Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1995 ATGTTGTGTTGTGTTTTGTTTACTTTAGTGAAGCCTGGAAGGGAATATATATTGTATATTGGAGAGCGAAAGATGTTCGACCCAGATATGTTTGATACTCACCATCATATGCTTGTGGAGTTGGAAAATATGAGAGATGATGATTTCGAGACCAAATCTGGCGCAGAAATCTTAGAACCTGCTTGTGGAACTGACCAACAACGCTCCAAGAAGAAACGTTACAATCGCCATACACAACATCAAATCCAAGAAATGGAAGCATTCTTCAAGGAATGTCCTCACCCAGATGACAAGCAGAGGATGGAACTGAGCCGCGAGCTGGGGTTGGAGCCATTGCAAGTTAAGTTTTGGTTTCAAAACAAACGCACCCAGATGAAGGCTCAACATGAGAGACATGAAAACGCAATTTTGAAGGCAGAAAATGAGAAGCTTCGTGCTGAGAATATCCGTTATAGAGAAGCATTCGCCCATTCAACTTGCCCTAACTGCGGCTCTTCCTCAACTGCCCTCGGCGAAATGTCCTTTGACGACCAACATTTGCGCATTGAAAATTCCCGCTTGCGAGATGAGATCGAGCGAATGAGTGGATATGGGTCGAAATGCACAAAGCCGTACTATCAACTTCCGACGAATGCTCCGACGCGATCTCTGGAGTTGGGCATCACAAATTTCGGTGCACAGTCGTCGGGATTCGTGGGAGAGATGTACGGAGCGGCGGACTTTTTCCGGTCGATATCGAGGCCTTCAGAAGGCGAGAAACCGGTGATCGTTGAGCTGGCGGTTTCGGGGATGGAGGAATTGAGGAGAATGGCTCAGGGCGGGGAGCCGTTATGGGTTGCGGGTGATGGGAAGTCGTCGAGCGAAGTGGTTCTTAACGAAGCGGAGTATTTGAGCAGTTTCGGAGGCGGAATTGGGGGAAAACCCATGGGCTTTAGAACTGAGGCTTCAAGAGTTTCGGCTATTGTGTTCATGAACCATATGAAGCTGGTGGATATTTTCATGGATGCTACGCAATGGTCAACCGTGTTCTGCGGCATTGTTTCGAGAGCATCCATTGTGGAAATCCTTTCGCCTGGCCTACCAGGAAACTTCAACGGGGCCTTGCATGTGATGAGCGCTGAATTCCAAGTCCCATCGCCCCTTGTTCCGACTCGTGAAAACTACTTCGTAAGATACTGCAAACAACAAAGCGATGGATTATGGGCGGTGGCTGATGTTTCCTTAGACACCTTACGCCCTTCTCTCATCCCTAACACCCGAAGAAGACCCTCTGGTTGCTTAATTCAAGAATTGCCCAACGGCTATTCAAAGATCACTTGGGTCGAACATGTAGAGGTCGACGAAACTGGCGTCCCCACAATGTACAGACCCCTCGTTAACTCCGGCCTCGCTTTCGGGGCTAAGCGATGGGTCGCGGCCTTGGATCGCCAATCTGAGCGCTTCGCCACTTCAATCGCCACCACCATTCCCACCGGCGATTTACGCGTTATATCGAGTATTGAAGGCAGGAAGAGTATGCTGAAGCTAGCGGAGAGAATGGTGACGAGCTTCTGCGCCGGTGTCGGCGCGTCGAGTGTACACGCTTGGACGGCGTTACCTGCAGCTGCCGGCGATGAGGTTCGTGTTGTGACGAGGAAAAGCACCGACGAACCAGGGAGACCACCCGGCGTTGTACTGAGCGCCGCCACTTCTTTTTGGATCCCTGTTCCACCTAAGGTCGTGTTTGATTTCCTCCGGAAAGAGAAATCTCGAAGCGAGTGGGATATTCTGTCGAATGGGGGATTAGTTCAGGAAATGGCTCACATAGCCAACGGCCGCCACTCCGGGAATTGTGTCTCCTTGCTTCGTGTCAACAGTGCAAATTCGAGCCAGAGCAATATGCTGATACTACAAGAAAGTTGCACCGACTCAACGGGATCGTACGTTATTTATGCTCCGGTGGACACCGTTGCCATGAACGTGGTGCTAAGCGGTTGCGATCCGGATTACGTGGCACTTCTACCGTCGGGATTTGCCATACTTCCAGACGGACCCGGTGGAGGAGGCAACAACGGCGACGGAATTCTTGAGCTGGGATCCGGTGGGTCACTCATCACGGTTGCATTTCAAATCCTGGTTGATTCAGTTCCGACGGCTAGACTTTCAATTGGATCAGTGGCCACCGTGAACAGTCTGATCAAATGCACGGTTGAGAGGATCAGAGCCGCTGTGATGCGCGAAAACCCATGA 2229 50.7 