Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g2010 ATGAGTTCCCAAACGCCTTTCTTCCTGCCTTTCTTCATTCTCGCAGTCCCACACTTAATATTTCCCACAACTTCTCAGCCACCCTTTTTATACTACACCTGCTCTTCCAATGCCAATTACACCATATACAGCCCTTTCAACATAAACCTGGACAACGTACTTCGCTCCATTTCTTCCAACACCCAAGTCGATTACGGCTTCTACAACGCCACTTCCGGCCAAGATCCCGACCGAGCCACCGCTTTGGCTCTTTGCCGTGGTGGTGTTTCATTGGAACAATGTAGAAGCTGTGTGAACAACTCAGCGCTCAGGATTACTCAAGATTGTCCAAACCAGAAAGAGGCAGAGGGATGGTACCAGGATTGTCAAATTCGTTACTCAAACAACTCTATTTACGGCGTTCTCGGAGACAGCACTACGCAGATATTCTTGTGGAACACTCAAATAGCGGAAGACCCAGATGGGTTCAATGAGGCATTGAGGAGTTTGTTGGATCGGCTGCGAATTGAGGCTGCGTCGGGGAGTTCTATTCGAAAGTCTGCTTGGGGAGAAAAGAAGGTTCGGAGTCCAAGCATGGATACCATATATGGATTGGTTGATTGTTTTCCTGATTTGTCTTACTTGGATTGTTTTAACTGCCTCTATCTGCTTCAAAATTCTCTTCCTAGTTGTTGCAACGCCAGCATAGGAGCCAGATTACTTGCAGTTAGTTGCGAACTCAATTATGAGATCCACCCCATCTATGCCTCACTTTTGTCTCCACCGCCGCCTCCTCCACCCACTCTGTCTTCTCCTTCGCCTCCGGCTCCGGCATCACCCCTGCCGTCTTTGCCTCCGAAACCTGGAAATAGTGGCAGTACTGATAGAAGTATAAGTAGAAGTGGAAGTGTTGTAATCGTTATGGTGGCCATCGTTTCTGCTGTCATTCTTCTTGCCATTTTCATCATTTTGATATTGAGGAAGCGAAAGCACAAAAGACCATTAGGTGTATCTTTTGAAGACACCATCGATGAAATTAGTAGTGTGGAGATGATTCAATTTGATATTGATAGCGTTAAAGTTGCAACAAATAACTTTGCAAGTGAAAACAAGCTCGGACAAGGTGGATTTGGAGCTGTTTATAAGGGTAAGCTACCTAATGGACGACCAATAGCTGTGAAGAGGCTTGCGAATAATTCACAACAAGGGGATGTTGAATTCAAAAATGAAGTCCTTTTGGTGGTCAAGCTTCAACATCGTAACTTGGTTAGGCTACTTGGGTTCTGCTTGCAAAGAAGCGAAAGACTTCTCATATATGAGTTTGTACCAAATGGCAGCCTTGACCACTTTATATTTGATTTTGCAAAGCGGTCACTATTAGATTGGGAGACACGTTTCAAAATCATAAATGGCATTGCGAGAGGACTTCTTTACCTTCATGAAGATTCTCGTCATCGAATCATACATCGTGATCTTAAAGCTAGCAATATTTTGTTGGATACAGAAATGAATTCAAAGATTTCAGATTTTGGTATGGCAAGATTGTTCGAAGTAGATCAAACTCAAGGCAATACAAGTAGAATTGTGGGAACTTATGGCTATATGGCTCCAGAGTATGTAAAGCGTGGACAATTCTCAATAAAATCAGATGTTTTTAGCTTTGGTGTCTTGGTTCTTGAGATTTTGAGTGGTCAAAGAAACAATAATTTTCACAATGGAGAACACTCCAAAAATCTCTTAAGCTTTACTTGGAATAATTGGAGGGCTGGAACAACCACAAATGTCATAGATTCAACACTTGGTGTTGGCTCAAGGATTGAAATGATAAGATGCATTCACATTGGACTATTATGTGTTCAGGAAAGTGTAGCAAACCGACCAACAATGGCTTCGGTGGTTATGATGTTAAGTAGTTCTTCTTTCACTCTCCCTATACCCTCTAAACCTGCATTCTTCATGCATAGCATCACCAATGGATCCAACACAATGTTAGCATCAGATGAGACTAATCATTCTAAAAGCACATCTCTTCAACATTTGGAAAATGTTGACGTTTCAATTACAGAGCTTCACCCTCGTTAA 2061 42.07 MSSQTPFFLPFFILAVPHLIFPTTSQPPFLYYTCSSNANYTIYSPFNINLDNVLRSISSNTQVDYGFYNATSGQDPDRATALALCRGGVSLEQCRSCVNNSALRITQDCPNQKEAEGWYQDCQIRYSNNSIYGVLGDSTTQIFLWNTQIAEDPDGFNEALRSLLDRLRIEAASGSSIRKSAWGEKKVRSPSMDTIYGLVDCFPDLSYLDCFNCLYLLQNSLPSCCNASIGARLLAVSCELNYEIHPIYASLLSPPPPPPPTLSSPSPPAPASPLPSLPPKPGNSGSTDRSISRSGSVVIVMVAIVSAVILLAIFIILILRKRKHKRPLGVSFEDTIDEISSVEMIQFDIDSVKVATNNFASENKLGQGGFGAVYKGKLPNGRPIAVKRLANNSQQGDVEFKNEVLLVVKLQHRNLVRLLGFCLQRSERLLIYEFVPNGSLDHFIFDFAKRSLLDWETRFKIINGIARGLLYLHEDSRHRIIHRDLKASNILLDTEMNSKISDFGMARLFEVDQTQGNTSRIVGTYGYMAPEYVKRGQFSIKSDVFSFGVLVLEILSGQRNNNFHNGEHSKNLLSFTWNNWRAGTTTNVIDSTLGVGSRIEMIRCIHIGLLCVQESVANRPTMASVVMMLSSSSFTLPIPSKPAFFMHSITNGSNTMLASDETNHSKSTSLQHLENVDVSITELHPR 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34230317 34238937 + CcPI632755_04g020100.1 Cco04g2010 177235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g2010 686 Gene3D Phosphorylase Kinase; domain 1 328 434 - -
