATTGGGGAAGATCCAGCCCTTGATCAGTTCATGGAAGCTTATTGTGAAATGCTCACTAAATATGAACAAGAACTTTCTAAACCCTTTAGAGATGCCATGCTTTTTCTTCAACGAATTGACTCCCAATTCAAAGCCCTCTCTATCTCTTCCTCTCATGCCGCTGCTTGTGGCGAGACATTTGATAGGAACGGATCGTCTGAAGAGGAAGTTGATATCAATGGGAACTCGATCGATCCTCAGGCGGAAGATCGTGAACTGAAAGGTCAGCTGCTGCGCAAATACAGCGGATACTTAGGCAGTCTGAAGCAAGAATTCATGAAGAAAAGGAAGAAAGGGAAGCTACCTAAGGAAGCCAGACAACAACTCCTGGATTGGTGGAGCAGACATTACAAATGGCCTTACCCTTCTGAATCACAGAAGCTAGCTTTAGCTCAATCAACTGGGTTAGATCAAAAGCAAATCAACAATTGGTTCATCAATCAAAGAAAGAGACACTGGAAACCATCAGAAGATATGCAATTTGTGGTGATGGATGCTGCTCATCCACAGTATTACATGGACACTGTCTTGGGGAATCCTTTTCCCTTGGATATCTCTCCTACTCTACTCTAA | 1350 | 44.0 | MSSLMMMPTVYDFFLCEWLSDEIGLFMRNGVPVQHSHCLPFPSPLLSFSLLPWFSICVAVRCLPRFHRSPPPPLSHSFASNGSASSVPLLQKSEKRVFIGKGPSGSSLGGMMNFGNQNNNNSSSSNGLCSMMMMMPLISSSSQQGGNGSCTPFLPLPPNYNNNNNNTSNSICNYFMDENNNNNEGSNGGGNYCCEVKAKIMAHPHYHRLLAAYVNCRKVGAPPEVVARLEEVCASAAIMSGNSSGCIGEDPALDQFMEAYCEMLTKYEQELSKPFRDAMLFLQRIDSQFKALSISSSHAAACGETFDRNGSSEEEVDINGNSIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAQSTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDAAHPQYYMDTVLGNPFPLDISPTLL | 449 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 33844720 | 33850241 | + | CcPI632755_04g019530.1 | Cco04g1953 | 177178 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g1953 | 449 | SMART | ELK_2 | 331 | 352 | IPR005539 | GO:0003677(InterPro) | |
Cco04g1953 | 449 | ProSiteProfiles | ELK domain profile. | 331 | 351 | IPR005539 | GO:0003677(InterPro) | |
Cco04g1953 | 449 | SMART | KNOX2_2 | 243 | 294 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cco04g1953 | 449 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 213 | 421 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cco04g1953 | 449 | SMART | KNOX1_2 | 194 | 238 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cco04g1953 | 449 | SUPERFAMILY | Homeodomain-like | 353 | 427 | IPR009057 | - | |
Cco04g1953 | 449 | ProSiteProfiles | 'Homeobox' domain profile. | 351 | 414 | IPR001356 | GO:0003677(InterPro) | |
Cco04g1953 | 449 | Pfam | KNOX2 domain | 246 | 292 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cco04g1953 | 449 | SMART | HOX_1 | 353 | 418 | IPR001356 | GO:0003677(InterPro) | |
Cco04g1953 | 449 | Pfam | Homeobox KN domain | 371 | 410 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Cco04g1953 | 449 | Pfam | KNOX1 domain | 196 | 234 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cco04g1953 | 449 | Pfam | ELK domain | 331 | 352 | IPR005539 | GO:0003677(InterPro) | |
Cco04g1953 | 449 | Gene3D | - | 356 | 418 | - | - | |
Cco04g1953 | 449 | FunFam | Homeobox protein knotted-1-like 2 | 356 | 418 | - | - | |
Cco04g1953 | 449 | ProSitePatterns | 'Homeobox' domain signature. | 389 | 412 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Cco04g1953 | 449 | CDD | homeodomain | 363 | 415 | IPR001356 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g1953 | Cco-Chr4:33844720 | Cco05g2007 | Cco-Chr5:29168120 | 2.30E-77 | dispersed | |
Cco02g0232 | Cco-Chr2:2172233 | Cco04g1953 | Cco-Chr4:33844720 | 3.20E-103 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59129 | PF03791 | KNOX2 | 7.70E-20 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g1953 | - | - | - | 0.0 |