Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g1962 | ATGGACAAAGGATGGGGTCTAACCCTCCGTGATTCTGATCAGTCAATTGGGTTCTTCTCAAACAAGCCACCACCACCGCCGACCACTGTCAATTCCTTTCAAAGAATGTTTCAAGGTTTAGAATTCCCCGGAAAACTTGGCCGGACTGACGACACCGACGCCACTCCGTCTCTACCCGACGAGAATCGGCTGGCCGTCAACGAGGTGGACTTTTTCTCCGATAAGAAAAGAGTGGTTGATGATCGGGAGGATCAAGACTCTAAACCTTCCACTAATATTATCGCCACCACCGCTATCAATAAAGACGATAAGCCTTTTACCGCTCCCAGAACTTCCTTCAATCTTGTTAACACTGGGTTGCATCTGTTAACTGCTAACACTGGAAGCGATCAATCAACGGTGGATGATGGAATTTCTTCAGATGGTGAAGATAAACGAGCCAAAAACGAGCTAGCGCAACTTCAAGTGGAGCTTCAGCGTATGAACGCTGAGAATCACAAGCTTAGAGACATGCTAAGCCATGTGAGCAACAACTATAGTTCTTTACAAATGCATCTCTTGACCTTAATGCAACAGCAACAACAAAATCAGGCTTCCGAACCCGCTCATGAACGAGAGATTGGGGAGAAGAAATCAACGGAAATAAAACATGAAGTTGGAAGGGTAATGGTACCAAGACAATTTATGGATCTAGGACCAAGTGGGAACAACAACAACAACAACACAGGTGAAAGCGATGAACTATTATGTAATTCCTCGTCGGATGAAAGAACTCGTTCTGGGTCTCCATTGAACAACAACAATACCACCGAAACCGCCTCCAAAAAAAGAGATCACTCGGAAATCACGGCTCCTTCCGATCACGAAAATTCCAAAAGACCCAACCCCAGAGAAGAAAGCCCCGAATCAGAATCTCAAGGTTGGGGTGGTCCGAACCATAAGCCCCCTCGGTTCAACTCTTCTAAACCACTTGACCAATCAACCGAAGCCACCATGCGTAAAGCCCGTGTCTCAGTCCGTGCTCGATCCGAAGCTCCCATGATTTCTGATGGGTGTCAATGGCGAAAATATGGCCAAAAAATGGCTAAAGGAAACCCATGTCCACGAGCCTATTATCGCTGCACAATGGCCGTGGGTTGCCCAGTTCGCAAACAAGTCCAACGTTGTGCTGAAGATAGGAGTATATTGATAACAACTTACGAAGGCAACCACAACCATCCACTTCCGCCGGCAGCAATGGCCATGGCGTCAACTACGACGGCGGCGGCTACCATGTTGTTATCAGGGTCTATGTCAAGTGCAGACCATAATTTAATGAACCCAAATTTATTGGCTCGAGCCATACTTCCATGTTCTTCAAGCATGGCTACAATTTCAGCTTCGGCTCCATTTCCAACCATCACATTAGACCTCACTCACACTCCAAACCCATTACAGTTTCAAAGACCCGCAGCGACGCCTTTCCACGTGCCATTCCCCGGCGGACAACCACCGTCGGCCGCCGTTGCCGCCCAGTTGCCTCAAGTTTTGGGGCAAGCGTTGTATAATAATCAATCAAAATTCTCGGGGCTACAGCTTTCTCATGAGATGGGAGCTAATTCCTCTCATTTGGGTCATCACCAAATTACACAACCGGCGACTCCGGCCCAGCCTGGTGGTGCTTCTTTTGCCGACACGTTGAGTGCCGCCACCGCCGCTATTACCGCCGATCCTAATTTCACCGCCGCTCTCGCCGCCGCTATCTCCTCCATCATCGGCGGAGCTCATTCGAATAATAATAGCAATACAAATACCACCAATAATACTACAACAACAAACAACAACAACGGAAGCAGCAACAACAGCAAAATTAGCAGCTTCCCTGGAAATTAA | 1872 | 47.81 | MDKGWGLTLRDSDQSIGFFSNKPPPPPTTVNSFQRMFQGLEFPGKLGRTDDTDATPSLPDENRLAVNEVDFFSDKKRVVDDREDQDSKPSTNIIATTAINKDDKPFTAPRTSFNLVNTGLHLLTANTGSDQSTVDDGISSDGEDKRAKNELAQLQVELQRMNAENHKLRDMLSHVSNNYSSLQMHLLTLMQQQQQNQASEPAHEREIGEKKSTEIKHEVGRVMVPRQFMDLGPSGNNNNNNTGESDELLCNSSSDERTRSGSPLNNNNTTETASKKRDHSEITAPSDHENSKRPNPREESPESESQGWGGPNHKPPRFNSSKPLDQSTEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRSILITTYEGNHNHPLPPAAMAMASTTTAAATMLLSGSMSSADHNLMNPNLLARAILPCSSSMATISASAPFPTITLDLTHTPNPLQFQRPAATPFHVPFPGGQPPSAAVAAQLPQVLGQALYNNQSKFSGLQLSHEMGANSSHLGHHQITQPATPAQPGGASFADTLSAATAAITADPNFTAALAAAISSIIGGAHSNNNSNTNTTNNTTTTNNNNGSSNNSKISSFPGN | 623 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 33908900 | 33911266 | + | CcPI632755_04g019620.1 | Cco04g1962 | 177187 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g1962 | 623 | MobiDBLite | consensus disorder prediction | 231 | 271 | - | - | |
Cco04g1962 | 623 | Pfam | WRKY DNA -binding domain | 350 | 407 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco04g1962 | 623 | Coils | Coil | 144 | 178 | - | - | |
Cco04g1962 | 623 | MobiDBLite | consensus disorder prediction | 272 | 300 | - | - | |
Cco04g1962 | 623 | SMART | WRKY_cls | 348 | 408 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco04g1962 | 623 | Gene3D | WRKY domain | 333 | 410 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco04g1962 | 623 | MobiDBLite | consensus disorder prediction | 587 | 623 | - | - | |
Cco04g1962 | 623 | MobiDBLite | consensus disorder prediction | 319 | 333 | - | - | |
Cco04g1962 | 623 | MobiDBLite | consensus disorder prediction | 533 | 550 | - | - | |
Cco04g1962 | 623 | MobiDBLite | consensus disorder prediction | 202 | 223 | - | - | |
Cco04g1962 | 623 | PANTHER | WRKY TRANSCRIPTION FACTOR 36-RELATED | 132 | 592 | IPR044810 | GO:0003700(InterPro) | |
Cco04g1962 | 623 | MobiDBLite | consensus disorder prediction | 533 | 554 | - | - | |
Cco04g1962 | 623 | MobiDBLite | consensus disorder prediction | 191 | 338 | - | - | |
Cco04g1962 | 623 | FunFam | probable WRKY transcription factor 31 | 333 | 410 | - | - | |
Cco04g1962 | 623 | SUPERFAMILY | WRKY DNA-binding domain | 341 | 409 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco04g1962 | 623 | ProSiteProfiles | WRKY domain profile. | 343 | 409 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g1962 | Cco-Chr4:33908900 | Cco06g1839 | Cco-Chr6:28658087 | 8.30E-41 | dispersed | |
Cco10g0443 | Cco-Chr10:5212577 | Cco04g1962 | Cco-Chr4:33908900 | 3.90E-21 | wgd | |
Cco02g0208 | Cco-Chr2:2028161 | Cco04g1962 | Cco-Chr4:33908900 | 4.10E-113 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59130 | PF03106 | WRKY | 3.60E-24 | CL0274 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g1962 | - | - | - | 0.0 |