Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g2060 ATGGGTTGTCCAAACTGGAATTTGTTCATGAAGATCTTAATTGGGCTGCTCTTGGTCTTCATCAACCCTTTTTGCTTTGGAGATACTGACCTCCGCGATGTTGCTGCAATCAATGCATTGTTTATTTCTCTTGGCTACCCTCCTTTGCGAGGATGGATTCTTGTGGGAGGTGATCCATGTGGGGAGAAGTGGCAAGGGGTTGAATGTGTATTCTCAAATATAACAGCGATACAACTCAGTGGCTTGAATTTGGGAGGAGAGCTAGGCACTAGCTTGGACCAATTTGAGTCAATAATATCAATGGATCTTAGCAACAATCATATTGGAGGGAATATTCCATCTACATTGCCCGCTACACTGAGAAGTTTTTCGTTATCAGCTAATCAATTCACTGGAAGCATTCCCCCTGCATTTGCCTTGCTAACACAACTAATGGACCTGTCACTAAATAATAACCTTCTTACCGGGGTAATACCTGATGTCTTCCAGCTGCTTAATGGCTTGAATAACTTGGACTTGTCAGGCAACAACTTGAGCGGTCAGCTGCCTCCCTCGATGGCTGATTTGTTCTCCCTTGCTACATTGCACTTGCAGAACAATAAACTTTCTGGGATGCTCGACGCTCTACAGGATCTTCCCTTGTCGGATTTGAATATAGAGAACAACCTATTTTCTGGACCTATACCTGCAAAGTTGTTGGGCATTCCAAATTTCAGAAAAGATGGGAACCCTTTTAATACTACGATAATTTCGTCTGCACCTGCTTTAGCCCCTTCACCATTTGCTGTTGCGCCAGTTACTGTGGGACAACCAACCAGACAGACAGGTGCAGGTCAGCCATTGTCGTCAGGGACTCCTGGATCGAATGGAGCAAGGACCTTTTTCTCTGTTAAGCGGATAATTTGGATTGTTATTATTGGCACAGCAATATTATTAGCATTGGGATTCTGTCTTCTCGTGTCGATATGTTTGAAAAGAAGCAAGCATCGAGAAGACACCGAGATTCTTCGTGACAACGCTGATATGGCTTCTAAATATAAGCCTAAACCTACAAAGACCTCGGTTGAAGGTGATGACATGGAGAAAGGTCCAAGGGAGACCACTCTTAAGCCACTTGATAGAGACAGAATGAAGGATAGAATAATGGATTTTACCACCTCAAGGCTACATGATAGACAGGACACAAATGGGAAAAGAAAAGATGCCTCTAATACGAGTTTTCGTAAAGACCTTACGGAGAGTTCGAGCATAAGCATAAATGACTTCCCTGCACCACCTCCTCCCCCTCCTTTTCCACTCCTTTCAACTCAGGAGATTGCAAAACCAATAGTGGCAGCTGAAGTGCCCAGTAGAGTACCTAGAAAACTGAACACAAGTTCTTTAAAAGTTTTCACAATTGCGTCACTTCAGCAGTATACTAATAGTTTCTCTGAGGATAATCTTCTGGGGAGAGGCATGCTTGGCAGTGTCTATAGAGCTGAACTTCCAAGTGGGAGGCTTCTGGCTGTTAAGAAACTGGACGGATCCTCTTCAACTAATTGGAGCGATGATGAATTTCACAACCTTGTGTCTAATATATGCCAAATTCGGCACGATAACATTGTGGAGCTTGTGGGATATTGCGCTGAGCATGGACAATATCTACTCATTTATGAGTATTGTAAAAACGGCACGCTCTATGATGCACTCCATGTCGACAAGGAGATGCATCAGAAGCTTTCATGGAATGTACGTGTGAGGATTGCACTTGGAGCTGCACGTGCCCTCGAGTATCTGCATGAAGCCTGTCAACCGCCTACCATGCACCAAAACTTGAAGTCTGCTAACATTCTCTTAGACAATGAGCTAAAACCACAAGTCTCTGACTCTGGCTTAGCTCGGCTGCTTTCTTCAGCTAGTCAGTCGGCTGCACGATTCCTCCCAGCTCATGGTTATAGTGCTCCTGAATTTGAGTTAGGAACTTACACTTACCAAAGTGATATTTTTAGCTTCGGAGTCGTAATGCTAGAGCTTCTCACCGGTCGGAAGTCCTGTGACCGATCACTGCCTCGAGGAGAGCAATTTCTTGTTCGATGGGCTGTTCCAAGGCTGCATGATATTGATGCATTATCAAGAATGGTCGATCCATCTCTTAATGGCATGTATCCTGTTAAGTCGTTATCGCGCTTTGCTGATATTATTTCCTCCTGTATAATGAGAGAGCCCGAATTTCGGCCCCCAATCTCTGAAATTGTACAGGAACTCTTACAAATGCTGTAG 2259 44.13 