Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g2119 ATGGGTGCTCTCATCGATCTCAATACTACTGAAGAAGATGAATCTCCCTCGTCTGCTGGTTCCTCTGTTTCTTCTTCCTCCGCTTCTGCTTTAACCTCCTCTCCTTCACCTTCTGTTACTTCCTCAATTTGCTTGGAGCTATGGCATGCTTGTGCTGGACCTCTCACCTCTTTGCCCAAGAAAGGGAGTTTGGTTGTGTATTTGCCGCAGGGTCACTTCGAGCTGATTCAAGAATTTCCGGCTACGCCTTATGATCTCCCTCCCCACATCCTCTGTCGCGTCATTGATGTTCAGCTTCATGCTGAAGCTGGGAGTGACGAGGTTTATGCTCAGGTTTCTTTGTTTCCTGAAAACGAGAAAATGGAGCACAAGATGCAGGAAGAGATGAACAATGACAGTGAGGAGGAGGATGTTGAAGAAGGTGAGAAGACTACAACACCCCACATGTTCTGCAAGACCCTTACCGCTTCTGACACCAGTACTCATGGAGGCTTTTCCGTCCCTAGACGTGCAGCTGAGGATTGCTTCCCACCATTGGATTATAATCAACAGAGGCCTTCGCAAGAGCTCGTAGCAAAGGATCTCCTTGGGCTAAAGTGGAAGTTCAGGCACATATATCGTGGGCAGCCTAGAAGGCATTTGCTAACCACTGGATGGAGTGCTTTCGTGAACAAGAAAAGGCTTGTTTCTGGAGATGCAGTGCTTTTTCTTAGGGGCAACGATGGTGAATTAAGACTGGGAATTCGAAGAGCTGCACAGCTTAAAAATGGTTCTGCCTTTTCCAATATTTGCAGTCAGCAGCTCAACTCTAGTAGTGTCATGGATGTGGTTAGTGCGATATCTACAAAAAGTTCCTTTAGTGTATACTACAATCCAAGGGCTACCTCTTCACAGTTTGTCTTACCCTTTCACAAGTTCTTGAAGAGCATTAACCATTCTTTCTCTGTTGGAATGAGGTTTAGGCTGAGTTTTGAAACCGAAGATGCTGCAGATCGAAGACATTCTGGACATATAACTGGAGTTGGCGATGTGGATCCTATCAGATGGCCAGGATCAAGGTGGAGGTCCCTTATGGTGAGGTGGGATGATGGCGAAACTAACAGGCATGGCAGGGTTTCCCCTTGGGAGATTGAGCCCTCTGGTTCTGTCTCTTTGTCTAGCAACTTGGTTCCACCTGGTCTGAAAAGAACCAGGATTGGGCTCTCTTCCACAAAACTAGAGTTTCCAGTTCCAAATGGGATTGGAGCATCAGACTTTGGGGAATCTTTAAGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTTTAGGTTACAGTACTCCCATTGACGGTGAGGAAAAAAATCGTAATCCAGCCGAAAAGAGGAGATTGTTTCCTGGTTTACATGGTTCTGGGATAGCTCTGATGAGAAATGGTCCAAGAATCCCACTTATTAACTCCGAAACTTCCTCCCGGGGTATCGTGTTTGATGAATCCTTTCAATACCATAAGGTCTTGCAAGGTCAAGAAATATTTCCAAGTCCCTTTTATGGTAGGTCCATGGCCATCAATGAAGTTAAGGCAAGTGGTGGTTGTGGCCCTGTCGATGGCATTCGATTATCTAGGACTAAAGATGGATGGCCCATGACAATGCAATGTGAAAATTTCCTCACACGGTCTTCCAATCCTTCTGTACAAGTCTCATCACCATCTTCTGTATTAATGTTTCAGCAGTCAATGGTTCCTGTTCAAAGCTTTAATTCACATAACCGTGTTGCAGAACAGAGGATTATGAACAAAAGTACATCCCATAATTCTGGGACAGCATTTATCACTAACCATAGCTCGAATACCGAAGTCAACCCACAAGGCATGTGTCCCACTTCATTGGGCGAGCGGAATCACCTCGGCCTATCACATCCTTCAACAACATCAGCACCAGCAGCATTTACAGGCAGTAAAGATCTGTCTTCAACTTGCAAACCTGGCTGTAGATTGTTTGGTTTTTCATTGACAGAGGAAAAGAATGTTGGGAATACAGACAAGGCTTCTCCAGCAACAACTTCCAATAATGCAGGAACAACCACTGTTTTGTCCAATGTTGGAGTACAATGTCCTTTGAAGTCTCCTCTCATGAGCAAGGTGGTTGGAAGCAACTGTACCAAAGGGGCTTTCCAGTACCACTTTGCAAATTACAGTACCTACTACTGA 