Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g2013 ATGCACAGGAGGGAACAGATCAAGGATCATAGTCATCAGCATATCAACAGTTGCAGCAGCGGCAATTCTGCTAGGCCTATTGTATGGCTCATTTTTATGGATAAACAAAAGACTGGTACTCTAAAGGCTGCTACAGATGACTTTTCAGATGTTCATAAACTTGGAGAAGGGGGGTTTGGTCCAGTTTACAAGGGAAAGCAGATGGGTGGTGAGGAAGTAGTTGTTAAAAAACTATCAACAAAATCAAGTCAAGGACATGAAGAGTTCAAGAATGAAGCAAAGGTCATTTGGAAGCTTCAACATAAGAATCTGGTCAGGCTCTTGGGATGTTGTGTTGAAGGAGAAGAAAAGCTTTTAGTCTATGAGTACATGGCAAATACTAGTCTTGATGCTTTCTTGTTTGATCCATTGAAGTGCAAACAACTTGACTGGCTCAAGCGTGAAAACATTGTCAATGGGATTGCAAGAGGAATTCTCTACCTCCATGAAGATTCTCGACTCAAAATCATCCATAGAGATTTGAAAGCGAGCAATGTACTGTTAGATGAGGAGATGAATCCAAAAATATCAGACTTTGGAACTGCTAGGATATTTGGAGGCAAGCAAATTGATGCCAGCACCAATAGAATAGTTGGAACATATAGTTATATGGCACCAGAGTATGCTATGGAGGGAGTTTTCTCAGTTAAATCCGATGTATACAGTTTTGGAGTTGTTATGCTAGAAGTGATGAGTGGGAGAAAAAACATTGGCTTTCTGAACATGGACAGAACGCAGAACCTTCTGTCATATGCGTGGGAGCTATGGAGTGAAGGTAGAGCAGAAGAAATGATAGACAAGAACTTGGCTGGAGATTGTCCTGAGAGTGAGGCTGTAAAATGGATCCACATAGGGTTGTTGTGTGTGCAAGAAGATCCTGACATCAGGCCCACCATGTCAATGGTTGTTCTAATGCTTGGAAGCCAATCGATTCACCTTCCTCAGCCATCAAAACCTCCATTTCTTACAGCTAGAGGGTCTCTAAGTAGATATCAATATTCAACAACTGAAACAGGGACAAGGTTACACACCACAGATCAGTCGTCTACTACTGCTTCTATCTAG 1104 41.39 MHRREQIKDHSHQHINSCSSGNSARPIVWLIFMDKQKTGTLKAATDDFSDVHKLGEGGFGPVYKGKQMGGEEVVVKKLSTKSSQGHEEFKNEAKVIWKLQHKNLVRLLGCCVEGEEKLLVYEYMANTSLDAFLFDPLKCKQLDWLKRENIVNGIARGILYLHEDSRLKIIHRDLKASNVLLDEEMNPKISDFGTARIFGGKQIDASTNRIVGTYSYMAPEYAMEGVFSVKSDVYSFGVVMLEVMSGRKNIGFLNMDRTQNLLSYAWELWSEGRAEEMIDKNLAGDCPESEAVKWIHIGLLCVQEDPDIRPTMSMVVLMLGSQSIHLPQPSKPPFLTARGSLSRYQYSTTETGTRLHTTDQSSTTASI 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34252510 34254504 - CcPI632755_04g020130.1 Cco04g2013 177238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g2013 367 Gene3D Transferase(Phosphotransferase) domain 1 124 327 - -
Cco04g2013 367 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 38 334 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cco04g2013 367 Pfam Protein tyrosine and serine/threonine kinase 52 316 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g2013 367 SMART serkin_6 48 317 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g2013 367 CDD STKc_IRAK 54 319 - -
Cco04g2013 367 ProSiteProfiles Protein kinase domain profile. 48 335 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g2013 367 SUPERFAMILY Protein kinase-like (PK-like) 39 349 IPR011009 -
Cco04g2013 367 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 32 123 - -
Cco04g2013 367 MobiDBLite consensus disorder prediction 1 20 - -
Cco04g2013 367 Gene3D Phosphorylase Kinase; domain 1 12 123 - -
Cco04g2013 367 FunFam Uncharacterized protein 124 325 - -
Cco04g2013 367 MobiDBLite consensus disorder prediction 348 367 - -
Cco04g2013 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g2013 Cco-Chr4:34252510 Cco04g2026 Cco-Chr4:34328358 3.50E-108 dispersed
Cco04g2012 Cco-Chr4:34246295 Cco04g2013 Cco-Chr4:34252510 5.80E-146 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86788 PF07714 PK_Tyr_Ser-Thr 1.90E-50 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g2013 - - - 0.0