Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g2089 | ATGGACGAAGAGGCTAATTCTTGGCTTAGGAGAACGAAGTTTTCTCACACAGTTTATCATCGATGGGACTCATTAAGATTAAACCCAGTTCCTTTCATCGTCGAACCACCTCGTAATTCTGGCTTGAAATCGAGGCCTACATCAGCTTCCTCCACTCAGAAACCAAATCCTGATATTTCGAAGATTCAGCGAAGCTTCATATCCAATAAACAGAGGTCTCTGTCTCCTCTTCCCGAGAGCAATCTCTCTGAAGTTTTCAAGGAAGCGAAATCCGTCAGTAAGAGATTCTCAACTCCAACTCCTCGACTTAGAGAACGAACTAAGGAATTCAAGAACAAGCTATTCAATAAGGACCCTCAAGATTCAAAATCGGCCGATTCCAAGTCATCGTCGAATACCAGTCCCCTGAAACTCCTATCTTCGGGGAAAGGGGGTGATAAGTCGAAGTTCCGGAAAGATTCTTCCTGGACCAAATATTTCGATTCCGGTGGAGGAAAAGTCACCGCGGTCGAAACAGCCGAAGACTGGACTGTTGATCTCTCCAAGTTGTTTGTTGGGTTAAGGTTTGCTCATGGAGCTCACAGTCGTCTTTATCATGGAAAATACAATGATGGACCTGTTGCTGTTAAAATTATTAGGGTGCCCGAGGATGACGAAAATGGAACGCTTGCTTCTCGATTGGAGAAACAATTTACCAGAGAAGTTACCCTTTTATCTCGTCTCCATCATCCGAATGTTATAAAGTTTGTAGCTGCGAGTAGGAACCCACCTGTATACTGTGTCATTACTGAATATTTGTCCCAAGGATCATTACGGGCATATTTACACAAACTTGAGCACCAATCCCTCCCTTTGCAAAAACTAATTGAATTTGCTTTAGATGTCGCTCGTGGCATGGAATACCTTCACTCACAAGGCGTAATTCATCGGGATCTTAAGCCTGAGAATGTTCTTATTGATGAAGACTTCCACTTGAAAATTGCAGATTTTGGTATAGCTTGTCCTGAGGCCTTTTTCGACCCATTAGCTGATGATCCCGGAACTTATCGGTGGATGGCACCGGAGATGATCAAACATAAACCTTGTAGTCGAAAGGTCGATGTGTACAGCTTTGGGCTTATGTTGTGGGAAATGGTGTCTGGTGCAATTCCATACGAGGATATGACCCCCATTCAAGCAGCCTTTGCTGTTGTGAATAAGAATCTTAGGCCTGTTATTTCAAGTGATTGTCCATTGGCAATGCGGGCTTTAATCGAGCAATGTTGGTCCCTGCAACCGGACAAGAGACCCGATTTCTGGCAGATTGTGAAGGTACTAGAGCAATTCGAATCTTCGCTTGCCCGTGATGGGACACTGAATTTATTAGGTAACCCTCTGTCTAGTTTCCAAGACCATAAGAAAGGGCTTCTCCATTGGATTCAAAAGCTTGGCCCCCTGCATCCTGAAACCTCGCCCTCTCCCGTGCCGAAACCGAAATTCTCGTAA | 1485 | 44.44 | MDEEANSWLRRTKFSHTVYHRWDSLRLNPVPFIVEPPRNSGLKSRPTSASSTQKPNPDISKIQRSFISNKQRSLSPLPESNLSEVFKEAKSVSKRFSTPTPRLRERTKEFKNKLFNKDPQDSKSADSKSSSNTSPLKLLSSGKGGDKSKFRKDSSWTKYFDSGGGKVTAVETAEDWTVDLSKLFVGLRFAHGAHSRLYHGKYNDGPVAVKIIRVPEDDENGTLASRLEKQFTREVTLLSRLHHPNVIKFVAASRNPPVYCVITEYLSQGSLRAYLHKLEHQSLPLQKLIEFALDVARGMEYLHSQGVIHRDLKPENVLIDEDFHLKIADFGIACPEAFFDPLADDPGTYRWMAPEMIKHKPCSRKVDVYSFGLMLWEMVSGAIPYEDMTPIQAAFAVVNKNLRPVISSDCPLAMRALIEQCWSLQPDKRPDFWQIVKVLEQFESSLARDGTLNLLGNPLSSFQDHKKGLLHWIQKLGPLHPETSPSPVPKPKFS | 494 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 34819877 | 34822239 | - | CcPI632755_04g020890.1 | Cco04g2089 | 177314 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g2089 | 494 | MobiDBLite | consensus disorder prediction | 125 | 139 | - | - | |
Cco04g2089 | 494 | FunFam | Kinase suppressor of Ras 1 | 172 | 266 | - | - | |
Cco04g2089 | 494 | Gene3D | Phosphorylase Kinase; domain 1 | 171 | 267 | - | - | |
Cco04g2089 | 494 | MobiDBLite | consensus disorder prediction | 41 | 80 | - | - | |
Cco04g2089 | 494 | FunFam | serine/threonine-protein kinase HT1 | 268 | 457 | - | - | |
Cco04g2089 | 494 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 88 | 441 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
Cco04g2089 | 494 | Pfam | Protein tyrosine and serine/threonine kinase | 190 | 439 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco04g2089 | 494 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 307 | 319 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco04g2089 | 494 | SUPERFAMILY | Protein kinase-like (PK-like) | 168 | 439 | IPR011009 | - | |
Cco04g2089 | 494 | MobiDBLite | consensus disorder prediction | 36 | 151 | - | - | |
Cco04g2089 | 494 | CDD | STKc_MAP3K-like | 190 | 439 | - | - | |
Cco04g2089 | 494 | Gene3D | Transferase(Phosphotransferase) domain 1 | 268 | 458 | - | - | |
Cco04g2089 | 494 | MobiDBLite | consensus disorder prediction | 99 | 124 | - | - | |
Cco04g2089 | 494 | ProSiteProfiles | Protein kinase domain profile. | 183 | 443 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco04g2089 | 494 | PRINTS | Tyrosine kinase catalytic domain signature | 366 | 388 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco04g2089 | 494 | PRINTS | Tyrosine kinase catalytic domain signature | 410 | 432 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco04g2089 | 494 | PRINTS | Tyrosine kinase catalytic domain signature | 263 | 276 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco04g2089 | 494 | PRINTS | Tyrosine kinase catalytic domain signature | 301 | 319 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco04g2089 | 494 | PRINTS | Tyrosine kinase catalytic domain signature | 347 | 357 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco04g2089 | 494 | SMART | serkin_6 | 183 | 442 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g1941 | Cco-Chr4:33738205 | Cco04g2089 | Cco-Chr4:34819877 | 1.70E-89 | dispersed | |
Cco04g2089 | Cco-Chr4:34819877 | Cco11g1147 | Cco-Chr11:22402226 | 5.10E-78 | dispersed | |
Cco02g2070 | Cco-Chr2:33613878 | Cco04g2089 | Cco-Chr4:34819877 | 8.00E-30 | transposed | |
Cco10g1622 | Cco-Chr10:29583316 | Cco04g2089 | Cco-Chr4:34819877 | 2.90E-36 | transposed | |
Cco03g0625 | Cco-Chr3:6398301 | Cco04g2089 | Cco-Chr4:34819877 | 8.70E-155 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86793 | PF07714 | PK_Tyr_Ser-Thr | 5.90E-60 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g2089 | - | - | - | 0.0 |