Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1997 ATGGCTACACATCAGCCACTTCTTCTTCAACCCCCCAAAACTCCCCGATCCAAAACCTTCCCAACAATCCTCTGTTTGGCTGCTCTTTTGTGCTCAGCCATTTTCATTACCAACAAATTCATCAAATCAAACCCATCTGAAGATGATCTACCCTTCCTTCACAACATATGCCACAAGGCATACAACCCATCATCCTGCATTCAAATGGCCGCCTCAGAATCTCCCTTTCCTCAAGAAATCAAAACCACGAACGGGGCTCATTTCTTACATTCTTTCTTGAGGAAATCCATTCCCAAAGTAATTAACACAATCGAGAAAGCCAAAGATCTCAGCCAAAGAATCAACAACCCTCGCGGTGAAGCAGCTTTAGCCGATTGTGTCGAGCTTATGGAGATCTCAAACGGCCGACTCATGGACTCTGTTTTGGCTCTGAAGAACAGAACAAGCGGTTCTATCGAAAATGCCCACACATGGCTGAGTAGCGTGCTGACAAACCACATCACGTGCTGGGATGAGATCGAGAATTCAGTATCCAGAGCCGCGGCCATGGATTTAGGACTTGAAGAGTTGATTATGAGAGGGAGAAATTCGTTGGGGATGTTTGTTTCTATTTGGGGATCGGAAATTGGAAATCTGGGGGAGTTGGGGAAAAGGGAAAATGCGTATCCGAGTTGGTTGAAGAAAGGAGATCGGACATTGTTGGGGGTTTCGGGGAGAGAAATGCAAGCGAATATCGTGGTGGCAAAGGATGGGAGTGGGAATTTCAAGACGGTGAAGGAGGCGGTTGAAGCAGTTCCAGATAAGAGCAAGAATAGAGTTGTTATATATGTGAAGAAGGGGATATATAAGGAAAATGTGGAAGTGGGAAAGAAGAAAAAGAATGTAATGATCGTTGGAGATGGAATGGATTCCACCATTATCACCGGTAGCCTCAACGTCGTTGATGGATCAACAACTTTCAACTCTGCAACTGTAGCTGCGGTGGGAGATGGATTTATAGCCCAAGACATTTGGTTCCAAAACACAGCCGGACCGGAAAAGCACCAAGCAGTCGCACTTCGGGTCGGAGCAGATCAATCCGTCATAAACCGGTGTCGTATCGACGCTTATCAAGACACTCTCTACGCACATTCCAACCGTCAATTCTACCGAGATTCCACCATCACCGGCACCGTCGACTTCATATTCGGTAACGCCGCCGTCGTGTTACAGAACTGTAAAGTTGAGCCCCGACGGCCGATGAGCAACCAAGTCAACATGGTGACGGCGCAAGGCCGAATCGACCCAAATCAGAACACTGGAACTTCGATCCAGAAATGCCAAATCGTGGCAAGCTCCGACTTGGAGCCCGTTAAGGGGTCGATTAAGACGTATTTGGGGCGCCCATGGAAGGAGTTTTCGAGGACCGTCGTGATGCAGTCCAGAATTGGCGATCTTATTAATCCAGCGGGCTGGGCCGAGTGGAGTGGGGACTTTGCATTGAAGACGCTCTATTACGGGGAGTATTTAAATAATGGGCCGGGCTCTGATGTTAGCAAGCGAGTGAAGTGGGCCGGTTACCATGTCATTACGAGCCCATCTGAGGCCCAAAAATTCACGGTGGATTCACTTATACAAGGAGGCCAATGGCTGGGCCCCTCAGGCGCGACTTTTATCCCAGGGCTGTGA 1668 48.44 MATHQPLLLQPPKTPRSKTFPTILCLAALLCSAIFITNKFIKSNPSEDDLPFLHNICHKAYNPSSCIQMAASESPFPQEIKTTNGAHFLHSFLRKSIPKVINTIEKAKDLSQRINNPRGEAALADCVELMEISNGRLMDSVLALKNRTSGSIENAHTWLSSVLTNHITCWDEIENSVSRAAAMDLGLEELIMRGRNSLGMFVSIWGSEIGNLGELGKRENAYPSWLKKGDRTLLGVSGREMQANIVVAKDGSGNFKTVKEAVEAVPDKSKNRVVIYVKKGIYKENVEVGKKKKNVMIVGDGMDSTIITGSLNVVDGSTTFNSATVAAVGDGFIAQDIWFQNTAGPEKHQAVALRVGADQSVINRCRIDAYQDTLYAHSNRQFYRDSTITGTVDFIFGNAAVVLQNCKVEPRRPMSNQVNMVTAQGRIDPNQNTGTSIQKCQIVASSDLEPVKGSIKTYLGRPWKEFSRTVVMQSRIGDLINPAGWAEWSGDFALKTLYYGEYLNNGPGSDVSKRVKWAGYHVITSPSEAQKFTVDSLIQGGQWLGPSGATFIPGL 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34147738 34149493 - CcPI632755_04g019970.1 Cco04g1997 177222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1997 555 ProSitePatterns Pectinesterase signature 1. 269 288 IPR018040 -
Cco04g1997 555 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 52 176 IPR035513 -
Cco04g1997 555 SUPERFAMILY Pectin lyase-like 241 554 IPR011050 -
Cco04g1997 555 CDD PMEI-like_4 57 204 - -
Cco04g1997 555 ProSitePatterns Pectinesterase signature 2. 388 397 IPR033131 -
Cco04g1997 555 PANTHER PECTINESTERASE 26 545 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cco04g1997 555 Pfam Pectinesterase 244 540 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cco04g1997 555 Pfam Plant invertase/pectin methylesterase inhibitor 52 176 IPR006501 GO:0004857(InterPro)
Cco04g1997 555 SMART PMEI_2 48 200 IPR006501 GO:0004857(InterPro)
Cco04g1997 555 Gene3D - 238 555 IPR012334 -
Cco04g1997 555 Gene3D Invertase/pectin methylesterase inhibitor family protein 51 203 IPR035513 -
Cco04g1997 555 FunFam Pectinesterase 238 555 - -
Cco04g1997 555 NCBIfam pectinesterase inhibitor domain 25 173 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1997 Cco-Chr4:34147738 Cco09g0540 Cco-Chr9:4731061 1.00E-119 dispersed
Cco04g1997 Cco-Chr4:34147738 Cco09g0143 Cco-Chr9:1255122 2.80E-125 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1997 K01051 - csv:101216377 973.0