Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g2133 ATGAAAGCCGACCCATTTCTCGATCAAAGAGTTCGTTCCCATGTCGCTGATATAAGCACTTCGTTTGCGAAGATGGGTTCTGGTCGTTGGTTTAAGGCAGTAATTCGCTTAAAGAAAGTGAAAACCTGCAGTTCAAAACAAATTAAGGAGAAATTGGATGATTTGCAAAAAGATTCCCCAAGGTTTAAAAATGGTGGCACCAAAGGGAATAGTAAGTCTCTTGGGATGCCAATTGAAGATGTAGCGGCAGTTCGGATTCAGACAGCATACCGAGCATATCGTGCCAGGAAAAATTTACGTCGCTTGAAAGGGGCCTTCAGACTGCAGAATCTGACTCAAGGCAATTCCGTTAGAAAGCATGCTACATCTACATTAGGTTATCTTCATTCATGGAGCAATATACAGGCTCAAATTAGGGCTCGTCGACTTTGTATGGTGACAGAAGGACGACTAAGACAAAAAAGATTAGAAAATCAACGAAAACTTGAGGCTAAGCTTCATCATATAGAGGTGGAGTGGTGTGGGGGTGCAGACTCCATGGATGGGATTCTTTCGAGGATACATGAGAGAGAAGAAGCGGCGGTTAAGCGCGAGCGTGCTATGGCATATGCATTCTCACATCAGTGGAGAGCAAACTCCAATGAGATGTATGGGTTGGGTAAAGATGAACTTGGTAAAGCTGATTGGGGTTGGAGCTGGAAAGAACGATGGATAGCTGCTCGTCCATGGGAAAGCCGTGTACCATCTCAGTTTGATAGTCCAAAGAAATCTACAATTAGGCAATCAAGCAAAGTCAGTAAGAGAAACTCGCCATCCCCTAAAGCACGAGTTTCAATTAAACCTCCTTCCCCAAATGTGAAATCAACTTCAAAGGCTCGAAGGTTGTCTTATCCAGCAACCGAGAAAACCGAAAAACTGGCTACAGAAGAAAAAGGCGTCAAAGAAAGCAAAGCCAGAGAGAAGAAAATAAAAGATGCAGAAGCCATTTGTTTTCTGTATGTCATTTCTGACGATGTTCATTCAGGGAGTGGTGTGAGCTGGAGGAGAAGGCCAAAGCCCGGCAATTGTTGTAGAAGGCTATCGAAACCATCTCTGTACACTACTCGGATCTCAAAACTTATGGATTCTTCTGCGGACTCTTCTGGGTGCTCAAAAAGACTAGTCGCTTTGGCACAGCAACTCCGCCTTTACAAACCGCCTCTATTGTTGGACGACATAGAGGAGCCAAGCAGTGAGGAGAGCAATGGAAAGGTTGTTTCTCAAGTGGGTTTCCCTGAATCAGCCACCCCAATTTCTCGAGACCCAGAGAGATTCAGACCCAAGAGAGCGGCTGTGTTGATTTGCCTTTTTGAAGGGAATGATGGCGATCTGCGGGTCATTCTCACCAAACGATCCTCGAGGTTGTCTACTCACTCGGGTGAAGTTGCATTGCCTGGAGGAAAAGCAGAGGAAGGAGATGAAGACGATGGGGCGACTGCGACGAGAGAAGCAAAGGAGGAGATTGGCTTGGATCCTTCGCTTGTAAATGTTGTTACTGTTCTCGAACCATTCTTGTCTAAACATCTCCTAAGAGTGGTTCCTGTTATCGGCATTATGAATGAAAGAAATGCATTCAGTCCCAGGCCGAATCCTGCTGAAGTGGATGAAGTATTTGATGCTCCACTTGATATGTTTATTAAGGATGAAAATCGGAGGTCGGAGGAAAGAGAGTGGATGGGATGCAAATACCTTGTTCATTTCTTTGATTACGAAACCGAGAATAAGAAATATGTGATATGGGGTTTAACTGCTGGGATCTTGATAAGGGCTGCATCAATAGTACTCCAAAGCTCACCACCTTTTCTGGAGCAAAACCCTATCTTCAAGGTGGAAGATTCCAAAGATTATTGCACTCATTTGGAGCCAAAAATAAAATTCCTGAATAGAGGAAGACACCAGTATCATGTGCTGAGAAAGTTATCTTTGAGAGTGAATGCTCGGAACAAACTTGCTGCAGTTGCCGGCATATCATCTTCAATGAACGTGATTCATGGCATAGAGAGCTTAAGCAGCCGTCCATTAACAGGGCTGGCAGGTCTACCCGGGTTCACAACTCATTCTATTAGATGA 2109 44.48 MKADPFLDQRVRSHVADISTSFAKMGSGRWFKAVIRLKKVKTCSSKQIKEKLDDLQKDSPRFKNGGTKGNSKSLGMPIEDVAAVRIQTAYRAYRARKNLRRLKGAFRLQNLTQGNSVRKHATSTLGYLHSWSNIQAQIRARRLCMVTEGRLRQKRLENQRKLEAKLHHIEVEWCGGADSMDGILSRIHEREEAAVKRERAMAYAFSHQWRANSNEMYGLGKDELGKADWGWSWKERWIAARPWESRVPSQFDSPKKSTIRQSSKVSKRNSPSPKARVSIKPPSPNVKSTSKARRLSYPATEKTEKLATEEKGVKESKAREKKIKDAEAICFLYVISDDVHSGSGVSWRRRPKPGNCCRRLSKPSLYTTRISKLMDSSADSSGCSKRLVALAQQLRLYKPPLLLDDIEEPSSEESNGKVVSQVGFPESATPISRDPERFRPKRAAVLICLFEGNDGDLRVILTKRSSRLSTHSGEVALPGGKAEEGDEDDGATATREAKEEIGLDPSLVNVVTVLEPFLSKHLLRVVPVIGIMNERNAFSPRPNPAEVDEVFDAPLDMFIKDENRRSEEREWMGCKYLVHFFDYETENKKYVIWGLTAGILIRAASIVLQSSPPFLEQNPIFKVEDSKDYCTHLEPKIKFLNRGRHQYHVLRKLSLRVNARNKLAAVAGISSSMNVIHGIESLSSRPLTGLAGLPGFTTHSIR 702