2187 45.27 MGALIDLNTTEEDESPSSAGSSVSSSSASALTSSPSPSVTSSICLELWHACAGPLTSLPKKGSLVVYLPQGHFELIQEFPATPYDLPPHILCRVIDVQLHAEAGSDEVYAQVSLFPENEKMEHKMQEEMNNDSEEEDVEEGEKTTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYNQQRPSQELVAKDLLGLKWKFRHIYRGQPRRHLLTTGWSAFVNKKRLVSGDAVLFLRGNDGELRLGIRRAAQLKNGSAFSNICSQQLNSSSVMDVVSAISTKSSFSVYYNPRATSSQFVLPFHKFLKSINHSFSVGMRFRLSFETEDAADRRHSGHITGVGDVDPIRWPGSRWRSLMVRWDDGETNRHGRVSPWEIEPSGSVSLSSNLVPPGLKRTRIGLSSTKLEFPVPNGIGASDFGESLRFQKVLQGQEILGYSTPIDGEEKNRNPAEKRRLFPGLHGSGIALMRNGPRIPLINSETSSRGIVFDESFQYHKVLQGQEIFPSPFYGRSMAINEVKASGGCGPVDGIRLSRTKDGWPMTMQCENFLTRSSNPSVQVSSPSSVLMFQQSMVPVQSFNSHNRVAEQRIMNKSTSHNSGTAFITNHSSNTEVNPQGMCPTSLGERNHLGLSHPSTTSAPAAFTGSKDLSSTCKPGCRLFGFSLTEEKNVGNTDKASPATTSNNAGTTTVLSNVGVQCPLKSPLMSKVVGSNCTKGAFQYHFANYSTYY 728
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 35043708 35048077 - CcPI632755_04g021190.1 Cco04g2119 177344
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco04g2119 728 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 42 680 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cco04g2119 728 MobiDBLite consensus disorder prediction 1 36 - -
Cco04g2119 728 FunFam Auxin response factor 148 252 - -
Cco04g2119 728 MobiDBLite consensus disorder prediction 10 36 - -
Cco04g2119 728 Gene3D - 148 252 IPR015300 -
Cco04g2119 728 SUPERFAMILY DNA-binding pseudobarrel domain 145 260 IPR015300 -
Cco04g2119 728 Gene3D - 313 387 - -
Cco04g2119 728 CDD B3_DNA 148 250 IPR003340 GO:0003677(InterPro)
Cco04g2119 728 ProSiteProfiles B3 DNA-binding domain profile. 150 252 IPR003340 GO:0003677(InterPro)
Cco04g2119 728 FunFam Auxin response factor 313 384 - -
Cco04g2119 728 Pfam Auxin response factor 277 357 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cco04g2119 728 Pfam B3 DNA binding domain 150 251 IPR003340 GO:0003677(InterPro)
Cco04g2119 728 SMART B3_2 150 252 IPR003340 GO:0003677(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g2119 Cco-Chr4:35043708 Cco06g2035 Cco-Chr6:30315379 2.50E-97 dispersed
Cco04g2119 Cco-Chr4:35043708 Cco02g2251 Cco-Chr2:35067857 3.60E-128 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59149 PF02362 B3 1.60E-21 CL0405 Cco TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g2119 K14486 - csv:101220018 1288.86