Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g2011 ATGGAGATTGGCAGTTCGAGTTTGAGGCCAAGGCTTTTGTTCCTCTACTCTGTTATTTCACAATTGATGTTTATTATAACCACAACATCTCAGCCTGACTTCTTTTATTACCTCTGTCCAGACAAAGGCAACTACACCGACAACAGCCCTTTCAACAAAAATCTCGACAACGTTCTTGCTTCAATCTCCTCCAATTCCAACACCGACAGCCGCCGGGTCGACTACGGTTTCTATAATGCCACCGCCGGTGAAGATCCCGACACAGCCAACGCTAAGGTTCTTTGTCGTAAGGGCGTTCCGTTGGAACAATGCAGAAGTTGTGTGAATGACTCAGTCCGCAGAATTACACAAAACTGCCCAACCCAGAAGGAAGGTGCAGGATGGTACCACCATTGCCAGATTCTTTACTCAAACAACCCTGTTCACGATGAGACAGATTTTCCCGTGAATCAAGTTTATTCCAACACCGGTGCAGCCCCAGACGCGAACGGTTTCAATGAGGAACGGAGAGAGTTACTGGATCGACTGCGAGAGGAGGCTGCATCAGGGACTTCGATTCGGAAGTCTGCAGGCGGAGATGTGAAGCTTAAAAGTCCGAATACGTATACAATATATGGGCTTGTTGATTGTTTTCCCGACATGTCGTACTTCGATTGTGATGTCTGCCTCAGTCGGCTTCAAAGAAATAATGGCAATTCTGCTAGAACTGTTGTAATTGTTGTGGTGTCCATCTTTTCAGCCATCATTCTCATTGTTGGTATTTGCATGATTCTGAGATGGAGGAACAGAAAGCAGAAAAGACCATTAAGAAAATTTGAAAGTGTTGCTCTTGGAGATGCCAGTGATGACATTAGCAGTGTGAAGACAATTCAATTTGATTTTGATGTCATTAAAGATGCAACTAATGACTTCTCAAGTGAAAACAAGCTAGGACAGGGTGGGTCTGGAGTTGTTTACCGGGGTAAGCTACCTAATGGACAACATGTTGGAGTGAAGAGGCTTGCACATAATTCACAACAAGGAGATATTGAATTCAAAAATGAAGTACTTTTGGTAGTAAAGCTTCAACATCGAAACTTGGTTAGGCTATTGGGATTCTGCTTGAAAGGAAGCGAAAGACTTCTCATATATGAGTTTGTACCAAATGGCAGCCTTGACCACTTCATATTTGATTTTGGGGAGCGGACACAATTAGGTTGGGAAACACGATACAAAATCATAAATGGCATTGCACGAGGACTTCTTTATCTTCATGAAGATTCTCGCCTTCGAATCATACATCGTGATCTCAAAGCTAGCAATATTTTGTTGGGTGAAGAAATGAATCAAAAAATTGCTGACTTTGGTATGGCAAGATTGTTCGAAGTAGATGAGACTCAAGGCAATACAAATAGAACTGTGGGAACTTATTCTGCTCTCACTCTTCCTATACCATCTGAACCTGCATTCTTTATGCACAACACCAATGAATCCAACACAATGTTAAAGTCAGACGGGGCCAGTCATTCTATAACCAAATCTCTTCGAGCTTCGAAAAATGACGTTTCAATTACATAG 1557 42.45 MEIGSSSLRPRLLFLYSVISQLMFIITTTSQPDFFYYLCPDKGNYTDNSPFNKNLDNVLASISSNSNTDSRRVDYGFYNATAGEDPDTANAKVLCRKGVPLEQCRSCVNDSVRRITQNCPTQKEGAGWYHHCQILYSNNPVHDETDFPVNQVYSNTGAAPDANGFNEERRELLDRLREEAASGTSIRKSAGGDVKLKSPNTYTIYGLVDCFPDMSYFDCDVCLSRLQRNNGNSARTVVIVVVSIFSAIILIVGICMILRWRNRKQKRPLRKFESVALGDASDDISSVKTIQFDFDVIKDATNDFSSENKLGQGGSGVVYRGKLPNGQHVGVKRLAHNSQQGDIEFKNEVLLVVKLQHRNLVRLLGFCLKGSERLLIYEFVPNGSLDHFIFDFGERTQLGWETRYKIINGIARGLLYLHEDSRLRIIHRDLKASNILLGEEMNQKIADFGMARLFEVDETQGNTNRTVGTYSALTLPIPSEPAFFMHNTNESNTMLKSDGASHSITKSLRASKNDVSIT 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34241367 34244132 - CcPI632755_04g020110.1 Cco04g2011 177236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g2011 518 Gene3D Phosphorylase Kinase; domain 1 271 379 - -
Cco04g2011 518 Gene3D - 31 140 IPR038408 -
Cco04g2011 518 Gene3D - 148 240 IPR038408 -
Cco04g2011 518 Gene3D Transferase(Phosphotransferase) domain 1 380 475 - -
Cco04g2011 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g2011 518 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 99 470 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cco04g2011 518 MobiDBLite consensus disorder prediction 494 518 - -
Cco04g2011 518 FunFam Cysteine-rich receptor-like protein kinase 10 265 379 - -
Cco04g2011 518 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 380 471 - -
Cco04g2011 518 ProSiteProfiles Gnk2-homologous domain profile. 147 265 IPR002902 -
Cco04g2011 518 SMART serkin_6 304 517 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g2011 518 Pfam Protein tyrosine and serine/threonine kinase 307 462 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g2011 518 ProSiteProfiles Gnk2-homologous domain profile. 33 141 IPR002902 -
Cco04g2011 518 SUPERFAMILY Protein kinase-like (PK-like) 282 470 IPR011009 -
Cco04g2011 518 Pfam Salt stress response/antifungal 39 138 IPR002902 -
Cco04g2011 518 ProSiteProfiles Protein kinase domain profile. 304 518 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g2009 Cco-Chr4:34225039 Cco04g2011 Cco-Chr4:34241367 3.10E-158 dispersed
Cco04g2011 Cco-Chr4:34241367 Cco04g2016 Cco-Chr4:34266056 3.50E-101 dispersed
Cco04g2010 Cco-Chr4:34230317 Cco04g2011 Cco-Chr4:34241367 6.10E-154 tandem
Cco04g2011 Cco-Chr4:34241367 Cco04g2012 Cco-Chr4:34246295 6.20E-74 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86786 PF00069 Pkinase 2.50E-31 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g2011 - - - 0.0