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35160524 35169296 + CcPI632755_04g021330.1 Cco04g2133 177358

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g2133 702 MobiDBLite consensus disorder prediction 471 498 - -
Cco04g2133 702 Gene3D - 30 127 - -
Cco04g2133 702 CDD CoAse 441 601 IPR045121 GO:0010945(InterPro)
Cco04g2133 702 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 426 605 - -
Cco04g2133 702 MobiDBLite consensus disorder prediction 247 317 - -
Cco04g2133 702 PANTHER NUDIX HYDROLASE 384 622 IPR045121 GO:0010945(InterPro)|GO:0015938(PANTHER)
Cco04g2133 702 Pfam NUDIX domain 441 551 IPR000086 -
Cco04g2133 702 ProSiteProfiles IQ motif profile. 79 107 - -
Cco04g2133 702 ProSiteProfiles Nudix hydrolase domain profile. 440 596 IPR000086 -
Cco04g2133 702 SUPERFAMILY Nudix 438 600 IPR015797 -
Cco04g2133 702 MobiDBLite consensus disorder prediction 297 317 - -
Cco04g2133 702 MobiDBLite consensus disorder prediction 282 296 - -
Cco04g2133 702 FunFam Nudix hydrolase 11 422 605 - -
Cco04g2133 702 MobiDBLite consensus disorder prediction 250 273 - -
Cco04g2133 702 MobiDBLite consensus disorder prediction 480 498 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g2133 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g2133 Cco-Chr4:35160524 Cco09g2240 Cco-Chr9:36699663 2.50E-33 dispersed
Cco07g1069 Cco-Chr7:24212594 Cco04g2133 Cco-Chr4:35160524 6.50E-53 transposed
Cco03g0659 Cco-Chr3:6735131 Cco04g2133 Cco-Chr4:35160524 3.10E-40 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g185 . Blo11g00281 Bda02g00056 . . Bpe01g00878 Bma14g01005 . Cmo13g00638 . . Cma07g00202 . Car07g00167 . . . Bhi03g00322 Tan03g2550 . . Hepe04g1899 . . Cla01g02299 Cam01g2410 Cec04g2057 Cco04g2133 Clacu01g2431 Cmu01g2295 Cre04g1963 . . . . Lsi01g00264 Csa06g03680 Chy12g00109 Cme08g00246 . . . Bda07g00986 . . . . . . Cmo07g00201 Cma13g00615 . Car13g00502 . . Cpe20g00455 Bhi08g02246 . . . . . . Cla03g00737 Cam03g0650 Cec03g0625 Cco03g0659 Clacu03g0783 Cmu03g1380 Cre03g0936 Lsi02g00793 Csa01g02339 Chy02g00251 Cme12g01306
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco09g2240 . 1 479 IQD Protein Family AT3G52290 52.9 4.8e-104 375.2
Cco05g2347 . 1768 1977 IQD Protein Family AT2G26410 51.2 2.0e-43 174.1
Cco03g1216 . 34 441 IQD Protein Family AT3G22190 57.2 1.0e-95 347.4
Cco05g2036 . 1 438 IQD Protein Family AT2G26180 61.6 2.7e-120 429.1
Cco04g2133 . 25 298 IQD Protein Family AT2G33990 52.9 1.2e-62 236.9
Cco07g1069 . 109 292 IQD Protein Family AT2G33990 52.9 1.5e-47 186.8
Cco04g2133 . 80 246 IQD Protein Family AT3G15050 61.7 2.5e-55 212.6
Cco07g1069 . 112 285 IQD Protein Family AT3G15050 61.0 3.0e-53 205.7
Cco01g0795 . 121 473 IQD Protein Family AT5G13460 50.7 3.3e-76 282.7
Cco06g0276 . 1 508 IQD Protein Family AT4G00820 51.5 9.7e-115 411.0
Cco03g1666 . 1 391 IQD Protein Family AT3G16490 50.2 2.0e-64 243.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010466 2 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 2 2 1 32