Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1994 ATGATCTCTTCACTGAGGCTTACATCTTCCAATTACACTTCCTCTGAAATTTTGAACAGAAAATCTCCAGTTCTGAGGCCGAATCTTCCATTGCAGTCCCCGGATTGCAGTGCCCTTAAACATGTCGATCGGTCTCTTTCTACCAACAAACCACTTCACATCTCGTCCGTTGAAAATCTTTCTTTGCCCACAAAATCATTGGAGCGTTCGACGGTGTGCATGGCTTATGAGGCCGAATCGCGGCCTCTGCAGATTAACATTGAGCTTCCTGATGAACAAACGGCTCAGAAACTCAAAATTGGACTCTATTTCGCCACTTGGTGGGCTTTGAATGTGGTGTTCAATGTCTACAACAAGAAGGTTCTTAATGCCTTCCCTTATCCTTGGCTCACTTCCACTCTCTCCCTCGCCGCTGGATCGCTAATGATGCTCGTTTCTTGGGCCACTCGAATGGTCGATGCTCCCAAAACCGATTTAGATTTCTGGAAATCCCTATTTCCAGTCGCAGTGGCACATACGATTGGGCATGTTGCAGCAACTGTGAGCATGTCCAAAGTTGCAGTCTCATTCACTCACGTAATCAAGAGTGGGGAGCCGGCTTTTAGCGTGCTGGTCTCTAGGTTTCTGTTGGGTGAGATGTTTCCATTGCCTGTTTACTTATCTCTTATCCCAATCATCGGAGGGTGCGCTCTTTCCGCCATTACTGAGCTCAATTTCAACATGATTGGTTTCTCGGGAGCGATGGTATCGAACTTGGCATTTGTGTTTAGAAACATATTTTCGAAGAAAGGGATGAAGGGAAAGTCAGTTAGTGGGATGAATTACTATGCTTGCCTCTCATTGCTCTCTCTGCTAATTCTTACTCCTTTCGCCATTGTTGTGGAGGGACCCAAGTTGTGGGCTGAAGGATTCCAAAAGGCTCTCTCTCAAATTGGTCCCAATTTCATTTGGTGGTTGGGAGCTCAAAGTATGTTCTATCACTTGTACAATCAAGTGTCTTACATGTCTCTTGATCAGATATCGCCATTGACATTCAGCGTTGGTAACACAATGAAGAGAATATTCGTAATAGTATCGTCCATTATCATCTTCCACACGCCTATCCGATCCGTAAACGCCATTGGAGCTGCCATTGCAATCCTCGGAACGTTCCTCTACTCGCAGGCAAAGCTGTGA 1176 45.66 MISSLRLTSSNYTSSEILNRKSPVLRPNLPLQSPDCSALKHVDRSLSTNKPLHISSVENLSLPTKSLERSTVCMAYEAESRPLQINIELPDEQTAQKLKIGLYFATWWALNVVFNVYNKKVLNAFPYPWLTSTLSLAAGSLMMLVSWATRMVDAPKTDLDFWKSLFPVAVAHTIGHVAATVSMSKVAVSFTHVIKSGEPAFSVLVSRFLLGEMFPLPVYLSLIPIIGGCALSAITELNFNMIGFSGAMVSNLAFVFRNIFSKKGMKGKSVSGMNYYACLSLLSLLILTPFAIVVEGPKLWAEGFQKALSQIGPNFIWWLGAQSMFYHLYNQVSYMSLDQISPLTFSVGNTMKRIFVIVSSIIIFHTPIRSVNAIGAAIAILGTFLYSQAKL 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34114037 34115896 - CcPI632755_04g019940.1 Cco04g1994 177219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1994 391 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 98 390 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Cco04g1994 391 Pfam Triose-phosphate Transporter family 98 387 IPR004853 -
Cco04g1994 391 SUPERFAMILY Multidrug resistance efflux transporter EmrE 290 388 - -
Cco04g1994 391 PANTHER SOLUTE CARRIER FAMILY 35 96 390 IPR050186 GO:0005794(PANTHER)|GO:0015120(PANTHER)|GO:0015297(PANTHER)|GO:0071917(PANTHER)
Cco04g1994 391 SUPERFAMILY Multidrug resistance efflux transporter EmrE 140 234 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1994 Cco-Chr4:34114037 Cco05g1659 Cco-Chr5:23174210 1.20E-154 dispersed
Cco04g2111 Cco-Chr4:34973926 Cco04g1994 Cco-Chr4:34114037 5.90E-63 transposed
Cco05g0293 Cco-Chr5:2349812 Cco04g1994 Cco-Chr4:34114037 1.70E-85 transposed
Cco05g2643 Cco-Chr5:34550158 Cco04g1994 Cco-Chr4:34114037 6.60E-66 transposed
Cco10g0522 Cco-Chr10:6216407 Cco04g1994 Cco-Chr4:34114037 4.60E-154 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1994 K15283 - csv:101216621 681.789