Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1971 ATGGGGAAGAAGAAGCTGAGCCTGCAAAATCAAGGCTCTCATGTTATATTAGACAATGGATTGTTGAAGGTGACGATATCAAACCCGCAAGGGTATGTAACTGGCATCATGTATGGGGGCATGGACAATCTGTTAGATGTAAAATCAAGCGAGTCTAAAAGAGGATATTGGGATATCAACTGGAGTTGGCCTGGAGGCAAGGACAGATACCAATTGCTCAAGGGATCTGAATTCAATGTCATCAACACAAGTGATGACACGATTGAGATATCATTCAGGAGAGTTTTCAACCCGTCAACTCAAGGCAACAAACTCCCACTTGCTGTGGACATAAGGTACATAATGAGGACTGGTATTCCAGGCTTCTATTGCTATGCAATCTACGAGCACCCATCAGATGGTCGGGCTTTCGATCTTGCTCAGACAAGAATGGTGTTTAAACTGCGACAAGAGAAGTTCCATTACATGGCAATTTCAGATGAGAAGCAAAGAATAATGCCAATGCCAGAGGATTTGCATCCAGGCAGAGGTGAACAACTAATTGTACCTGAGTCAGTTCTGCTTGTAAATCCCATTAATCCTGATCTGAAAGGAGAGGTAGATGATAAGTACCAATACTCGATGGATAACAAAGATGGAGGAGTTCATGGATGGATAAGTTCCAGCCCAAACAACTTAGGTTTTTGGATAGTTTTTCCAAGCCACGAGTTCCAAAATGGAGGTCCTACGAAGCAAAATCTGACAGTCCATACCGGTCCTACATGTCTTGCTATGTTTCATGGAACCCATTACATTGGAGAAGATATACTCACACATATTAAGGAGGGAGAAACATGGAGAAAGGTCTTTGGTCCTATTCTTGTATACCTTAACTCCACCTCAGATGTATCAGAGGCACACAATTTATGGATAGATGCAAAAGAACAGAGAGTGCTAGAGGAAACAGCATGGCCGTACAATTTTGTCTCTTCATCTTTCTATTTCATGGCAAATGAACGTGGTTCCATTTCGGGAAGACTATTAGTCCAAGACAGGTTTATTTCAAGTTCCCCCATCCTTGCGAGAGATGCACATATTGGTTTATCCGCTGCTAGAGAAGAAGGTGCCTGGCAAACAGAAAGCAAGGAATATCAATTTTGGGTAAAAACAGATTCCAAAGGAGATTTCACTATAAGAAACATTATTCCTGGAGTCTATGGACTTCATGGTTGGGTACCTGGATTCATTGGTGATTATCTTCACAAATCACTAGTAACCGTATCTGCAGGATCTCATACCCATCTTGGAATTCTGACCTATAGTCCTCTCAGAGATGGTCCTACTTTATGGGAGATTGGTTATCCTGACCGTACAGCTAATAGTTTCTATGTTCCTGATGTGAATCCGATGTATGTCAACAAGCTATTCCTTCACAGCCCAGAAAAGTTCAGGCAATATGGTTTATGGGAGGGATACAGTGATTTATATCCAATAAATGACCAAGTTTTCACCGTGGGTATCAATGATCCGAAAAAAGACTGGTTCTTTGCTCAAGTTTGCAGAGGAGGGGAAGACGGTAAGTATGTTGCGGCAACATGGACTATTAAGTTCAACATGACATCCTTAAGTGATGGAACTTACCGGCTGAGGTTGGCCATTGCATCTGCAACACGCTCGGACTTGAAGATTAATGTCAACTCAATGGGGTCGGAGTCGTCTCTGGTCTTCCAGCTGATGAATCTGGGAATGGATAACACAGTTTGTCGACATGGAATTCATGGACTGTATCGAATTTATAGTATCGACATTCCATCTTCACTGCTTGTTAAGGGAGATAACTCCATATTTCTCACGCAGGCAAGGAATGGAGATCCACTCTGTGGAGTTCTATACGATTATTTAAGATTGGAAGCTCCTGATACTCCATGA 1908 42.19 MGKKKLSLQNQGSHVILDNGLLKVTISNPQGYVTGIMYGGMDNLLDVKSSESKRGYWDINWSWPGGKDRYQLLKGSEFNVINTSDDTIEISFRRVFNPSTQGNKLPLAVDIRYIMRTGIPGFYCYAIYEHPSDGRAFDLAQTRMVFKLRQEKFHYMAISDEKQRIMPMPEDLHPGRGEQLIVPESVLLVNPINPDLKGEVDDKYQYSMDNKDGGVHGWISSSPNNLGFWIVFPSHEFQNGGPTKQNLTVHTGPTCLAMFHGTHYIGEDILTHIKEGETWRKVFGPILVYLNSTSDVSEAHNLWIDAKEQRVLEETAWPYNFVSSSFYFMANERGSISGRLLVQDRFISSSPILARDAHIGLSAAREEGAWQTESKEYQFWVKTDSKGDFTIRNIIPGVYGLHGWVPGFIGDYLHKSLVTVSAGSHTHLGILTYSPLRDGPTLWEIGYPDRTANSFYVPDVNPMYVNKLFLHSPEKFRQYGLWEGYSDLYPINDQVFTVGINDPKKDWFFAQVCRGGEDGKYVAATWTIKFNMTSLSDGTYRLRLAIASATRSDLKINVNSMGSESSLVFQLMNLGMDNTVCRHGIHGLYRIYSIDIPSSLLVKGDNSIFLTQARNGDPLCGVLYDYLRLEAPDTP 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33967151 33970729 + CcPI632755_04g019710.1 Cco04g1971 177196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1971 635 CDD RGL4_C 443 630 - -
Cco04g1971 635 CDD RGL4_M 332 429 IPR029413 -
Cco04g1971 635 Gene3D - 329 431 - -
Cco04g1971 635 SUPERFAMILY Galactose-binding domain-like 438 630 IPR008979 -
Cco04g1971 635 CDD RGL4_N 6 299 - -
Cco04g1971 635 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 3 633 IPR051850 -
Cco04g1971 635 SUPERFAMILY Starch-binding domain-like 327 430 IPR013784 GO:0030246(InterPro)
Cco04g1971 635 Gene3D - 439 629 - -
Cco04g1971 635 SUPERFAMILY Galactose mutarotase-like 8 294 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Cco04g1971 635 Pfam Polysaccharide lyase family 4, domain III 441 629 IPR029411 -
Cco04g1971 635 Gene3D - 6 303 IPR014718 GO:0030246(InterPro)
Cco04g1971 635 Pfam Rhamnogalacturonate lyase family 3 200 IPR010325 -
Cco04g1971 635 Pfam Polysaccharide lyase family 4, domain II 357 427 IPR029413 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1971 Cco-Chr4:33967151 Cco11g1523 Cco-Chr11:28077628 1.70E-198 dispersed
Cco04g1971 Cco-Chr4:33967151 Cco08g1308 Cco-Chr8:24900713 7.30E-202 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1971 K18195 - csv:101220336 1232.24