Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g2121 ATGGTACTCCCGTTATTGAAGCTCGGAACCCTGGCGTTGAAAACTCTGAGCAAGCCGCTCGGTAATAGGCTCAAGAAACAAGCTGCGTTGCACCCCAGATTTAGGCAGTTCATCATTAATGTGGCCCAGATTAACCATCGGATGTCAACGCAAATGCAAAGACGCATATACAGTCATGCAACTGATGTAGAAATTCGCCCTCTGGATGAGGAGAAAGCAGTTCAGGCTGCTGTTGACCTGATTGGCGAGGTTTTTGTCTTCTCGGTAGCCGGAGCAATAGTGATATTTGAGGTTCAAAGAAGTGCTAGGTCAGAAGCCAGAAAAGAAGAACTACGCAGACAAGAAATGGAGGCACTGAGGCAAAGGGACGAAAGCTTATCGACAGAAATGGAACTTTTGAAGCTTAAACTTGTAGAATTGGAACAACAAGCCAAAGGACGAGGTGTCCTTGCACTTTCTTGCTCCATATTGTGGGAGGTCCAAGCCCTGTTCAGAACTAGGGCTTGCCATTCACCTGCTACCCATTTTCCTGCGAGTTCCTCGGAGAAAAGTTTGAGTTGTGTAATGGGAAAGCATTCAAAGACCAGTTGCAAGTCGGCTTCCCACAAGCTATTTAAGGATAAGGCAAAGAACCGGGTTGATGATCTGCAAAGCATATTTGTAGATTTGCAGTATGCAAGGAAAGAGAGCCGCACGGTTGATGTGACAGTTCTCGAGGAACAAGTCCATCAGATGCTTCGTGAGTGGAAAGCTGAGCTGAACGAGCCCTCTCCAGCATCCTCTTTGCAACAAGGTGGAAGTCTTGGGTCATTTTCATCGGACATTTGTCGATTGTTGCAACTTTGCGAGGAGGATGATGATGCGTCTAGTCCATTAGCTGCTCCTAAGCCCGAACCTAATGAACAAAATTTGCAGGTTGGAGATACTATGGCACTGCAAGAGGGATATAATGTGAATCATGGACACCAAGAACCAAGCTTCCCTCTGGTTGATCAATGCAAGAACTCCCCTTCAGGAGTTCATGGTATGGCTATGAATAACTTGGAAGGACCTACACAATTGGAGTGTCATCAGTTTGATTTACATCAAGGCATTGAGCACAACTTCTACTCTATTCTTAATGGTAGAGGATTATGTGGGGAGGGTGCAATTCCTCATGTTTCTAGCTACTGCCCCAGCATTTGCCCTCCACCTGCTGCTTTTTTGGGCCCAAAATGTGCGCTTTGGGATTGCCCACGACCTGCCCAAGGGATGGATTGGTGTGAGGACTACTGTAGCAGCTTTCATGCTGCCTTAGCATTGAATGAAGGCCCTCCTGGAATGGGTCCAGTTTTACGACCTGGTGGAATTGGTCTGAAGGATGGTTTGCTTTTTGCTGCTCTTAGTGCAAAGGCACAAGGGAAAGATGTTGGTATCCCTGAATGTGAGGGAGCTGCCACGGCAAAATCCCCATGGAATGCTCCTGAGCTTTTTGATCTGTCAATATTGGAGGGTGAGATGATTAGGGAGTGGCTTTTCTTTGATAAGCCTCGTAGAGCATTTGAGAGTGGGAATAGAAAGCAGAGGTCACTGCCTGATTACAGTGGACGTGGTTGGCACGAGTCAAGAAAGCAAGTGATGAATGAGTTTGGAGGGCTGAAAAGATCTTATTACATGGATCCTCAGCCATTGAACCACTTTGAGTGGCATCTTTATGAATATGAAATTAATAAGTATGATGCCTGCGCTTTGTATAGATTGGAGCTGAAACTTGTCGATGGGAAAAAAGGTTCTAAGGCAAAGGTATCTAATGATTCAGTTGCTGATTTACAGAGGCAAATGGGGAGATTGACCGCTGAATTTCCTGATAATAAACGCTTTGTTAAGGGGAGGACCAGAATTAACACAAAAGTTGGTCTTGGAAATGTTTACCCCTCAGCAAATAGAGTCATGCCGCCCAATGGAACATATGACTATATGCTTCATGCACAATATGATTACCTTGTGGAGAATTTGAGTGAATATTACCTTACATAG 2016 45.29 MVLPLLKLGTLALKTLSKPLGNRLKKQAALHPRFRQFIINVAQINHRMSTQMQRRIYSHATDVEIRPLDEEKAVQAAVDLIGEVFVFSVAGAIVIFEVQRSARSEARKEELRRQEMEALRQRDESLSTEMELLKLKLVELEQQAKGRGVLALSCSILWEVQALFRTRACHSPATHFPASSSEKSLSCVMGKHSKTSCKSASHKLFKDKAKNRVDDLQSIFVDLQYARKESRTVDVTVLEEQVHQMLREWKAELNEPSPASSLQQGGSLGSFSSDICRLLQLCEEDDDASSPLAAPKPEPNEQNLQVGDTMALQEGYNVNHGHQEPSFPLVDQCKNSPSGVHGMAMNNLEGPTQLECHQFDLHQGIEHNFYSILNGRGLCGEGAIPHVSSYCPSICPPPAAFLGPKCALWDCPRPAQGMDWCEDYCSSFHAALALNEGPPGMGPVLRPGGIGLKDGLLFAALSAKAQGKDVGIPECEGAATAKSPWNAPELFDLSILEGEMIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEFGGLKRSYYMDPQPLNHFEWHLYEYEINKYDACALYRLELKLVDGKKGSKAKVSNDSVADLQRQMGRLTAEFPDNKRFVKGRTRINTKVGLGNVYPSANRVMPPNGTYDYMLHAQYDYLVENLSEYYLT 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35065679 35075673 + CcPI632755_04g021210.1 Cco04g2121 177346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g2121 671 PANTHER TRANSCRIPTION FACTOR VOZ1 189 669 IPR039277 GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0043565(PANTHER)|GO:0045893(PANTHER)|GO:0048578(InterPro)|GO:0048578(PANTHER)
Cco04g2121 671 Pfam Optic atrophy 3 protein (OPA3) 6 126 IPR010754 -
Cco04g2121 671 Coils Coil 101 143 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0239 Cco-Chr2:2249381 Cco04g2121 Cco-Chr4:35065679 2.00E-53 dispersed
Cco02g1110 Cco-Chr2:15761534 Cco04g2121 Cco-Chr4:35065679 1.50E-143 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59150 PF07047 OPA3 2.10E-41 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g2121 - - - 0.0