Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1981 ATGGCTTGCTCAAACTTCACAATGTGGGTGTCCTCAAAACCGTCTTCATCCGATGCCTCCGCTCTTTCTTTTGGGCCTTTTAATCCTCTTCAACTTCCTTCGCAAGGCTCTGCCTCGCGATCCTCATCTGTTACTCCGATTCAGTGCGGCCTCCGTGAGCTTCGAGAACGGATTGATTCAGTGAAGAACACCCAGAAAATTACTGAAGCTATGAAGCTTGTTGCTGCTGCCAAAGTGCGTAGAGCACAAGAAGCTGTTGTTAATGGAAGACCATTCTCGGAGTCTCTAGTTGAAGTTCTTTACAATATCAACGAGCAGCTCCAAACCGAAGATATTGATGTTCCTCTCACAAAAGTCCGACCAGTCAAGAAGGTTGCTTTGATTGTTGTAACAGGGGATCGAGGCCTTTGCGGCAGTTTTAATAACATGATCATCAAAAAGGCAGAATCCAGAATCGCAGAATTGAAGACCCTTGGCCTTGATTATACAGTTATTAGCGTCGGCAAGAAGGGGAATTCTTATTTCCTTCGCCGGCCTTACATCCCAGTAGATAGATTTCTTGAGGGCGGTTCACTTCCAACAGCTAAAGAAGCTCAAGCCATTGCAGACGATGTTTTTTCCCTCTTTATTAGCGAGGAGGTCGACAAAGTCGAGCTTCTGTACACCAAATTCGTGTCATTAGTTAAATCAGACCCTGTGATCCACACTCTGCTTCCATTGTCACCTAAAGGAGAGATTTGTGATATTAATGGTGTTTGTGTTGATGCCGCAGAGGACGAGTTCTTCAGATTGACGACAAAAGAAGGAAAATTAACCGTAGAGAGAGATGCAGTGAGGACAAAAACCTCAGATTTCTCCCCAATTTTACAGTTTGAGCAGGACCCAGTTCAGATTCTTGATGCTTTATTACCTCTGTATTTGAACAGTCAAATTTTGAGGTCATTGCAGGAATCATTAGCTAGTGAACTTGCGGCCAGAATGAGTGCCATGAGCAATGCAACTGATAATGCAAGCGAGTTGAAGAAGACACTCTCTATTGTTTACAACAGACAGCGGCAAGCAAAAATCACCGGCGAGATTTTGGAGATTGTTGCTGGTGCCAACGCTTTAACTTGA 1116 44.27 MACSNFTMWVSSKPSSSDASALSFGPFNPLQLPSQGSASRSSSVTPIQCGLRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSESLVEVLYNINEQLQTEDIDVPLTKVRPVKKVALIVVTGDRGLCGSFNNMIIKKAESRIAELKTLGLDYTVISVGKKGNSYFLRRPYIPVDRFLEGGSLPTAKEAQAIADDVFSLFISEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDINGVCVDAAEDEFFRLTTKEGKLTVERDAVRTKTSDFSPILQFEQDPVQILDALLPLYLNSQILRSLQESLASELAARMSAMSNATDNASELKKTLSIVYNRQRQAKITGEILEIVAGANALT 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34023254 34024369 - CcPI632755_04g019810.1 Cco04g1981 177206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1981 371 FunFam ATP synthase gamma chain, chloroplastic 49 116 - -
Cco04g1981 371 NCBIfam ATP synthase F1 subunit gamma 50 370 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cco04g1981 371 Hamap ATP synthase gamma chain [atpG]. 48 370 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cco04g1981 371 Pfam ATP synthase 51 370 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cco04g1981 371 Gene3D ATP synthase, gamma subunit, helix hairpin domain 50 117 - -
Cco04g1981 371 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 50 370 IPR035968 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cco04g1981 371 Gene3D - 118 241 - -
Cco04g1981 371 Coils Coil 51 71 - -
Cco04g1981 371 FunFam ATP synthase gamma chain, chloroplastic 118 241 - -
Cco04g1981 371 CDD F1-ATPase_gamma 51 367 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cco04g1981 371 PRINTS ATP synthase gamma subunit signature 348 369 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cco04g1981 371 PRINTS ATP synthase gamma subunit signature 215 232 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cco04g1981 371 PRINTS ATP synthase gamma subunit signature 122 141 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cco04g1981 371 PRINTS ATP synthase gamma subunit signature 317 336 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cco04g1981 371 ProSitePatterns ATP synthase gamma subunit signature. 356 369 IPR023632 -
Cco04g1981 371 Gene3D ATP synthase, gamma subunit, helix hairpin domain 268 370 - -
Cco04g1981 371 PANTHER ATP SYNTHASE GAMMA CHAIN 1 370 IPR000131 GO:0000275(PANTHER)|GO:0009535(PANTHER)|GO:0015986(InterPro)|GO:0015986(PANTHER)|GO:0045261(InterPro)|GO:0046933(InterPro)|GO:0046933(PANTHER)
Cco04g1981 371 FunFam ATP synthase gamma chain, chloroplastic 267 370 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0501 Cco-Chr10:6012963 Cco04g1981 Cco-Chr4:34023254 3.90E-104 wgd
Cco03g0463 Cco-Chr3:4915595 Cco04g1981 Cco-Chr4:34023254 3.60E-172 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1981 K02115 - csv:101218747 675.241