Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g2006 ATGGGAACTCCAGAAAGCCTTCTCTTCCTTTGCTTCATCGTCTTATTCATGGTTTCAACCACCGTTTCTCAAATAGAAATCAAAAACCACTTATGTTCAAACAGCGGCAACTACACCAGCAACAGCATTTACAAGCAAAATCTCGACACCCTCCTTTCCACCATCGCCTCCAACGCCGAAATTGATTACGGGTTTTACAATTTCTCAGCCGGACAGCAACTCGACAAGGTTAACGCCATCGCCCTTTGCCTGGCCGATCTGACGGTGGAGAAATGCAGGAGCTGTCTCCAAAATTCGACTCGAAGGATTCTAGAGGATTGTCCCAACCAGAAGGAGGCTATCGGATGGTACACCGATTGCATGATTCGTTACTCAAATAGATCAATATTTGGCGTTGGGAACGATCAAGTGCTTAGGCCAACTTTTGTTTCCGGTCGGACTGCATCAGACGTAGTTGGGTACACTCAATCGCTAAGCAGTTTGTTGCAAAGACTGAGAAATCAGGCTGCATCTGGGGATTCTAAACACAAATTCGCAGTGGGTGAAATGCCAGCCCCTAATTTGGATACCATATTTGGGTTTCTTCAATGTACTCCCGATTTGTCCTCTGTGGATTGCAATAATTGTCTCATGAAGGCCGCTGAAAATGTTCCAAATGGAAGTACAGGAACGAGGATATTTTCGACCAGCTGCTTTTTGAGATTTGAGACGAACGATCTTTTCTACAACACTCTGTCGCCGCCTCCCACTGCTGGTGAAGCTCCTTCACCACCCATGTCGCCGCCGCCGCCTCTGCCTCCAACGCCAGAAAATACGGCTAGAACTGTTATTATCGTTGTGGTGTCTATCGTTTCAGTCATCATTGTTCTCCTTGTTGCCATTTTTATCATTTTGAGGTTGAGGAAGCGAAATAACAGAAAATCAACTGACAAATTTGAAGGTGTTATTGGGGACACCACTGACGAAATTAGCAGTGTGGAGACCATTCAATTTGATTTTGAAACCATTAAAATTGCAACAAGCGATTTCTCAAGTGAAAACAAGTTGGGACAAGGTGGATTTGGAGCTGTTTACAAGGGTAAACTAGCTAACGGAGAACGTATAGCAGTGAAGAGACTTGCAAATAATTCACAACAAGGAGATTTTGAATTCAAAAATGAAGTCCTTTTGGTGGTCAAACTTCAACATCGAAACTTGGTTAGGCTGTTGGGATTTTGCTTGCAAAGAACTGAAAGACTTCTCATATATGAGTTCGTACCAAATGCCAGCCTTGACCGATTCATATTTGATTTTGGAAAAAGGACACAATTAGATTGGGAAAGACGATTCAAAATCATAAACGGTATTGCACGAGGACTTCTTTACCTTCATGAAGATTCTCGCCTTCGAATCATACATCGTGATCTCAAAGCTAGTAATATTTTGTTGGATGAGGAAATGAATCCGAAGATTGCAGATTTTGGTATGGCAAGATTGTTTGAAGTAGATGAGACTCAAGGCAATACAAGTAGAATTGTGGGAACTTATGGCTATATGGCTCCAGAATATTTAATGCATGGCCAATTTTCAGTTAAATCAGATGTCTTTAGCTTTGGTGTTTTAATTCTTGAAATTTTGAGTGGTAAGAAAAATAGGTGCTTTCGCAATGAAGAAAAGATAGAAGATCTCTCCAGCTTTGCATGGAAAAATTGGAAGGCTGGAACAACTAATAATGTCATAGATTCAACACTTAGCGTTGGTTCTAGTGTTGAAATGTTAAGATGCATTCACCTCGGATTATTGTGTGTTCAAGAGAATGCAGCAGATCGTCCAGCGATGGCTACGGTGGTTCTAATGCTTAGTAGCATCTCTCTTACTCTTCCAGTACCTTTGGAACCAGCATTCTTCATGCACACTAACATCGATGAATCCAACACACATTCAAATAGAAATCAGTGGTTGGAAATGAATGAGACGGCTACTCATTCTGAAAACATACCTCTTCAATCTTTATCCAACGAAGCTTCAATTAGTGAGCTCAACCCCCGCTAG 2031 41.75 MGTPESLLFLCFIVLFMVSTTVSQIEIKNHLCSNSGNYTSNSIYKQNLDTLLSTIASNAEIDYGFYNFSAGQQLDKVNAIALCLADLTVEKCRSCLQNSTRRILEDCPNQKEAIGWYTDCMIRYSNRSIFGVGNDQVLRPTFVSGRTASDVVGYTQSLSSLLQRLRNQAASGDSKHKFAVGEMPAPNLDTIFGFLQCTPDLSSVDCNNCLMKAAENVPNGSTGTRIFSTSCFLRFETNDLFYNTLSPPPTAGEAPSPPMSPPPPLPPTPENTARTVIIVVVSIVSVIIVLLVAIFIILRLRKRNNRKSTDKFEGVIGDTTDEISSVETIQFDFETIKIATSDFSSENKLGQGGFGAVYKGKLANGERIAVKRLANNSQQGDFEFKNEVLLVVKLQHRNLVRLLGFCLQRTERLLIYEFVPNASLDRFIFDFGKRTQLDWERRFKIINGIARGLLYLHEDSRLRIIHRDLKASNILLDEEMNPKIADFGMARLFEVDETQGNTSRIVGTYGYMAPEYLMHGQFSVKSDVFSFGVLILEILSGKKNRCFRNEEKIEDLSSFAWKNWKAGTTNNVIDSTLSVGSSVEMLRCIHLGLLCVQENAADRPAMATVVLMLSSISLTLPVPLEPAFFMHTNIDESNTHSNRNQWLEMNETATHSENIPLQSLSNEASISELNPR 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34204500 34207185 + CcPI632755_04g020060.1 Cco04g2006 177231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g2006 676 ProSiteProfiles Gnk2-homologous domain profile. 136 240 IPR002902 -
