Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g2060 ATGGGTTGTCCAAACTGGAATTTGTTCATGAAGATCTTAATTGGGCTGCTCTTGGTCTTCATCAACCCTTTTTGCTTTGGAGATACTGACCTCCGCGATGTTGCTGCAATCAATGCATTGTTTATTTCTCTTGGCTACCCTCCTTTGCGAGGATGGATTCTTGTGGGAGGTGATCCATGTGGGGAGAAGTGGCAAGGGGTTGAATGTGTATTCTCAAATATAACAGCGATACAACTCAGTGGCTTGAATTTGGGAGGAGAGCTAGGCACTAGCTTGGACCAATTTGAGTCAATAATATCAATGGATCTTAGCAACAATCATATTGGAGGGAATATTCCATCTACATTGCCCGCTACACTGAGAAGTTTTTCGTTATCAGCTAATCAATTCACTGGAAGCATTCCCCCTGCATTTGCCTTGCTAACACAACTAATGGACCTGTCACTAAATAATAACCTTCTTACCGGGGTAATACCTGATGTCTTCCAGCTGCTTAATGGCTTGAATAACTTGGACTTGTCAGGCAACAACTTGAGCGGTCAGCTGCCTCCCTCGATGGCTGATTTGTTCTCCCTTGCTACATTGCACTTGCAGAACAATAAACTTTCTGGGATGCTCGACGCTCTACAGGATCTTCCCTTGTCGGATTTGAATATAGAGAACAACCTATTTTCTGGACCTATACCTGCAAAGTTGTTGGGCATTCCAAATTTCAGAAAAGATGGGAACCCTTTTAATACTACGATAATTTCGTCTGCACCTGCTTTAGCCCCTTCACCATTTGCTGTTGCGCCAGTTACTGTGGGACAACCAACCAGACAGACAGGTGCAGGTCAGCCATTGTCGTCAGGGACTCCTGGATCGAATGGAGCAAGGACCTTTTTCTCTGTTAAGCGGATAATTTGGATTGTTATTATTGGCACAGCAATATTATTAGCATTGGGATTCTGTCTTCTCGTGTCGATATGTTTGAAAAGAAGCAAGCATCGAGAAGACACCGAGATTCTTCGTGACAACGCTGATATGGCTTCTAAATATAAGCCTAAACCTACAAAGACCTCGGTTGAAGGTGATGACATGGAGAAAGGTCCAAGGGAGACCACTCTTAAGCCACTTGATAGAGACAGAATGAAGGATAGAATAATGGATTTTACCACCTCAAGGCTACATGATAGACAGGACACAAATGGGAAAAGAAAAGATGCCTCTAATACGAGTTTTCGTAAAGACCTTACGGAGAGTTCGAGCATAAGCATAAATGACTTCCCTGCACCACCTCCTCCCCCTCCTTTTCCACTCCTTTCAACTCAGGAGATTGCAAAACCAATAGTGGCAGCTGAAGTGCCCAGTAGAGTACCTAGAAAACTGAACACAAGTTCTTTAAAAGTTTTCACAATTGCGTCACTTCAGCAGTATACTAATAGTTTCTCTGAGGATAATCTTCTGGGGAGAGGCATGCTTGGCAGTGTCTATAGAGCTGAACTTCCAAGTGGGAGGCTTCTGGCTGTTAAGAAACTGGACGGATCCTCTTCAACTAATTGGAGCGATGATGAATTTCACAACCTTGTGTCTAATATATGCCAAATTCGGCACGATAACATTGTGGAGCTTGTGGGATATTGCGCTGAGCATGGACAATATCTACTCATTTATGAGTATTGTAAAAACGGCACGCTCTATGATGCACTCCATGTCGACAAGGAGATGCATCAGAAGCTTTCATGGAATGTACGTGTGAGGATTGCACTTGGAGCTGCACGTGCCCTCGAGTATCTGCATGAAGCCTGTCAACCGCCTACCATGCACCAAAACTTGAAGTCTGCTAACATTCTCTTAGACAATGAGCTAAAACCACAAGTCTCTGACTCTGGCTTAGCTCGGCTGCTTTCTTCAGCTAGTCAGTCGGCTGCACGATTCCTCCCAGCTCATGGTTATAGTGCTCCTGAATTTGAGTTAGGAACTTACACTTACCAAAGTGATATTTTTAGCTTCGGAGTCGTAATGCTAGAGCTTCTCACCGGTCGGAAGTCCTGTGACCGATCACTGCCTCGAGGAGAGCAATTTCTTGTTCGATGGGCTGTTCCAAGGCTGCATGATATTGATGCATTATCAAGAATGGTCGATCCATCTCTTAATGGCATGTATCCTGTTAAGTCGTTATCGCGCTTTGCTGATATTATTTCCTCCTGTATAATGAGAGAGCCCGAATTTCGGCCCCCAATCTCTGAAATTGTACAGGAACTCTTACAAATGCTGTAG 2259 44.13 