Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g1971 | ATGGGGAAGAAGAAGCTGAGCCTGCAAAATCAAGGCTCTCATGTTATATTAGACAATGGATTGTTGAAGGTGACGATATCAAACCCGCAAGGGTATGTAACTGGCATCATGTATGGGGGCATGGACAATCTGTTAGATGTAAAATCAAGCGAGTCTAAAAGAGGATATTGGGATATCAACTGGAGTTGGCCTGGAGGCAAGGACAGATACCAATTGCTCAAGGGATCTGAATTCAATGTCATCAACACAAGTGATGACACGATTGAGATATCATTCAGGAGAGTTTTCAACCCGTCAACTCAAGGCAACAAACTCCCACTTGCTGTGGACATAAGGTACATAATGAGGACTGGTATTCCAGGCTTCTATTGCTATGCAATCTACGAGCACCCATCAGATGGTCGGGCTTTCGATCTTGCTCAGACAAGAATGGTGTTTAAACTGCGACAAGAGAAGTTCCATTACATGGCAATTTCAGATGAGAAGCAAAGAATAATGCCAATGCCAGAGGATTTGCATCCAGGCAGAGGTGAACAACTAATTGTACCTGAGTCAGTTCTGCTTGTAAATCCCATTAATCCTGATCTGAAAGGAGAGGTAGATGATAAGTACCAATACTCGATGGATAACAAAGATGGAGGAGTTCATGGATGGATAAGTTCCAGCCCAAACAACTTAGGTTTTTGGATAGTTTTTCCAAGCCACGAGTTCCAAAATGGAGGTCCTACGAAGCAAAATCTGACAGTCCATACCGGTCCTACATGTCTTGCTATGTTTCATGGAACCCATTACATTGGAGAAGATATACTCACACATATTAAGGAGGGAGAAACATGGAGAAAGGTCTTTGGTCCTATTCTTGTATACCTTAACTCCACCTCAGATGTATCAGAGGCACACAATTTATGGATAGATGCAAAAGAACAGAGAGTGCTAGAGGAAACAGCATGGCCGTACAATTTTGTCTCTTCATCTTTCTATTTCATGGCAAATGAACGTGGTTCCATTTCGGGAAGACTATTAGTCCAAGACAGGTTTATTTCAAGTTCCCCCATCCTTGCGAGAGATGCACATATTGGTTTATCCGCTGCTAGAGAAGAAGGTGCCTGGCAAACAGAAAGCAAGGAATATCAATTTTGGGTAAAAACAGATTCCAAAGGAGATTTCACTATAAGAAACATTATTCCTGGAGTCTATGGACTTCATGGTTGGGTACCTGGATTCATTGGTGATTATCTTCACAAATCACTAGTAACCGTATCTGCAGGATCTCATACCCATCTTGGAATTCTGACCTATAGTCCTCTCAGAGATGGTCCTACTTTATGGGAGATTGGTTATCCTGACCGTACAGCTAATAGTTTCTATGTTCCTGATGTGAATCCGATGTATGTCAACAAGCTATTCCTTCACAGCCCAGAAAAGTTCAGGCAATATGGTTTATGGGAGGGATACAGTGATTTATATCCAATAAATGACCAAGTTTTCACCGTGGGTATCAATGATCCGAAAAAAGACTGGTTCTTTGCTCAAGTTTGCAGAGGAGGGGAAGACGGTAAGTATGTTGCGGCAACATGGACTATTAAGTTCAACATGACATCCTTAAGTGATGGAACTTACCGGCTGAGGTTGGCCATTGCATCTGCAACACGCTCGGACTTGAAGATTAATGTCAACTCAATGGGGTCGGAGTCGTCTCTGGTCTTCCAGCTGATGAATCTGGGAATGGATAACACAGTTTGTCGACATGGAATTCATGGACTGTATCGAATTTATAGTATCGACATTCCATCTTCACTGCTTGTTAAGGGAGATAACTCCATATTTCTCACGCAGGCAAGGAATGGAGATCCACTCTGTGGAGTTCTATACGATTATTTAAGATTGGAAGCTCCTGATACTCCATGA | 1908 | 42.19 | MGKKKLSLQNQGSHVILDNGLLKVTISNPQGYVTGIMYGGMDNLLDVKSSESKRGYWDINWSWPGGKDRYQLLKGSEFNVINTSDDTIEISFRRVFNPSTQGNKLPLAVDIRYIMRTGIPGFYCYAIYEHPSDGRAFDLAQTRMVFKLRQEKFHYMAISDEKQRIMPMPEDLHPGRGEQLIVPESVLLVNPINPDLKGEVDDKYQYSMDNKDGGVHGWISSSPNNLGFWIVFPSHEFQNGGPTKQNLTVHTGPTCLAMFHGTHYIGEDILTHIKEGETWRKVFGPILVYLNSTSDVSEAHNLWIDAKEQRVLEETAWPYNFVSSSFYFMANERGSISGRLLVQDRFISSSPILARDAHIGLSAAREEGAWQTESKEYQFWVKTDSKGDFTIRNIIPGVYGLHGWVPGFIGDYLHKSLVTVSAGSHTHLGILTYSPLRDGPTLWEIGYPDRTANSFYVPDVNPMYVNKLFLHSPEKFRQYGLWEGYSDLYPINDQVFTVGINDPKKDWFFAQVCRGGEDGKYVAATWTIKFNMTSLSDGTYRLRLAIASATRSDLKINVNSMGSESSLVFQLMNLGMDNTVCRHGIHGLYRIYSIDIPSSLLVKGDNSIFLTQARNGDPLCGVLYDYLRLEAPDTP | 635 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 33967151 | 33970729 | + | CcPI632755_04g019710.1 | Cco04g1971 | 177196 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g1971 | 635 | CDD | RGL4_C | 443 | 630 | - | - | |
Cco04g1971 | 635 | CDD | RGL4_M | 332 | 429 | IPR029413 | - | |
Cco04g1971 | 635 | Gene3D | - | 329 | 431 | - | - | |
Cco04g1971 | 635 | SUPERFAMILY | Galactose-binding domain-like | 438 | 630 | IPR008979 | - | |
Cco04g1971 | 635 | CDD | RGL4_N | 6 | 299 | - | - | |
Cco04g1971 | 635 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 3 | 633 | IPR051850 | - | |
Cco04g1971 | 635 | SUPERFAMILY | Starch-binding domain-like | 327 | 430 | IPR013784 | GO:0030246(InterPro) | |
Cco04g1971 | 635 | Gene3D | - | 439 | 629 | - | - | |
Cco04g1971 | 635 | SUPERFAMILY | Galactose mutarotase-like | 8 | 294 | IPR011013 | GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro) | |
Cco04g1971 | 635 | Pfam | Polysaccharide lyase family 4, domain III | 441 | 629 | IPR029411 | - | |
Cco04g1971 | 635 | Gene3D | - | 6 | 303 | IPR014718 | GO:0030246(InterPro) | |
Cco04g1971 | 635 | Pfam | Rhamnogalacturonate lyase family | 3 | 200 | IPR010325 | - | |
Cco04g1971 | 635 | Pfam | Polysaccharide lyase family 4, domain II | 357 | 427 | IPR029413 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g1971 | Cco-Chr4:33967151 | Cco11g1523 | Cco-Chr11:28077628 | 1.70E-198 | dispersed | |
Cco04g1971 | Cco-Chr4:33967151 | Cco08g1308 | Cco-Chr8:24900713 | 7.30E-202 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g1971 | K18195 | - | csv:101220336 | 1232.24 |