Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g2098 ATGGCTCTGAATCTCAGACTCCATACACTCATATTCCTTCTCCTTCTCTTCTCCTTCTGTACTCCATCATTTTCAGATTCAATTCCATCTCCCAATTCCCAATGCGAAGCTCAGCTGCAACAAGGCTGCCATGACAGTGCCAAGGCCCTCAAACTCAAGCTCATCGCCATCGCTTCCATTTTAGTCGCCAGCATGATCGGCGTTTGTCTTCCCCTCTTCTCCCGCGCCGTGCCGGTGCTTCAACCAGAGAGAAAGCCCTTCGCAATCGTTAAGGCATTTGCCTCCGGTGTGATTCTAGCCACTGGATATATGCACGTTCTCCCCGATTCCTTCGATTGCTTGAGATCCCCCTGTTTGCCAGAGAATCCATGGCGGAAATTCCCTTTCTCAACATTCATAGCAATGCTTTCCGCTGTTATGACTCTAATGTTGGACTCGTTTTCAATGAGTCGCTACAATAAAAAGTTGATGCAGGATCAAGAAGCCGCAGACGAGGAGGAGAAGAACGAGGATCGCAAGGAAATCAGTGACAATTTTGGGAAAGAAGAAGGAATAATCGAGAAAAAACTTGGTTCGCAATTGCTACGGTACCGTGTTGTTGCTCAGTTATTAGAAGCGGGGATCGTTGTGCATTCGGTGGTGATAGGGCTTTCAATGGGGGCTTCAGATAATCCGTGTACCATAAGACCGCTCATCGCTGCTCTGTGCTTTCATCAGCTGTTTGAAGGGATGGGGCTTGGAGGGTGCATTTTGCAGGCGGAATATAGGTTGAAGATGAAGGCGATAATGGTGTTTTTCTTCTCGGTTACAACGCCGTTTGGAATAGCATTGGGGATTGGGTTGTCGAATGTGTACAGTGAGAACAGTCCCACGGCTCTTATAGTTGTGGGAATTTTGAATGCTTTATCTGCTGGGTTGTTGAATTATATGGCATTGGTTGATTTGTTGGCGCATGATTTCATGGGGCCTAATTTGCAAGCCAATATCAAGCTGCAAATATGGGCTTATGTTGCTGTTTTGTTGGGCGTTGGTGGCATGTCATTGATGGCAAAATGGGCTTAG 1062 46.89 MALNLRLHTLIFLLLLFSFCTPSFSDSIPSPNSQCEAQLQQGCHDSAKALKLKLIAIASILVASMIGVCLPLFSRAVPVLQPERKPFAIVKAFASGVILATGYMHVLPDSFDCLRSPCLPENPWRKFPFSTFIAMLSAVMTLMLDSFSMSRYNKKLMQDQEAADEEEKNEDRKEISDNFGKEEGIIEKKLGSQLLRYRVVAQLLEAGIVVHSVVIGLSMGASDNPCTIRPLIAALCFHQLFEGMGLGGCILQAEYRLKMKAIMVFFFSVTTPFGIALGIGLSNVYSENSPTALIVVGILNALSAGLLNYMALVDLLAHDFMGPNLQANIKLQIWAYVAVLLGVGGMSLMAKWA 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34889891 34890952 - CcPI632755_04g020980.1 Cco04g2098 177323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g2098 353 Pfam ZIP Zinc transporter 50 350 IPR003689 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
Cco04g2098 353 NCBIfam ZIP zinc/iron transport family 35 353 IPR004698 GO:0005385(InterPro)|GO:0016020(InterPro)|GO:0071577(InterPro)
Cco04g2098 353 PANTHER ZINC/IRON TRANSPORTER 47 352 - GO:0005385(PANTHER)|GO:0005886(PANTHER)|GO:0016020(PANTHER)|GO:0071577(PANTHER)
Cco04g2098 353 Coils Coil 149 169 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0968 Cco-Chr1:11353523 Cco04g2098 Cco-Chr4:34889891 4.90E-107 dispersed
Cco04g2098 Cco-Chr4:34889891 Cco11g1732 Cco-Chr11:30172907 9.70E-79 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g2098 K14709 - csv:101204028 548.125