Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g2093 ATGGACGACCACCACAATCCCCACCACCACCACCACCATGACCTCCCCCCATTCCCCTCCGCCGCCGCCATTCTCCACTCTCCTCCTCCTCCTCCTCAAAATTCATGTTATCTCCCACCTATTCTTTCTCAAACTTGCTTGGGATTCTCCTCCTCCGCCCCACAATCCTATTTTTACTCAAATCCTCCTCCTCTACATGAACAACTTCCATCCCATTTCCCACCTTCTTCCACCTTCCTCACTTATGGTTTCAATGAGCCAACTAATTCTCTATTCCCTAAAGATGAAGGAAGAAGGGCTATGGATGCTTGGAGTACTAAAGTCGCTCGTACCAACCGAAGACTCGCCCGCCAAAGAACCCTTACTTTAACCCGAACCACTTCTTCTTCCTCTTCTGCAGCTTATAATGGTTGTAATAATGATGAATATTCTAAGGGTTTAACAATAACCCACTTCCCAAACACTGATCCCTCTCACAATAATCGCAATCTTTTTACCTTTTGCACTCCAGATAACAAGATTTTGAGAATGCTGCTGAAGAAGGAGCTGAAGAACAGTGATGTTGGATCTTTGGGCAGGATTGTCCTCCCCAAGAGGGAGGCAGAAGAGAACCTTCCATTTCTCACTGATAAGGAAGGTATCCAAATTGTGGTGAGAGATGTGAACTCAATCAGAAAATGGACCATGAAATACAAGTACTGGGCAAACAATAGAAGTAGAATGTATGTTCTGGAGAACACAGGGGAATTCGTTAGACAAAATGGTCTGTTGATGGGAGATTCAATGACACTATACGAGGATGACTGCAAGAACCTCTACGTGGCGGTTGAAAAAGGTGAGAATCATTCAAGAATGGAAGAAAATTACAAGCAGCAACAGCAGCAACAACAACAGCAGTGTGGTAATTTGTCAAACATGGAAATTAAAGACGAAGAAGAAGATGCTTCATTAGCTTTGTTGATCGAAGAGCTCAAACACAAAGCCGACGACGACCCCCACGCGCCGCCATGCTGCAACGACTATTCCTACTTCACCGCTGCTACTATGATGGGAGGTTCTACAATAAAAGGGAATTATAATAACATTAATAATAACAATAATGCGACTAATACTAATTACAAGGAAGTAATGGAAGATCTGCAGGGGATTAATAATAATAATAATAATAATAATAATAATAATGGGAATGGGTTTGAAGATTGCTTTGGAGGGCTTGATACTCTGCCGGAAGTAACTGGATTCAAGTTCCCTCTCTTTGACTATTTCAGCAACAATGATAGAACGTGA 1287 42.58 MDDHHNPHHHHHHDLPPFPSAAAILHSPPPPPQNSCYLPPILSQTCLGFSSSAPQSYFYSNPPPLHEQLPSHFPPSSTFLTYGFNEPTNSLFPKDEGRRAMDAWSTKVARTNRRLARQRTLTLTRTTSSSSSAAYNGCNNDEYSKGLTITHFPNTDPSHNNRNLFTFCTPDNKILRMLLKKELKNSDVGSLGRIVLPKREAEENLPFLTDKEGIQIVVRDVNSIRKWTMKYKYWANNRSRMYVLENTGEFVRQNGLLMGDSMTLYEDDCKNLYVAVEKGENHSRMEENYKQQQQQQQQQCGNLSNMEIKDEEEDASLALLIEELKHKADDDPHAPPCCNDYSYFTAATMMGGSTIKGNYNNINNNNNATNTNYKEVMEDLQGINNNNNNNNNNNGNGFEDCFGGLDTLPEVTGFKFPLFDYFSNNDRT 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34845907 34849527 - CcPI632755_04g020930.1 Cco04g2093 177318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g2093 428 SMART B3_2 179 280 IPR003340 GO:0003677(InterPro)
Cco04g2093 428 SUPERFAMILY DNA-binding pseudobarrel domain 178 276 IPR015300 -
Cco04g2093 428 CDD B3_DNA 178 274 IPR003340 GO:0003677(InterPro)
Cco04g2093 428 MobiDBLite consensus disorder prediction 1 16 - -
Cco04g2093 428 Gene3D - 168 293 IPR015300 -
Cco04g2093 428 Pfam B3 DNA binding domain 181 276 IPR003340 GO:0003677(InterPro)
Cco04g2093 428 Coils Coil 373 393 - -
Cco04g2093 428 ProSiteProfiles B3 DNA-binding domain profile. 179 280 IPR003340 GO:0003677(InterPro)
Cco04g2093 428 MobiDBLite consensus disorder prediction 1 30 - -
Cco04g2093 428 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 115 306 IPR044800 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g2093 Cco-Chr4:34845907 Cco09g0909 Cco-Chr9:8540643 2.50E-28 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59141 PF02362 B3 3.70E-16 CL0405 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g2093 K09287 - csv:105436043 512.301