Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g2113 ATGCCTTTATGGCCCTTCCTCTTCCTCTTCTGTTTCCCTCTGTTTTCCTTCTCCCTCAACCAAGAGGGTTATGTTCTCTACACCTTTAAGCGCTCCGTCGAGGATCGTAACAATGTCTTCTCCACTTGGCACGAAGCCGACCCCGATCCCTGTTCATGGGATGGCATCACCTGCGACGCCCATCATCACGTTATTTCTGTTGATCTCTCTAGCTCTCGAATTTCTGCTTCTTTCCCTCTTCAACTCTGTAAGCTTCCGCATCTCCTCTACCTTTCTCTTTACAACAATACCTTCCATTCCCTTCTTCCCGCTGGGATTTCCAATTGTAGCAGCCTCGAGTTTCTTGACCTTAGTCAAAATCTCCTCACCGGTCCTCTGCCTCCCTCCATTGCTGATTTGCCCAATATCCGATACTTGGATTTGTCTGGCAACAATTTCTCCGGCGAAATACCACCCTCCTTCGGTCGGTTTCGGGAACTTGAGGCGTTTTCAATTGTTTTGAATCTTGTGAGTGGTACAATTCCTCCGTTTCTTGGTAACATTACTACTCTTAGGATGTTGAATATGTCTTACAACTCGTTTTCGCCCGGAAGAATCCCGCCGGAGCTGGGTAGTCTGGTGAATCTTGAGGTTCTTTGGTTGACGGCTTGTAACTTAGTGGGGGAGATTCCTGAGTCGCTGATAGGTCTGGAGCAACTTGTTCTTCTAGATTTGAGCATTAACAATCTTACTGGGCCGTTCCCGCGGGCGCTGACGGAGTTAACCCACGTGACCCAGATTGAGTTATTTGGGAATAAGTTAACCGGCGTGTTACCGAATGAGTTTTCCAAACTCAAGTCGCTGCGGTTGTTCGACATCTCGATGAATAATCTCGCTGGGCCAATTCCGGGTAGCTTGTTTGAGTTGCCGCTTGAAAGTCTTAATGCGTTTGAGAATAATTTCGAGGGGAGCTTGCCGGAAAGCATAGGGGAGTCGAGGACTTTGAGAGAGATAAAGCTATTTGCGAACAGATTCACAGGGTCGTTACCAACACATTTGGGGAAATATTCACCTCTAGAATCGTTGGACATTTCGGACAACTTCTTTTCCGGCAGGCTCCCCGAGAACTTGTGTGAGAAGGGGGCATTGATAGAGATAATGTTGATCAACAACCTGTTTTCCGGCGAACTCCCGTCGAGTCTTGGTAATTGTCAGAGTCTGACCAGGATGCGATTAGGGAACAACAATTTTACGGGTTCTGTACCAGAAAATGTATGGGGACTTTCAGATGTTGCTCTTATGGAACTTGCAAACAACTCCTTCTCTGGCCCAATCTCAAAGAAAATAGCCAACGCCAAGATGCTGAATTTGCTTCTTATTTCTAATAACAATTTCTCCGGAACAATTCCAGAGGAGATTGGTTCTTTGGAGAATATGGTAGAGTTTTCCGCCGACCATAACAAGTTCATAGGAATTATCCCTGAAAGCCTTACAAAAATGGATCGACTTGCTAAGTTAGATCTTCAAAACAACAAACTTTCGGGTTTGCTCGACTACAGGCTTGATGCCTGGGAGAGGCTGAATGAGCTCAATCTGGCCAATAATAACTTCTCTGGGCCAATTCCCCCGGAAATTGCTAGCTTGCCAGTGCTTAATTACCTCGATCTTTCAGGCAATCAATTTTCTGGGGAAATCCCAAATGGGTTACAGAATTTGAACCTCAATGTTCTGAATCTGTCATACAACCAATTAACTGGGACACTTCCTTCCTATTTCGAGAGATCAATGTACAAAAATAGCTTTCTAGGCAATCCTGATTTATGTAGGGAGGAAAACGATGCGTGTCATACAGTTCAGTCTACAAGAGATGGAGGAGGAGGAGGAGGAGGAGGTTGTGATGAGGGAGGAGGTTGCATTTGGCTGCTGCGATCCGTCTTTGTGTTTGCAGGTTTAATTTTCTTTGTGGGGGTGGTTCTATTCCACGTCAAGTACAGGACATTCGTCAAGGCAAGAAGTCTCAACATCATATCAGAATGGACAATGATATCGTTCCAAAAGCTCTCTTTTGGTGAGGACGAGATTGTGGGTTCCCTAGATGAACACAATGTGATAGGCAGTGGAGGCTCTGGCCTAGTTTACAAGGTTGCTCTCGCCAATGGCGAAACCATTGCAGTTAAGAAACTTTGGCCCGAGCTGCCCAATGACTGCCCGAGCATCGATCTGGAGAAAAATTGGACTGAAATTAATGCTTTTGATGCAGAAGTGAAGACTTTGGGTGAAATCAGGCACAAAAACATAGTGAAACTTTTGTGTTGTTGTACCAATGGAGACTGCAAGCTTTTGGTCTTTGAATACATGCCTAATGGGAGCTTAGGTGATATGCTTCATGGTAGTAGAAGTGAGTTATTGGATTGGCCAACACGATACAAGATAGCCTTGGATGCTGCTGAGGGGCTTTCTTATCTTCATCATGATTGTGTTCCTCCAATTGTACACAGAGATGTCAAGTCCAATAACATTTTGTTGGATGCTGAATTCGGAGCTAAGATAGCAGATTTTGGAGTAGCTATGGCTGTCGATATATCCCAGGGTAAATCCATGTCAGTGATTGCTGGTTCTTGTGGCTATATTGCCCCAGAGTATGCTTATACATTGAAAGTGAACGAGAAGAGCGACATCTTTAGCTACGGGATGGTAATCCTTGAATTGGTAACGGGGAAGCGGCCGATTGACTCCGAGTTCGAAGAAAACGATCTGGTGAAATGGGTATGCACCACTTTAGAAGAAGAAGGCGTCAACCATATTCTAGACCCCAAATTGGATTCGTGTCACCAGGAGGAAATGTTGAAGGTCCTCAACATTGGCCTCCTATGCAGCAGTCCTCTACCTATCAACCGCCCATCCATGAGACGAGTGGTTACAATGTTGTTAGAAGTTCGCACGGATAGCAATTCGAAGATTGGAAGGAGAAAGGGAAGATTGACACCATATTATTTCGAGGATGTTTTGGATAGTGGAAATGTGGTATAG 3009 45.13 MPLWPFLFLFCFPLFSFSLNQEGYVLYTFKRSVEDRNNVFSTWHEADPDPCSWDGITCDAHHHVISVDLSSSRISASFPLQLCKLPHLLYLSLYNNTFHSLLPAGISNCSSLEFLDLSQNLLTGPLPPSIADLPNIRYLDLSGNNFSGEIPPSFGRFRELEAFSIVLNLVSGTIPPFLGNITTLRMLNMSYNSFSPGRIPPELGSLVNLEVLWLTACNLVGEIPESLIGLEQLVLLDLSINNLTGPFPRALTELTHVTQIELFGNKLTGVLPNEFSKLKSLRLFDISMNNLAGPIPGSLFELPLESLNAFENNFEGSLPESIGESRTLREIKLFANRFTGSLPTHLGKYSPLESLDISDNFFSGRLPENLCEKGALIEIMLINNLFSGELPSSLGNCQSLTRMRLGNNNFTGSVPENVWGLSDVALMELANNSFSGPISKKIANAKMLNLLLISNNNFSGTIPEEIGSLENMVEFSADHNKFIGIIPESLTKMDRLAKLDLQNNKLSGLLDYRLDAWERLNELNLANNNFSGPIPPEIASLPVLNYLDLSGNQFSGEIPNGLQNLNLNVLNLSYNQLTGTLPSYFERSMYKNSFLGNPDLCREENDACHTVQSTRDGGGGGGGGCDEGGGCIWLLRSVFVFAGLIFFVGVVLFHVKYRTFVKARSLNIISEWTMISFQKLSFGEDEIVGSLDEHNVIGSGGSGLVYKVALANGETIAVKKLWPELPNDCPSIDLEKNWTEINAFDAEVKTLGEIRHKNIVKLLCCCTNGDCKLLVFEYMPNGSLGDMLHGSRSELLDWPTRYKIALDAAEGLSYLHHDCVPPIVHRDVKSNNILLDAEFGAKIADFGVAMAVDISQGKSMSVIAGSCGYIAPEYAYTLKVNEKSDIFSYGMVILELVTGKRPIDSEFEENDLVKWVCTTLEEEGVNHILDPKLDSCHQEEMLKVLNIGLLCSSPLPINRPSMRRVVTMLLEVRTDSNSKIGRRKGRLTPYYFEDVLDSGNVV 1002
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35000119 35003312 + CcPI632755_04g021130.1 Cco04g2113 177338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g2113 1002 Gene3D Ribonuclease Inhibitor 171 256 IPR032675 -
Cco04g2113 1002 ProSitePatterns Protein kinases ATP-binding region signature. 697 720 IPR017441 GO:0005524(InterPro)
Cco04g2113 1002 Pfam Leucine Rich Repeat 448 469 IPR001611 GO:0005515(InterPro)
Cco04g2113 1002 Pfam Leucine Rich Repeat 208 229 IPR001611 GO:0005515(InterPro)
Cco04g2113 1002 Pfam Leucine Rich Repeat 352 371 IPR001611 GO:0005515(InterPro)
Cco04g2113 1002 Pfam Leucine Rich Repeat 566 586 IPR001611 GO:0005515(InterPro)
Cco04g2113 1002 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 179 271 - -