MGCPNWNLFMKILIGLLLVFINPFCFGDTDLRDVAAINALFISLGYPPLRGWILVGGDPCGEKWQGVECVFSNITAIQLSGLNLGGELGTSLDQFESIISMDLSNNHIGGNIPSTLPATLRSFSLSANQFTGSIPPAFALLTQLMDLSLNNNLLTGVIPDVFQLLNGLNNLDLSGNNLSGQLPPSMADLFSLATLHLQNNKLSGMLDALQDLPLSDLNIENNLFSGPIPAKLLGIPNFRKDGNPFNTTIISSAPALAPSPFAVAPVTVGQPTRQTGAGQPLSSGTPGSNGARTFFSVKRIIWIVIIGTAILLALGFCLLVSICLKRSKHREDTEILRDNADMASKYKPKPTKTSVEGDDMEKGPRETTLKPLDRDRMKDRIMDFTTSRLHDRQDTNGKRKDASNTSFRKDLTESSSISINDFPAPPPPPPFPLLSTQEIAKPIVAAEVPSRVPRKLNTSSLKVFTIASLQQYTNSFSEDNLLGRGMLGSVYRAELPSGRLLAVKKLDGSSSTNWSDDEFHNLVSNICQIRHDNIVELVGYCAEHGQYLLIYEYCKNGTLYDALHVDKEMHQKLSWNVRVRIALGAARALEYLHEACQPPTMHQNLKSANILLDNELKPQVSDSGLARLLSSASQSAARFLPAHGYSAPEFELGTYTYQSDIFSFGVVMLELLTGRKSCDRSLPRGEQFLVRWAVPRLHDIDALSRMVDPSLNGMYPVKSLSRFADIISSCIMREPEFRPPISEIVQELLQML 752
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34598832 34602971 - CcPI632755_04g020600.1 Cco04g2060 177285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g2060 752 Gene3D Ribonuclease Inhibitor 39 253 IPR032675 -
Cco04g2060 752 PANTHER LEUCINE RICH REPEAT KINASE 2 71 750 IPR051420 -
Cco04g2060 752 MobiDBLite consensus disorder prediction 341 429 - -
Cco04g2060 752 Pfam Leucine Rich Repeat 98 116 IPR001611 GO:0005515(InterPro)
Cco04g2060 752 SUPERFAMILY L domain-like 35 237 - -
Cco04g2060 752 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 30 256 - -
Cco04g2060 752 Gene3D Transferase(Phosphotransferase) domain 1 554 752 - -
Cco04g2060 752 ProSiteProfiles Protein kinase domain profile. 476 752 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g2060 752 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 554 752 - -
Cco04g2060 752 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 445 553 - -
Cco04g2060 752 Pfam Protein tyrosine and serine/threonine kinase 480 748 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g2060 752 SUPERFAMILY Protein kinase-like (PK-like) 453 748 IPR011009 -
Cco04g2060 752 MobiDBLite consensus disorder prediction 341 407 - -
Cco04g2060 752 Gene3D Phosphorylase Kinase; domain 1 443 553 - -
Cco04g2060 752 Pfam Leucine rich repeat 119 178 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g2060 Cco-Chr4:34598832 Cco07g1502 Cco-Chr7:29092005 1.60E-110 dispersed
Cco10g1749 Cco-Chr10:31042897 Cco04g2060 Cco-Chr4:34598832 1.30E-60 wgd
Cco02g0132 Cco-Chr2:1379051 Cco04g2060 Cco-Chr4:34598832 1.30E-152 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86792 PF07714 PK_Tyr_Ser-Thr 2.20E-38 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g2060 - - - 0.0