Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g2012 ATGTTCTGTTTCCTCGATTACAGATCTTTGCAAATTTCGTTGCTACTTCTAATTTCAATCCTTGGGCTCAGCCGCTCCCATCATTTCGAACCAAAATATAGGTTCCACATCTGTTCAGCGCCAAGTGATAACACAACCAATTCTAATCAGGGTTCGGACCTCAATGGCCTGCTGAGTTCCCTATCAGAAGCTTCGTCTGACAGCTTCTACAACAGAACTTTCAATGGAATATACGGCCTCGTCCTTTGCCGAGGCGATATTAACAGCGATAACTGTCACAGTTGTGTCAGTGCTGCAAGCAAAGAATTAAGGGATCAATGCCCTTTAAGAGTTAACGCCACAATATGGTACGATGAGTGTATGCTGAGATACTCAGACAAGAACTTCTTGGGGACTGTAGAGATATTGCCGAGATTCCTTATGGGCGATTCTGGGAACCAGACATCACCAGATGATCGGAACATTGACGGTCCTGATCTATTGTCTCAGATGGCCAGTGAAGCTGCAGAGCTAGAGATGATGTTCAAGGCAAACAAGTTGGATAACCGTGGGACACGCTATGGATTGGTTCAGTGCACAAGGGATCTCAACAGTAGCGAGTGTTTTACATGTTTGACGGCTCTGCTGGAGGAGATCAAGCAGGTTTACAAAGGGAGAGTGGGGTGGAGAATTTTGGGCCCAAGTTGTAGCGTAACGTATGAGCAATATATTTTCTATCAGCTACCAGCTTCGTGTCAAGGATTAAGCGCGAAAATGATTGTAGCAATCACTATATCAACAGTTGCAGCACTAGCAATTCTTGCAAGTCTATCGTATTGTTTACTTTTGTCAAATAAGAGACGACAGGAGATGGACACAGGCGAACAAGTTCTGTTGCGAAATTTGGGACATACGAAGTCCGCAGAATTGATGAAGCAAGATTTGCATTCACGAGACAGAGACAATGATGAAGAAATGCATTACTTCAGTTTCACCACTCTACAGGCTGCCACAAACAACTTTGCAGATACAAATAGACTTGGAGAAGGCGGTTTTGGTCCGGTTTTCAAGGGAAAGTTGATGAATGGGGAAGAAATAGCTGTAAAAAGACTGTCGGTTAAGTCGAGTCAAGGTCACGATGAGTTCAAGAATGAAGTCATGGTCATAATGAAGCTTCAACATAAAAATCTAGTCAGACTTCTGGGATGCTGTCTGGAGGGAGAGGAAAAGCTCCTTGTCTATGAGTACATGGCAAACACTAGTCTAGATGCCTTCCTATTTGATCCAGTTAAATGCAAACAACTCGACTGGCTTAAGCGCAACAACATCATCAATGGAGTTGCAAAAGGAATTCTATATCTACACGAAGACTCTCGGCTCAAAATTATTCATAGGGATTTGAAAGCTAGCAATGTTTTGTTGGATGATGAGATGAATGCAAAGATATCAGACTTTGGAACGGCCAGAATATTTGGAGGCAAACAAGTTGAGGCTAGCACCAACAGAGTTGTTGGCACTTTTGGATATATGGCACCAGAATATGCAATGGAGGGAGTGTTTTCAATAAAGTCTGATGTTTACAGTTTTGGGATTTTAATGTTAGAAGTGATAAGCGGAAGAAAGAACAGCGGTTTCTTCAAAGTAGACAATGCACAGAGCCTTCTATCACAGGCATGGCAACTATGGAAGGAAGGGAGAGAAGAGGAAATGGTTGATCCGAACCTGGTTGGAGAATGTTCTTTGAGCGAAGCTCTGAGATGGATCCAAATTGGTCTGCTGTGTGTACAAGAAGACCCTAACATCAGACCCACCATGTCAATGGTTGTTCTAATGCTTGGAAGCAAATCGATTCACCTTCCCCAACCGTCGAAACCTCCATTCTTTCCAATTGGATTTCCGATGTCCGCCGATCAATCTTCAATGACTTTACTGGGAACGGGATATCTCTCCACTCAATCGTCTACCACTGCTTCTATCTAG 1959 43.29 