Cco04g2113 1002 Pfam Leucine rich repeat N-terminal domain 19 59 IPR013210 -
Cco04g2113 1002 Gene3D Phosphorylase Kinase; domain 1 673 778 - -
Cco04g2113 1002 Gene3D Ribonuclease Inhibitor 21 170 IPR032675 -
Cco04g2113 1002 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 14 972 IPR050647 -
Cco04g2113 1002 SUPERFAMILY Protein kinase-like (PK-like) 686 969 IPR011009 -
Cco04g2113 1002 ProSiteProfiles Protein kinase domain profile. 691 970 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g2113 1002 Gene3D Ribonuclease Inhibitor 262 612 IPR032675 -
Cco04g2113 1002 FunFam Receptor-like protein kinase HSL1 303 610 - -
Cco04g2113 1002 SUPERFAMILY L domain-like 304 604 - -
Cco04g2113 1002 Pfam Protein kinase domain 693 945 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g2113 1002 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 779 985 - -
Cco04g2113 1002 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 19 178 - -
Cco04g2113 1002 SUPERFAMILY L domain-like 42 302 - -
Cco04g2113 1002 Pfam Leucine rich repeat 86 146 IPR001611 GO:0005515(InterPro)
Cco04g2113 1002 Pfam Leucine rich repeat 495 554 IPR001611 GO:0005515(InterPro)
Cco04g2113 1002 ProSitePatterns Serine/Threonine protein kinases active-site signature. 823 835 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g2113 1002 SMART LRR_typ_2 493 516 IPR003591 -
Cco04g2113 1002 SMART LRR_typ_2 254 277 IPR003591 -
Cco04g2113 1002 SMART LRR_typ_2 206 230 IPR003591 -
Cco04g2113 1002 SMART LRR_typ_2 133 157 IPR003591 -
Cco04g2113 1002 SMART LRR_typ_2 85 109 IPR003591 -
Cco04g2113 1002 SMART LRR_typ_2 541 564 IPR003591 -
Cco04g2113 1002 SMART LRR_typ_2 278 302 IPR003591 -
Cco04g2113 1002 SMART serkin_6 691 991 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g2113 1002 Gene3D Transferase(Phosphotransferase) domain 1 779 988 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0255 Cco-Chr2:2367047 Cco04g2113 Cco-Chr4:35000119 9.40E-132 dispersed
Cco04g2113 Cco-Chr4:35000119 Cco10g0760 Cco-Chr10:11967358 2.60E-89 dispersed
Cco11g1542 Cco-Chr11:28315101 Cco04g2113 Cco-Chr4:35000119 3.10E-82 dispersed
Cco03g1670 Cco-Chr3:31338810 Cco04g2113 Cco-Chr4:35000119 5.30E-74 transposed
Cco03g0651 Cco-Chr3:6626657 Cco04g2113 Cco-Chr4:35000119 2.00E-153 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86794 PF00069 Pkinase 3.00E-41 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g2113 - - - 0.0