Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g1960 | ATGGCTTTCCCATTATTATTCCTCTTTTTCCTACCTACAATTATCTCCACTCCCAACCCCAGCAACTATTATAGCGAACCAGCCCTCAACCCCATCGACGCATGCTGGCGGAGCAATCCCAATTGGGCAGCCAACCGCCAAGCCTTGGCGGACTGCGGCGTCGGGTTCGGCAGCGACGCCACGGGAGGCAAATTCGGGTCAATCTACGTGGTCACAGACCCATCGGACGACCCGGAATATCCGGAACCCGGAACGCTGCGTTTTGGGGTGATTCAAACGGAGCCGTTATGGATTGTATTCGCAACAGATATGGCGATTACCCTTAAAAGAGAACTGATGGTGAACAGCTTTAAGACCATAGACGGGCGAGGGGCAAAAGTGGAAATTAGTAATGGGCCATGTATTACTATCCAAAACGTGAGCCACGTCATAATCCACGGCATTAGCATCCATGATTGTAAGCCGGGGAAGTCTGGGCGCGTGAGAAGCACCGTCACTCACTGTGGGGACCGCCGCGAGTCGGACGGTGACGCCATTTCTATATTCAGTTCTTCCCATATTTGGATCGACCATTGCTATTTAGCTCGATGCACTGATGGACTCATTGACGTCATCCATGCCTCCACTGCCGTCACCATCTCCAACAATTACCTCACTCAACATGATAAAGTGATCCTTCTTGGTCACAACGATGACTTTACAGATGATAAAATCATGAAAGTGACCGTAGCTTTCAATCGTTTTGGCGATGGGCTTGTTCAAAGAATGCCCAGGGTACGATTTGGGTATGCTCATGTTGCTAATAATTGGTACAACAAGTGGGAAATGTACGCTATGGGTGGCAGTGCAGATCCAACCATCTTCAGCCAAGGAAACTACTTCATGGCTCCCGATGACTCATTGTCAAAACAAGTTACAAAGAGAGAGGTTTATGCGAATGGATGGAAGAAATGGAAATGGAGATCTTCAAATGATGTGTTTTTGAATGGGGCTTATTTTGTCCAATCTGGGTGGGGATCTTGTACGCCTTTCTACACTCAAGCTCAAGCATTTGCTGTTGCTCATGGCTCTTTGGCTCCTCTTTTGACTGAAACTGCTGGCACTTTGAGTTGTGTTCTTGGTAAACCTTGTTGA | 1134 | 48.06 | MAFPLLFLFFLPTIISTPNPSNYYSEPALNPIDACWRSNPNWAANRQALADCGVGFGSDATGGKFGSIYVVTDPSDDPEYPEPGTLRFGVIQTEPLWIVFATDMAITLKRELMVNSFKTIDGRGAKVEISNGPCITIQNVSHVIIHGISIHDCKPGKSGRVRSTVTHCGDRRESDGDAISIFSSSHIWIDHCYLARCTDGLIDVIHASTAVTISNNYLTQHDKVILLGHNDDFTDDKIMKVTVAFNRFGDGLVQRMPRVRFGYAHVANNWYNKWEMYAMGGSADPTIFSQGNYFMAPDDSLSKQVTKREVYANGWKKWKWRSSNDVFLNGAYFVQSGWGSCTPFYTQAQAFAVAHGSLAPLLTETAGTLSCVLGKPC | 377 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 33887630 | 33890645 | + | CcPI632755_04g019600.1 | Cco04g1960 | 177185 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g1960 | 377 | PANTHER | PECTATE LYASE 18-RELATED | 19 | 373 | IPR045032 | GO:0030570(InterPro) | |
Cco04g1960 | 377 | SMART | amb_all | 103 | 300 | IPR002022 | - | |
Cco04g1960 | 377 | SUPERFAMILY | Pectin lyase-like | 30 | 368 | IPR011050 | - | |
Cco04g1960 | 377 | Gene3D | - | 29 | 370 | IPR012334 | - | |
Cco04g1960 | 377 | PRINTS | Pollen allergen Amb family signature | 175 | 196 | IPR018082 | - | |
Cco04g1960 | 377 | PRINTS | Pollen allergen Amb family signature | 318 | 342 | IPR018082 | - | |
Cco04g1960 | 377 | PRINTS | Pollen allergen Amb family signature | 348 | 371 | IPR018082 | - | |
Cco04g1960 | 377 | PRINTS | Pollen allergen Amb family signature | 75 | 100 | IPR018082 | - | |
Cco04g1960 | 377 | PRINTS | Pollen allergen Amb family signature | 52 | 69 | IPR018082 | - | |
Cco04g1960 | 377 | PRINTS | Pollen allergen Amb family signature | 255 | 274 | IPR018082 | - | |
Cco04g1960 | 377 | PRINTS | Pollen allergen Amb family signature | 277 | 296 | IPR018082 | - | |
Cco04g1960 | 377 | PRINTS | Pollen allergen Amb family signature | 111 | 127 | IPR018082 | - | |
Cco04g1960 | 377 | Pfam | Pectate lyase | 110 | 294 | IPR002022 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g1960 | Cco-Chr4:33887630 | Cco09g2155 | Cco-Chr9:35942371 | 1.10E-123 | dispersed | |
Cco03g0446 | Cco-Chr3:4778487 | Cco04g1960 | Cco-Chr4:33887630 | 2.50E-165 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g1960 | K01728 | - | csv:101210816 | 700.279 |