MGCPNWNLFMKILIGLLLVFINPFCFGDTDLRDVAAINALFISLGYPPLRGWILVGGDPCGEKWQGVECVFSNITAIQLSGLNLGGELGTSLDQFESIISMDLSNNHIGGNIPSTLPATLRSFSLSANQFTGSIPPAFALLTQLMDLSLNNNLLTGVIPDVFQLLNGLNNLDLSGNNLSGQLPPSMADLFSLATLHLQNNKLSGMLDALQDLPLSDLNIENNLFSGPIPAKLLGIPNFRKDGNPFNTTIISSAPALAPSPFAVAPVTVGQPTRQTGAGQPLSSGTPGSNGARTFFSVKRIIWIVIIGTAILLALGFCLLVSICLKRSKHREDTEILRDNADMASKYKPKPTKTSVEGDDMEKGPRETTLKPLDRDRMKDRIMDFTTSRLHDRQDTNGKRKDASNTSFRKDLTESSSISINDFPAPPPPPPFPLLSTQEIAKPIVAAEVPSRVPRKLNTSSLKVFTIASLQQYTNSFSEDNLLGRGMLGSVYRAELPSGRLLAVKKLDGSSSTNWSDDEFHNLVSNICQIRHDNIVELVGYCAEHGQYLLIYEYCKNGTLYDALHVDKEMHQKLSWNVRVRIALGAARALEYLHEACQPPTMHQNLKSANILLDNELKPQVSDSGLARLLSSASQSAARFLPAHGYSAPEFELGTYTYQSDIFSFGVVMLELLTGRKSCDRSLPRGEQFLVRWAVPRLHDIDALSRMVDPSLNGMYPVKSLSRFADIISSCIMREPEFRPPISEIVQELLQML 752
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34598832 34602971 - CcPI632755_04g020600.1 Cco04g2060 177285

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g2060 752 Gene3D Ribonuclease Inhibitor 39 253 IPR032675 -
Cco04g2060 752 PANTHER LEUCINE RICH REPEAT KINASE 2 71 750 IPR051420 -
Cco04g2060 752 MobiDBLite consensus disorder prediction 341 429 - -
Cco04g2060 752 Pfam Leucine Rich Repeat 98 116 IPR001611 GO:0005515(InterPro)
Cco04g2060 752 SUPERFAMILY L domain-like 35 237 - -
Cco04g2060 752 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 30 256 - -
Cco04g2060 752 Gene3D Transferase(Phosphotransferase) domain 1 554 752 - -
Cco04g2060 752 ProSiteProfiles Protein kinase domain profile. 476 752 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g2060 752 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 554 752 - -
Cco04g2060 752 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 445 553 - -
Cco04g2060 752 Pfam Protein tyrosine and serine/threonine kinase 480 748 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g2060 752 SUPERFAMILY Protein kinase-like (PK-like) 453 748 IPR011009 -
Cco04g2060 752 MobiDBLite consensus disorder prediction 341 407 - -
Cco04g2060 752 Gene3D Phosphorylase Kinase; domain 1 443 553 - -
Cco04g2060 752 Pfam Leucine rich repeat 119 178 IPR001611 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g2060 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g2060 Cco-Chr4:34598832 Cco07g1502 Cco-Chr7:29092005 1.60E-110 dispersed
Cco10g1749 Cco-Chr10:31042897 Cco04g2060 Cco-Chr4:34598832 1.30E-60 wgd