Cco04g2010 686 Gene3D Transferase(Phosphotransferase) domain 1 435 635 - -
Cco04g2010 686 SUPERFAMILY Protein kinase-like (PK-like) 347 660 IPR011009 -
Cco04g2010 686 ProSiteProfiles Gnk2-homologous domain profile. 138 247 IPR002902 -
Cco04g2010 686 ProSitePatterns Serine/Threonine protein kinases active-site signature. 480 492 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g2010 686 Pfam Salt stress response/antifungal 33 128 IPR002902 -
Cco04g2010 686 Pfam Salt stress response/antifungal 151 243 IPR002902 -
Cco04g2010 686 FunFam Cysteine-rich receptor-like protein kinase 28 435 637 - -
Cco04g2010 686 FunFam Cysteine-rich receptor-like protein kinase 10 320 434 - -
Cco04g2010 686 ProSiteProfiles Protein kinase domain profile. 359 635 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g2010 686 SMART serkin_6 359 634 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g2010 686 ProSitePatterns Protein kinases ATP-binding region signature. 365 387 IPR017441 GO:0005524(InterPro)
Cco04g2010 686 MobiDBLite consensus disorder prediction 256 289 - -
Cco04g2010 686 Gene3D - 138 246 IPR038408 -
Cco04g2010 686 Gene3D - 27 130 IPR038408 -
Cco04g2010 686 CDD STKc_IRAK 365 622 - -
Cco04g2010 686 Pfam Protein tyrosine and serine/threonine kinase 362 577 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g2010 686 ProSiteProfiles Gnk2-homologous domain profile. 28 131 IPR002902 -
Cco04g2010 686 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 94 645 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cco04g2010 686 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 27 131 - -
Cco04g2010 686 MobiDBLite consensus disorder prediction 256 280 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0499 Cco-Chr3:5198418 Cco04g2010 Cco-Chr4:34230317 3.60E-21 dispersed
Cco04g2005 Cco-Chr4:34196418 Cco04g2010 Cco-Chr4:34230317 9.10E-182 dispersed
Cco04g2010 Cco-Chr4:34230317 Cco04g2015 Cco-Chr4:34259223 6.50E-156 dispersed
Cco04g2009 Cco-Chr4:34225039 Cco04g2010 Cco-Chr4:34230317 3.40E-282 tandem
Cco04g2010 Cco-Chr4:34230317 Cco04g2011 Cco-Chr4:34241367 6.10E-154 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86785 PF07714 PK_Tyr_Ser-Thr 6.60E-48 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g2010 - - - 0.0