Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g2026 ATGGGTAATAATTGCAGAAAGGTTGTTGGGTTTCTTCAATTCTTTGTCATTTCATTCTTACTCTGTTTTTCTCCTCTGTTCTGCGACGCTGCAAATTCATTTACAAAGGGAAGAGGTTTAAGAGATGGTACTAATGAAACCCTCATATCTCTGAATGAGTCCTACGAACTGGGATTCTTCAGCCCGATAAATGCTTCATCACGATACGTCGGAATATGGTATCACAAGATCGAGGAACAGTCTGTTATTTGGGTTGCGAATAGAGATAGGCCACTTCTTAACAGAGATGGGGTTTTGACAATCGGTGACGACGGGAACTTGGTCGTTCTGGATGGCAACAACGTCTCTGTTTGGACAAGCAATATCACAGCGAATGCATTTGATCCCAGAAACTTAACTCTTCATAACCATGGAGAATTGGTTCTTACGAGCGGAGACGATTCATCGAAAGTTCATTGGAGCAGCTTCGAACACCCCACAGATACATTTCTTCCGAATATGGAGGTGAGAGTGAACTCAGAAATTGGCGAGAAACGAATGTTTATGTCATGGAAATCAGAGACAGATCCGGCCGTCGGAAATTACTGTCTGGGTGTGGATCCTCGTGGAGCTGTACAGATTATCATTTGGAATGGGAATAATCGATGGTGGAGAAGCGGCCATTGGGATAGGCAGATTTTTTCTGGGATTCCAAATATGCGTTCTACGTCTTTGTACGGTTTCAAGATTACCCCTGAAAATGGAAATACCATTAGTGTAACTTTTCAGGCACTGAATGATTCCGATAAGCTGAAATTTCAAATCCTGTGGAACGGTAAAGAAGCACAGCAACGATTGAATGAAGCAAATCGCAAATGGGAAACGATTCGTTTACTGCCATCTAACGATTGCGATTTCTACAATTTTTGTGGGGATTTTGGGGTTTGTTCTGAAACGAGTCGTCCTAAGTGTAGCTGCCCTCAAGGGTTTATTCCCAAAAACAAAGAACAATGGGACAGAGGGACCTGGTCAGATGGGTGTCAGAGGAAGACTCCATTGCTTCAGGAGAGAATGAACAGTAATCCGAATGGAACTATTGAAGATGGTGAAGAAGATGGGTTTGTGCCCGTACCATTTGTGAAATTGCCCGATTTCATAACTGGAGTAGTGGTGGATTCGTGTAGAGATAGATGTTCCAACAGTTCTTCGTGTGTTGCATATTCGGATGCTCCTGGAATTGGCTGTGCTACTTGGGATGGACCTCTAAAAGATATTCAGAAATTCGATGGTGTTGGGAATACTTTGAACATTCGTCTCGCTCATTCTGATTTGATATCTGTAGATAGTGAGAGCAAATTGTCAGCCGGTGTGATTGTATTGATATGTTTAGGAGCAGCAGCTGCCATAGCCATAATAGCGTTTCTGCTATGGAAATTCGGAGGCAAATTGAAAGGTTCACCGGCTGCTTCTTCAAGTGAACCTCAGAACAAAACTGAAGTACCAATGTTTGACCTGAGCAAGAGCAGAGAACTTTCAGCAGAGCTTTCAGGGCCATACGAATTAGGCATAGAAGGCGAACAATTGAGTGGACCAGATTTGCCAATGTTCAATTTCAACTGTATAGTTGCGGCTACTGATAACTTTTCTGAGGAAAACAAGCTTGGCCAGGGAGGCTTCGGCCCTGTATACAAGGGAAAGCTTCCATGTGGACAAGAAGTTGCTGTCAAGAGGCTTTCAGTCCGGTCTGGCCAAGGTCTAGAAGAGTTTAAGAATGAGATTATACTAATAGGAAAGTTACAGCATCGAAACCTCGTCAGACTGTTGGGCTACTGCATTCAAGGAGAGGACAAGATGCTGCTCTATGAATATATGCCAAACAAAAGCTTGGATTGGTTTCTTTTCGATCCAAACAAGCAGGCACTACTAGACTGGAAAAAACGGTTGTCAATCATCGAGGGAATTGCACGAGGGCTGCTATACCTTCATCGAGACTCGAGACTTCTTATTATTCATAGAGATTTGAAAGCTAGCAACATTTTGCTAGATGAAGACATGAATCCAAAGATATCAGACTTTGGCATGGCTAGAATATTTGGTGGAAACCAAAATGAGGCAACAAATACAATTCGAGTTGTTGGCACATATGGTTACATGGCTCCAGAGTACGCAATGGAAGGTTTATTTTCGGTGAAATCAGATGTCTATAGTTTTGGTGTATTATTATTGGAAATAATCTGTGGTCGGAGGAATACTAGCTTTCGCTCAACTGAATACTTAACCCTTATTAGCTATGCTTGGAAACTTTGGAATGAAGGTAGAGCGATTGAACTTCTCGACCCGTATATTAGCGATTCATCCCCTGAGAATGAAGTATTGAAATGCATACATGTGGCAATGTTGTGTGTTCAAGACTCTCCAGCATATAGGCCAACATTGCAATCCTTGGTACTAATGCTAGAGAGTGAATCTACATCTCTACCACAGCCAAGACAACCCACCTATACTTCAACAAGAGCCTCGATCGATACAGACTTGTTTACAGAAGGCCACGACATTGTATCGTCAAACGACATAACAGTAACAATGTTGGATGGTAAGTTAAAGCAGAAGCAAACAGGTTGA 2601 42.37 MGNNCRKVVGFLQFFVISFLLCFSPLFCDAANSFTKGRGLRDGTNETLISLNESYELGFFSPINASSRYVGIWYHKIEEQSVIWVANRDRPLLNRDGVLTIGDDGNLVVLDGNNVSVWTSNITANAFDPRNLTLHNHGELVLTSGDDSSKVHWSSFEHPTDTFLPNMEVRVNSEIGEKRMFMSWKSETDPAVGNYCLGVDPRGAVQIIIWNGNNRWWRSGHWDRQIFSGIPNMRSTSLYGFKITPENGNTISVTFQALNDSDKLKFQILWNGKEAQQRLNEANRKWETIRLLPSNDCDFYNFCGDFGVCSETSRPKCSCPQGFIPKNKEQWDRGTWSDGCQRKTPLLQERMNSNPNGTIEDGEEDGFVPVPFVKLPDFITGVVVDSCRDRCSNSSSCVAYSDAPGIGCATWDGPLKDIQKFDGVGNTLNIRLAHSDLISVDSESKLSAGVIVLICLGAAAAIAIIAFLLWKFGGKLKGSPAASSSEPQNKTEVPMFDLSKSRELSAELSGPYELGIEGEQLSGPDLPMFNFNCIVAATDNFSEENKLGQGGFGPVYKGKLPCGQEVAVKRLSVRSGQGLEEFKNEIILIGKLQHRNLVRLLGYCIQGEDKMLLYEYMPNKSLDWFLFDPNKQALLDWKKRLSIIEGIARGLLYLHRDSRLLIIHRDLKASNILLDEDMNPKISDFGMARIFGGNQNEATNTIRVVGTYGYMAPEYAMEGLFSVKSDVYSFGVLLLEIICGRRNTSFRSTEYLTLISYAWKLWNEGRAIELLDPYISDSSPENEVLKCIHVAMLCVQDSPAYRPTLQSLVLMLESESTSLPQPRQPTYTSTRASIDTDLFTEGHDIVSSNDITVTMLDGKLKQKQTG 866