MFCFLDYRSLQISLLLLISILGLSRSHHFEPKYRFHICSAPSDNTTNSNQGSDLNGLLSSLSEASSDSFYNRTFNGIYGLVLCRGDINSDNCHSCVSAASKELRDQCPLRVNATIWYDECMLRYSDKNFLGTVEILPRFLMGDSGNQTSPDDRNIDGPDLLSQMASEAAELEMMFKANKLDNRGTRYGLVQCTRDLNSSECFTCLTALLEEIKQVYKGRVGWRILGPSCSVTYEQYIFYQLPASCQGLSAKMIVAITISTVAALAILASLSYCLLLSNKRRQEMDTGEQVLLRNLGHTKSAELMKQDLHSRDRDNDEEMHYFSFTTLQAATNNFADTNRLGEGGFGPVFKGKLMNGEEIAVKRLSVKSSQGHDEFKNEVMVIMKLQHKNLVRLLGCCLEGEEKLLVYEYMANTSLDAFLFDPVKCKQLDWLKRNNIINGVAKGILYLHEDSRLKIIHRDLKASNVLLDDEMNAKISDFGTARIFGGKQVEASTNRVVGTFGYMAPEYAMEGVFSIKSDVYSFGILMLEVISGRKNSGFFKVDNAQSLLSQAWQLWKEGREEEMVDPNLVGECSLSEALRWIQIGLLCVQEDPNIRPTMSMVVLMLGSKSIHLPQPSKPPFFPIGFPMSADQSSMTLLGTGYLSTQSSTTASI 652
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 34246295 34249306 - CcPI632755_04g020120.1 Cco04g2012 177237
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco04g2012 652 CDD STKc_IRAK 340 605 - -
Cco04g2012 652 ProSiteProfiles Gnk2-homologous domain profile. 32 129 IPR002902 -
Cco04g2012 652 Gene3D Transferase(Phosphotransferase) domain 1 410 612 - -
Cco04g2012 652 Gene3D Phosphorylase Kinase; domain 1 308 409 - -
Cco04g2012 652 ProSiteProfiles Gnk2-homologous domain profile. 135 238 IPR002902 -
Cco04g2012 652 SUPERFAMILY Protein kinase-like (PK-like) 316 632 IPR011009 -
Cco04g2012 652 ProSiteProfiles Protein kinase domain profile. 334 621 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g2012 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g2012 652 SMART serkin_6 334 603 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g2012 652 Gene3D - 31 129 IPR038408 -
Cco04g2012 652 Gene3D - 140 238 IPR038408 -
Cco04g2012 652 FunFam Uncharacterized protein 410 611 - -
Cco04g2012 652 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 298 409 - -
Cco04g2012 652 Pfam Salt stress response/antifungal 159 236 IPR002902 -
Cco04g2012 652 Pfam Salt stress response/antifungal 38 126 IPR002902 -
Cco04g2012 652 Pfam Protein tyrosine and serine/threonine kinase 338 602 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g2012 652 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 154 621 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g2012 Cco-Chr4:34246295 Cco04g2015 Cco-Chr4:34259223 6.30E-116 dispersed
Cco04g2011 Cco-Chr4:34241367 Cco04g2012 Cco-Chr4:34246295 6.20E-74 tandem
Cco04g2012 Cco-Chr4:34246295 Cco04g2013 Cco-Chr4:34252510 5.80E-146 tandem
Cco02g0171 Cco-Chr2:1678000 Cco04g2012 Cco-Chr4:34246295 3.10E-21 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86787 PF07714 PK_Tyr_Ser-Thr 1.40E-47 CL0016 Cco PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g2012 - - - 0.0