Cco04g2006 676 ProSiteProfiles Gnk2-homologous domain profile. 26 129 IPR002902 -
Cco04g2006 676 MobiDBLite consensus disorder prediction 246 268 - -
Cco04g2006 676 ProSitePatterns Protein kinases ATP-binding region signature. 349 371 IPR017441 GO:0005524(InterPro)
Cco04g2006 676 Pfam Protein tyrosine and serine/threonine kinase 346 610 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g2006 676 ProSiteProfiles Protein kinase domain profile. 343 628 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g2006 676 SUPERFAMILY Protein kinase-like (PK-like) 331 651 IPR011009 -
Cco04g2006 676 Gene3D - 24 128 IPR038408 -
Cco04g2006 676 Gene3D - 138 239 IPR038408 -
Cco04g2006 676 MobiDBLite consensus disorder prediction 657 676 - -
Cco04g2006 676 Pfam Salt stress response/antifungal 152 237 IPR002902 -
Cco04g2006 676 Pfam Salt stress response/antifungal 32 127 IPR002902 -
Cco04g2006 676 FunFam Cysteine-rich receptor-like protein kinase 10 302 418 - -
Cco04g2006 676 Gene3D Phosphorylase Kinase; domain 1 318 418 - -
Cco04g2006 676 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 141 629 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cco04g2006 676 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g2006 676 CDD STKc_IRAK 349 616 - -
Cco04g2006 676 SMART serkin_6 343 617 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g2006 676 MobiDBLite consensus disorder prediction 250 268 - -
Cco04g2006 676 Gene3D Transferase(Phosphotransferase) domain 1 419 620 - -
Cco04g2006 676 FunFam Cysteine-rich receptor-like protein kinase 28 419 621 - -
Cco04g2006 676 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 25 129 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0498 Cco-Chr3:5187253 Cco04g2006 Cco-Chr4:34204500 1.10E-144 dispersed
Cco03g0503 Cco-Chr3:5209213 Cco04g2006 Cco-Chr4:34204500 5.10E-158 dispersed
Cco03g0507 Cco-Chr3:5238809 Cco04g2006 Cco-Chr4:34204500 3.70E-164 dispersed
Cco04g1803 Cco-Chr4:32919644 Cco04g2006 Cco-Chr4:34204500 3.60E-96 dispersed
Cco04g2006 Cco-Chr4:34204500 Cco04g2009 Cco-Chr4:34225039 3.40E-205 dispersed
Cco04g2008 Cco-Chr4:34219494 Cco04g2006 Cco-Chr4:34204500 1.80E-60 dispersed
Cco04g2005 Cco-Chr4:34196418 Cco04g2006 Cco-Chr4:34204500 2.40E-251 tandem
Cco04g2006 Cco-Chr4:34204500 Cco04g2007 Cco-Chr4:34208342 2.40E-110 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86781 PF00069 Pkinase 1.90E-47 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g2006 - - - 0.0