MLCCVLFTLVKPGREYILYIGERKMFDPDMFDTHHHMLVELENMRDDDFETKSGAEILEPACGTDQQRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFWFQNKRTQMKAQHERHENAILKAENEKLRAENIRYREAFAHSTCPNCGSSSTALGEMSFDDQHLRIENSRLRDEIERMSGYGSKCTKPYYQLPTNAPTRSLELGITNFGAQSSGFVGEMYGAADFFRSISRPSEGEKPVIVELAVSGMEELRRMAQGGEPLWVAGDGKSSSEVVLNEAEYLSSFGGGIGGKPMGFRTEASRVSAIVFMNHMKLVDIFMDATQWSTVFCGIVSRASIVEILSPGLPGNFNGALHVMSAEFQVPSPLVPTRENYFVRYCKQQSDGLWAVADVSLDTLRPSLIPNTRRRPSGCLIQELPNGYSKITWVEHVEVDETGVPTMYRPLVNSGLAFGAKRWVAALDRQSERFATSIATTIPTGDLRVISSIEGRKSMLKLAERMVTSFCAGVGASSVHAWTALPAAAGDEVRVVTRKSTDEPGRPPGVVLSAATSFWIPVPPKVVFDFLRKEKSRSEWDILSNGGLVQEMAHIANGRHSGNCVSLLRVNSANSSQSNMLILQESCTDSTGSYVIYAPVDTVAMNVVLSGCDPDYVALLPSGFAILPDGPGGGGNNGDGILELGSGGSLITVAFQILVDSVPTARLSIGSVATVNSLIKCTVERIRAAVMRENP 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34122675 34129477 - CcPI632755_04g019950.1 Cco04g1995 177220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1995 742 FunFam Homeobox-leucine zipper protein GLABRA 2 258 479 - -
Cco04g1995 742 Coils Coil 122 154 - -
Cco04g1995 742 Gene3D - 60 144 - -
Cco04g1995 742 FunFam Homeobox-leucine zipper protein HDG1 60 144 - -
Cco04g1995 742 ProSiteProfiles 'Homeobox' domain profile. 68 128 IPR001356 GO:0003677(InterPro)
Cco04g1995 742 CDD START_ArGLABRA2_like 253 479 - -
Cco04g1995 742 SMART HOX_1 69 132 IPR001356 GO:0003677(InterPro)
Cco04g1995 742 CDD homeodomain 70 129 IPR001356 GO:0003677(InterPro)
Cco04g1995 742 ProSitePatterns 'Homeobox' domain signature. 103 126 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cco04g1995 742 SUPERFAMILY Bet v1-like 252 481 - -
Cco04g1995 742 SMART START_1 258 480 IPR002913 GO:0008289(InterPro)
Cco04g1995 742 ProSiteProfiles START domain profile. 249 483 IPR002913 GO:0008289(InterPro)
Cco04g1995 742 SUPERFAMILY Bet v1-like 502 734 - -
Cco04g1995 742 Pfam Homeodomain 71 126 IPR001356 GO:0003677(InterPro)
Cco04g1995 742 Gene3D - 308 481 IPR023393 -
Cco04g1995 742 Pfam START domain 260 479 IPR002913 GO:0008289(InterPro)
Cco04g1995 742 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 65 737 IPR042160 -
Cco04g1995 742 SUPERFAMILY Homeodomain-like 60 128 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0929 Cco-Chr2:11258484 Cco04g1995 Cco-Chr4:34122675 1.60E-264 dispersed
Cco04g1995 Cco-Chr4:34122675 Cco06g0006 Cco-Chr6:87865 3.40E-190 dispersed
Cco02g0186 Cco-Chr2:1784621 Cco04g1995 Cco-Chr4:34122675 4.50E-259 wgd
Cco03g0485 Cco-Chr3:5088180 Cco04g1995 Cco-Chr4:34122675 8.60E-255 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59132 PF01852 START 1.90E-46 CL0209 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1995 K09338 - csv:101209093 1361.67