Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g2012 | ATGTTCTGTTTCCTCGATTACAGATCTTTGCAAATTTCGTTGCTACTTCTAATTTCAATCCTTGGGCTCAGCCGCTCCCATCATTTCGAACCAAAATATAGGTTCCACATCTGTTCAGCGCCAAGTGATAACACAACCAATTCTAATCAGGGTTCGGACCTCAATGGCCTGCTGAGTTCCCTATCAGAAGCTTCGTCTGACAGCTTCTACAACAGAACTTTCAATGGAATATACGGCCTCGTCCTTTGCCGAGGCGATATTAACAGCGATAACTGTCACAGTTGTGTCAGTGCTGCAAGCAAAGAATTAAGGGATCAATGCCCTTTAAGAGTTAACGCCACAATATGGTACGATGAGTGTATGCTGAGATACTCAGACAAGAACTTCTTGGGGACTGTAGAGATATTGCCGAGATTCCTTATGGGCGATTCTGGGAACCAGACATCACCAGATGATCGGAACATTGACGGTCCTGATCTATTGTCTCAGATGGCCAGTGAAGCTGCAGAGCTAGAGATGATGTTCAAGGCAAACAAGTTGGATAACCGTGGGACACGCTATGGATTGGTTCAGTGCACAAGGGATCTCAACAGTAGCGAGTGTTTTACATGTTTGACGGCTCTGCTGGAGGAGATCAAGCAGGTTTACAAAGGGAGAGTGGGGTGGAGAATTTTGGGCCCAAGTTGTAGCGTAACGTATGAGCAATATATTTTCTATCAGCTACCAGCTTCGTGTCAAGGATTAAGCGCGAAAATGATTGTAGCAATCACTATATCAACAGTTGCAGCACTAGCAATTCTTGCAAGTCTATCGTATTGTTTACTTTTGTCAAATAAGAGACGACAGGAGATGGACACAGGCGAACAAGTTCTGTTGCGAAATTTGGGACATACGAAGTCCGCAGAATTGATGAAGCAAGATTTGCATTCACGAGACAGAGACAATGATGAAGAAATGCATTACTTCAGTTTCACCACTCTACAGGCTGCCACAAACAACTTTGCAGATACAAATAGACTTGGAGAAGGCGGTTTTGGTCCGGTTTTCAAGGGAAAGTTGATGAATGGGGAAGAAATAGCTGTAAAAAGACTGTCGGTTAAGTCGAGTCAAGGTCACGATGAGTTCAAGAATGAAGTCATGGTCATAATGAAGCTTCAACATAAAAATCTAGTCAGACTTCTGGGATGCTGTCTGGAGGGAGAGGAAAAGCTCCTTGTCTATGAGTACATGGCAAACACTAGTCTAGATGCCTTCCTATTTGATCCAGTTAAATGCAAACAACTCGACTGGCTTAAGCGCAACAACATCATCAATGGAGTTGCAAAAGGAATTCTATATCTACACGAAGACTCTCGGCTCAAAATTATTCATAGGGATTTGAAAGCTAGCAATGTTTTGTTGGATGATGAGATGAATGCAAAGATATCAGACTTTGGAACGGCCAGAATATTTGGAGGCAAACAAGTTGAGGCTAGCACCAACAGAGTTGTTGGCACTTTTGGATATATGGCACCAGAATATGCAATGGAGGGAGTGTTTTCAATAAAGTCTGATGTTTACAGTTTTGGGATTTTAATGTTAGAAGTGATAAGCGGAAGAAAGAACAGCGGTTTCTTCAAAGTAGACAATGCACAGAGCCTTCTATCACAGGCATGGCAACTATGGAAGGAAGGGAGAGAAGAGGAAATGGTTGATCCGAACCTGGTTGGAGAATGTTCTTTGAGCGAAGCTCTGAGATGGATCCAAATTGGTCTGCTGTGTGTACAAGAAGACCCTAACATCAGACCCACCATGTCAATGGTTGTTCTAATGCTTGGAAGCAAATCGATTCACCTTCCCCAACCGTCGAAACCTCCATTCTTTCCAATTGGATTTCCGATGTCCGCCGATCAATCTTCAATGACTTTACTGGGAACGGGATATCTCTCCACTCAATCGTCTACCACTGCTTCTATCTAG | 1959 | 43.29 | MFCFLDYRSLQISLLLLISILGLSRSHHFEPKYRFHICSAPSDNTTNSNQGSDLNGLLSSLSEASSDSFYNRTFNGIYGLVLCRGDINSDNCHSCVSAASKELRDQCPLRVNATIWYDECMLRYSDKNFLGTVEILPRFLMGDSGNQTSPDDRNIDGPDLLSQMASEAAELEMMFKANKLDNRGTRYGLVQCTRDLNSSECFTCLTALLEEIKQVYKGRVGWRILGPSCSVTYEQYIFYQLPASCQGLSAKMIVAITISTVAALAILASLSYCLLLSNKRRQEMDTGEQVLLRNLGHTKSAELMKQDLHSRDRDNDEEMHYFSFTTLQAATNNFADTNRLGEGGFGPVFKGKLMNGEEIAVKRLSVKSSQGHDEFKNEVMVIMKLQHKNLVRLLGCCLEGEEKLLVYEYMANTSLDAFLFDPVKCKQLDWLKRNNIINGVAKGILYLHEDSRLKIIHRDLKASNVLLDDEMNAKISDFGTARIFGGKQVEASTNRVVGTFGYMAPEYAMEGVFSIKSDVYSFGILMLEVISGRKNSGFFKVDNAQSLLSQAWQLWKEGREEEMVDPNLVGECSLSEALRWIQIGLLCVQEDPNIRPTMSMVVLMLGSKSIHLPQPSKPPFFPIGFPMSADQSSMTLLGTGYLSTQSSTTASI | 652 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 34246295 | 34249306 | - | CcPI632755_04g020120.1 | Cco04g2012 | 177237 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g2012 | 652 | CDD | STKc_IRAK | 340 | 605 | - | - | |
Cco04g2012 | 652 | ProSiteProfiles | Gnk2-homologous domain profile. | 32 | 129 | IPR002902 | - | |
Cco04g2012 | 652 | Gene3D | Transferase(Phosphotransferase) domain 1 | 410 | 612 | - | - | |
Cco04g2012 | 652 | Gene3D | Phosphorylase Kinase; domain 1 | 308 | 409 | - | - | |
Cco04g2012 | 652 | ProSiteProfiles | Gnk2-homologous domain profile. | 135 | 238 | IPR002902 | - | |
Cco04g2012 | 652 | SUPERFAMILY | Protein kinase-like (PK-like) | 316 | 632 | IPR011009 | - | |
Cco04g2012 | 652 | ProSiteProfiles | Protein kinase domain profile. | 334 | 621 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco04g2012 | 652 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 455 | 467 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco04g2012 | 652 | SMART | serkin_6 | 334 | 603 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco04g2012 | 652 | Gene3D | - | 31 | 129 | IPR038408 | - | |
Cco04g2012 | 652 | Gene3D | - | 140 | 238 | IPR038408 | - | |
Cco04g2012 | 652 | FunFam | Uncharacterized protein | 410 | 611 | - | - | |
Cco04g2012 | 652 | FunFam | G-type lectin S-receptor-like serine/threonine-protein kinase | 298 | 409 | - | - | |
Cco04g2012 | 652 | Pfam | Salt stress response/antifungal | 159 | 236 | IPR002902 | - | |
Cco04g2012 | 652 | Pfam | Salt stress response/antifungal | 38 | 126 | IPR002902 | - | |
Cco04g2012 | 652 | Pfam | Protein tyrosine and serine/threonine kinase | 338 | 602 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco04g2012 | 652 | PANTHER | RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 | 154 | 621 | - | GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g2012 | Cco-Chr4:34246295 | Cco04g2015 | Cco-Chr4:34259223 | 6.30E-116 | dispersed | |
Cco04g2011 | Cco-Chr4:34241367 | Cco04g2012 | Cco-Chr4:34246295 | 6.20E-74 | tandem | |
Cco04g2012 | Cco-Chr4:34246295 | Cco04g2013 | Cco-Chr4:34252510 | 5.80E-146 | tandem | |
Cco02g0171 | Cco-Chr2:1678000 | Cco04g2012 | Cco-Chr4:34246295 | 3.10E-21 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86787 | PF07714 | PK_Tyr_Ser-Thr | 1.40E-47 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g2012 | - | - | - | 0.0 |