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34328358 34331856 - CcPI632755_04g020260.1 Cco04g2026 177251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g2026 866 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 26 156 - -
Cco04g2026 866 Pfam S-locus glycoprotein domain 217 327 IPR000858 GO:0048544(InterPro)
Cco04g2026 866 Pfam Domain of unknown function (DUF3403) 814 858 IPR021820 GO:0004674(InterPro)
Cco04g2026 866 PIRSF SRK 5 859 IPR024171 GO:0004674(InterPro)
Cco04g2026 866 ProSiteProfiles Protein kinase domain profile. 541 827 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g2026 866 CDD STKc_IRAK 547 813 - -
Cco04g2026 866 ProSiteProfiles EGF-like domain profile. 293 329 IPR000742 -
Cco04g2026 866 CDD B_lectin 43 159 IPR001480 -
Cco04g2026 866 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 31 825 - -
Cco04g2026 866 CDD PAN_AP_plant 360 433 - -
Cco04g2026 866 Gene3D Transferase(Phosphotransferase) domain 1 617 830 - -
Cco04g2026 866 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 512 616 - -
Cco04g2026 866 SMART blect_4 39 159 IPR001480 -
Cco04g2026 866 Pfam D-mannose binding lectin 82 185 IPR001480 -
Cco04g2026 866 ProSiteProfiles Bulb-type lectin domain profile. 31 155 IPR001480 -
Cco04g2026 866 SUPERFAMILY Protein kinase-like (PK-like) 526 836 IPR011009 -
Cco04g2026 866 Pfam PAN-like domain 363 417 IPR003609 -
Cco04g2026 866 Pfam Protein tyrosine and serine/threonine kinase 544 810 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g2026 866 SUPERFAMILY alpha-D-mannose-specific plant lectins 81 223 IPR036426 -
Cco04g2026 866 ProSitePatterns Serine/Threonine protein kinases active-site signature. 662 674 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g2026 866 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 617 820 - -
Cco04g2026 866 Gene3D - 29 156 IPR036426 -
Cco04g2026 866 Gene3D Phosphorylase Kinase; domain 1 516 616 - -
Cco04g2026 866 SMART serkin_6 541 812 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0541 Cco-Chr3:5559821 Cco04g2026 Cco-Chr4:34328358 3.40E-199 dispersed
Cco03g0542 Cco-Chr3:5567545 Cco04g2026 Cco-Chr4:34328358 1.70E-195 dispersed
Cco03g0543 Cco-Chr3:5585248 Cco04g2026 Cco-Chr4:34328358 3.30E-89 dispersed
Cco03g0544 Cco-Chr3:5603088 Cco04g2026 Cco-Chr4:34328358 2.10E-73 dispersed
Cco04g2013 Cco-Chr4:34252510 Cco04g2026 Cco-Chr4:34328358 3.50E-108 dispersed
Cco04g2026 Cco-Chr4:34328358 Cco05g1723 Cco-Chr5:25503525 1.80E-179 dispersed
Cco10g2223 Cco-Chr10:35239310 Cco04g2026 Cco-Chr4:34328358 3.20E-65 dispersed
Cco11g1609 Cco-Chr11:28941635 Cco04g2026 Cco-Chr4:34328358 4.60E-72 dispersed
Cco07g0638 Cco-Chr7:10124302 Cco04g2026 Cco-Chr4:34328358 5.80E-86 transposed
Cco02g0155 Cco-Chr2:1580425 Cco04g2026 Cco-Chr4:34328358 1.90E-117 wgd
Cco03g0535 Cco-Chr3:5490912 Cco04g2026 Cco-Chr4:34328358 1.60E-172 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86791 PF07714 PK_Tyr_Ser-Thr 3.50E-47 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g2026 - - - 0.0