Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1960 ATGGCTTTCCCATTATTATTCCTCTTTTTCCTACCTACAATTATCTCCACTCCCAACCCCAGCAACTATTATAGCGAACCAGCCCTCAACCCCATCGACGCATGCTGGCGGAGCAATCCCAATTGGGCAGCCAACCGCCAAGCCTTGGCGGACTGCGGCGTCGGGTTCGGCAGCGACGCCACGGGAGGCAAATTCGGGTCAATCTACGTGGTCACAGACCCATCGGACGACCCGGAATATCCGGAACCCGGAACGCTGCGTTTTGGGGTGATTCAAACGGAGCCGTTATGGATTGTATTCGCAACAGATATGGCGATTACCCTTAAAAGAGAACTGATGGTGAACAGCTTTAAGACCATAGACGGGCGAGGGGCAAAAGTGGAAATTAGTAATGGGCCATGTATTACTATCCAAAACGTGAGCCACGTCATAATCCACGGCATTAGCATCCATGATTGTAAGCCGGGGAAGTCTGGGCGCGTGAGAAGCACCGTCACTCACTGTGGGGACCGCCGCGAGTCGGACGGTGACGCCATTTCTATATTCAGTTCTTCCCATATTTGGATCGACCATTGCTATTTAGCTCGATGCACTGATGGACTCATTGACGTCATCCATGCCTCCACTGCCGTCACCATCTCCAACAATTACCTCACTCAACATGATAAAGTGATCCTTCTTGGTCACAACGATGACTTTACAGATGATAAAATCATGAAAGTGACCGTAGCTTTCAATCGTTTTGGCGATGGGCTTGTTCAAAGAATGCCCAGGGTACGATTTGGGTATGCTCATGTTGCTAATAATTGGTACAACAAGTGGGAAATGTACGCTATGGGTGGCAGTGCAGATCCAACCATCTTCAGCCAAGGAAACTACTTCATGGCTCCCGATGACTCATTGTCAAAACAAGTTACAAAGAGAGAGGTTTATGCGAATGGATGGAAGAAATGGAAATGGAGATCTTCAAATGATGTGTTTTTGAATGGGGCTTATTTTGTCCAATCTGGGTGGGGATCTTGTACGCCTTTCTACACTCAAGCTCAAGCATTTGCTGTTGCTCATGGCTCTTTGGCTCCTCTTTTGACTGAAACTGCTGGCACTTTGAGTTGTGTTCTTGGTAAACCTTGTTGA 1134 48.06 MAFPLLFLFFLPTIISTPNPSNYYSEPALNPIDACWRSNPNWAANRQALADCGVGFGSDATGGKFGSIYVVTDPSDDPEYPEPGTLRFGVIQTEPLWIVFATDMAITLKRELMVNSFKTIDGRGAKVEISNGPCITIQNVSHVIIHGISIHDCKPGKSGRVRSTVTHCGDRRESDGDAISIFSSSHIWIDHCYLARCTDGLIDVIHASTAVTISNNYLTQHDKVILLGHNDDFTDDKIMKVTVAFNRFGDGLVQRMPRVRFGYAHVANNWYNKWEMYAMGGSADPTIFSQGNYFMAPDDSLSKQVTKREVYANGWKKWKWRSSNDVFLNGAYFVQSGWGSCTPFYTQAQAFAVAHGSLAPLLTETAGTLSCVLGKPC 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33887630 33890645 + CcPI632755_04g019600.1 Cco04g1960 177185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1960 377 PANTHER PECTATE LYASE 18-RELATED 19 373 IPR045032 GO:0030570(InterPro)
Cco04g1960 377 SMART amb_all 103 300 IPR002022 -
Cco04g1960 377 SUPERFAMILY Pectin lyase-like 30 368 IPR011050 -
Cco04g1960 377 Gene3D - 29 370 IPR012334 -
Cco04g1960 377 PRINTS Pollen allergen Amb family signature 175 196 IPR018082 -
Cco04g1960 377 PRINTS Pollen allergen Amb family signature 318 342 IPR018082 -
Cco04g1960 377 PRINTS Pollen allergen Amb family signature 348 371 IPR018082 -
Cco04g1960 377 PRINTS Pollen allergen Amb family signature 75 100 IPR018082 -
Cco04g1960 377 PRINTS Pollen allergen Amb family signature 52 69 IPR018082 -
Cco04g1960 377 PRINTS Pollen allergen Amb family signature 255 274 IPR018082 -
Cco04g1960 377 PRINTS Pollen allergen Amb family signature 277 296 IPR018082 -
Cco04g1960 377 PRINTS Pollen allergen Amb family signature 111 127 IPR018082 -
Cco04g1960 377 Pfam Pectate lyase 110 294 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1960 Cco-Chr4:33887630 Cco09g2155 Cco-Chr9:35942371 1.10E-123 dispersed
Cco03g0446 Cco-Chr3:4778487 Cco04g1960 Cco-Chr4:33887630 2.50E-165 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1960 K01728 - csv:101210816 700.279