Cco02g0132 Cco-Chr2:1379051 Cco04g2060 Cco-Chr4:34598832 1.30E-152 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco02g0132 . 34 788 Strubbelig Receptor Gene Family AT4G03390 62.3 6.6e-205 711.1
Cco04g2060 . 17 752 Strubbelig Receptor Gene Family AT4G03390 54.2 2.8e-163 572.8
Cco09g0147 . 393 687 Strubbelig Receptor Gene Family AT4G03390 58.1 1.3e-91 334.7
Cco10g1720 . 1 726 Strubbelig Receptor Gene Family AT5G06820 53.7 6.5e-186 647.9
Cco08g0620 . 22 704 Strubbelig Receptor Gene Family AT1G78980 60.8 1.3e-196 683.3
Cco07g1502 . 145 829 Strubbelig Receptor Gene Family AT1G78980 51.0 2.6e-144 509.6
Cco08g0620 . 20 682 Strubbelig Receptor Gene Family AT3G13065 53.9 1.7e-148 523.5
Cco01g1034 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.4 6.1e-85 312.4
Cco10g1720 . 1 726 Strubbelig Receptor Gene Family AT5G06820 53.7 6.5e-186 647.9
Cco02g0132 . 34 788 Strubbelig Receptor Gene Family AT4G03390 62.3 6.6e-205 711.1
Cco04g2060 . 17 752 Strubbelig Receptor Gene Family AT4G03390 54.2 2.8e-163 572.8
Cco09g0147 . 393 687 Strubbelig Receptor Gene Family AT4G03390 58.1 1.3e-91 334.7
Cco08g0620 . 20 682 Strubbelig Receptor Gene Family AT3G13065 53.9 1.7e-148 523.5
Cco08g0620 . 22 704 Strubbelig Receptor Gene Family AT1G78980 60.8 1.3e-196 683.3
Cco07g1502 . 145 829 Strubbelig Receptor Gene Family AT1G78980 51.0 2.6e-144 509.6
Cco07g1502 . 146 829 Strubbelig Receptor Gene Family AT1G53730 59.5 2.9e-194 675.6
Cco09g0147 . 1 712 Strubbelig Receptor Gene Family AT1G53730 60.5 6.4e-186 647.9
Cco01g1034 . 9 689 Strubbelig Receptor Gene Family AT1G53730 51.4 4.5e-147 518.8
Cco07g1502 . 146 824 Strubbelig Receptor Gene Family AT3G14350 56.1 4.5e-173 605.1
Cco09g0147 . 6 702 Strubbelig Receptor Gene Family AT3G14350 55.3 8.3e-167 584.3
Cco01g1034 . 201 711 Strubbelig Receptor Gene Family AT4G22130 68.3 2.5e-177 619.0
Cco07g1502 . 508 836 Strubbelig Receptor Gene Family AT4G22130 62.8 8.9e-119 424.5
Cco09g0147 . 391 704 Strubbelig Receptor Gene Family AT4G22130 64.9 1.7e-117 420.2
Cco02g0132 . 485 790 Strubbelig Receptor Gene Family AT4G22130 59.9 3.5e-107 386.0
Cco08g0620 . 357 704 Strubbelig Receptor Gene Family AT4G22130 52.4 9.3e-100 361.3
Cco04g2060 . 464 752 Strubbelig Receptor Gene Family AT4G22130 59.5 2.3e-98 356.7
Cco10g1720 . 387 709 Strubbelig Receptor Gene Family AT4G22130 52.0 5.5e-92 335.5
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86792 PF07714 PK_Tyr_Ser-Thr 2.20E-38 CL0016 Cco PK