Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g2133 ATGAAAGCCGACCCATTTCTCGATCAAAGAGTTCGTTCCCATGTCGCTGATATAAGCACTTCGTTTGCGAAGATGGGTTCTGGTCGTTGGTTTAAGGCAGTAATTCGCTTAAAGAAAGTGAAAACCTGCAGTTCAAAACAAATTAAGGAGAAATTGGATGATTTGCAAAAAGATTCCCCAAGGTTTAAAAATGGTGGCACCAAAGGGAATAGTAAGTCTCTTGGGATGCCAATTGAAGATGTAGCGGCAGTTCGGATTCAGACAGCATACCGAGCATATCGTGCCAGGAAAAATTTACGTCGCTTGAAAGGGGCCTTCAGACTGCAGAATCTGACTCAAGGCAATTCCGTTAGAAAGCATGCTACATCTACATTAGGTTATCTTCATTCATGGAGCAATATACAGGCTCAAATTAGGGCTCGTCGACTTTGTATGGTGACAGAAGGACGACTAAGACAAAAAAGATTAGAAAATCAACGAAAACTTGAGGCTAAGCTTCATCATATAGAGGTGGAGTGGTGTGGGGGTGCAGACTCCATGGATGGGATTCTTTCGAGGATACATGAGAGAGAAGAAGCGGCGGTTAAGCGCGAGCGTGCTATGGCATATGCATTCTCACATCAGTGGAGAGCAAACTCCAATGAGATGTATGGGTTGGGTAAAGATGAACTTGGTAAAGCTGATTGGGGTTGGAGCTGGAAAGAACGATGGATAGCTGCTCGTCCATGGGAAAGCCGTGTACCATCTCAGTTTGATAGTCCAAAGAAATCTACAATTAGGCAATCAAGCAAAGTCAGTAAGAGAAACTCGCCATCCCCTAAAGCACGAGTTTCAATTAAACCTCCTTCCCCAAATGTGAAATCAACTTCAAAGGCTCGAAGGTTGTCTTATCCAGCAACCGAGAAAACCGAAAAACTGGCTACAGAAGAAAAAGGCGTCAAAGAAAGCAAAGCCAGAGAGAAGAAAATAAAAGATGCAGAAGCCATTTGTTTTCTGTATGTCATTTCTGACGATGTTCATTCAGGGAGTGGTGTGAGCTGGAGGAGAAGGCCAAAGCCCGGCAATTGTTGTAGAAGGCTATCGAAACCATCTCTGTACACTACTCGGATCTCAAAACTTATGGATTCTTCTGCGGACTCTTCTGGGTGCTCAAAAAGACTAGTCGCTTTGGCACAGCAACTCCGCCTTTACAAACCGCCTCTATTGTTGGACGACATAGAGGAGCCAAGCAGTGAGGAGAGCAATGGAAAGGTTGTTTCTCAAGTGGGTTTCCCTGAATCAGCCACCCCAATTTCTCGAGACCCAGAGAGATTCAGACCCAAGAGAGCGGCTGTGTTGATTTGCCTTTTTGAAGGGAATGATGGCGATCTGCGGGTCATTCTCACCAAACGATCCTCGAGGTTGTCTACTCACTCGGGTGAAGTTGCATTGCCTGGAGGAAAAGCAGAGGAAGGAGATGAAGACGATGGGGCGACTGCGACGAGAGAAGCAAAGGAGGAGATTGGCTTGGATCCTTCGCTTGTAAATGTTGTTACTGTTCTCGAACCATTCTTGTCTAAACATCTCCTAAGAGTGGTTCCTGTTATCGGCATTATGAATGAAAGAAATGCATTCAGTCCCAGGCCGAATCCTGCTGAAGTGGATGAAGTATTTGATGCTCCACTTGATATGTTTATTAAGGATGAAAATCGGAGGTCGGAGGAAAGAGAGTGGATGGGATGCAAATACCTTGTTCATTTCTTTGATTACGAAACCGAGAATAAGAAATATGTGATATGGGGTTTAACTGCTGGGATCTTGATAAGGGCTGCATCAATAGTACTCCAAAGCTCACCACCTTTTCTGGAGCAAAACCCTATCTTCAAGGTGGAAGATTCCAAAGATTATTGCACTCATTTGGAGCCAAAAATAAAATTCCTGAATAGAGGAAGACACCAGTATCATGTGCTGAGAAAGTTATCTTTGAGAGTGAATGCTCGGAACAAACTTGCTGCAGTTGCCGGCATATCATCTTCAATGAACGTGATTCATGGCATAGAGAGCTTAAGCAGCCGTCCATTAACAGGGCTGGCAGGTCTACCCGGGTTCACAACTCATTCTATTAGATGA 2109 44.48 MKADPFLDQRVRSHVADISTSFAKMGSGRWFKAVIRLKKVKTCSSKQIKEKLDDLQKDSPRFKNGGTKGNSKSLGMPIEDVAAVRIQTAYRAYRARKNLRRLKGAFRLQNLTQGNSVRKHATSTLGYLHSWSNIQAQIRARRLCMVTEGRLRQKRLENQRKLEAKLHHIEVEWCGGADSMDGILSRIHEREEAAVKRERAMAYAFSHQWRANSNEMYGLGKDELGKADWGWSWKERWIAARPWESRVPSQFDSPKKSTIRQSSKVSKRNSPSPKARVSIKPPSPNVKSTSKARRLSYPATEKTEKLATEEKGVKESKAREKKIKDAEAICFLYVISDDVHSGSGVSWRRRPKPGNCCRRLSKPSLYTTRISKLMDSSADSSGCSKRLVALAQQLRLYKPPLLLDDIEEPSSEESNGKVVSQVGFPESATPISRDPERFRPKRAAVLICLFEGNDGDLRVILTKRSSRLSTHSGEVALPGGKAEEGDEDDGATATREAKEEIGLDPSLVNVVTVLEPFLSKHLLRVVPVIGIMNERNAFSPRPNPAEVDEVFDAPLDMFIKDENRRSEEREWMGCKYLVHFFDYETENKKYVIWGLTAGILIRAASIVLQSSPPFLEQNPIFKVEDSKDYCTHLEPKIKFLNRGRHQYHVLRKLSLRVNARNKLAAVAGISSSMNVIHGIESLSSRPLTGLAGLPGFTTHSIR 702
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35160524 35169296 + CcPI632755_04g021330.1 Cco04g2133 177358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g2133 702 MobiDBLite consensus disorder prediction 471 498 - -
Cco04g2133 702 Gene3D - 30 127 - -
Cco04g2133 702 CDD CoAse 441 601 IPR045121 GO:0010945(InterPro)
Cco04g2133 702 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 426 605 - -
Cco04g2133 702 MobiDBLite consensus disorder prediction 247 317 - -
Cco04g2133 702 PANTHER NUDIX HYDROLASE 384 622 IPR045121 GO:0010945(InterPro)|GO:0015938(PANTHER)
Cco04g2133 702 Pfam NUDIX domain 441 551 IPR000086 -
Cco04g2133 702 ProSiteProfiles IQ motif profile. 79 107 - -
Cco04g2133 702 ProSiteProfiles Nudix hydrolase domain profile. 440 596 IPR000086 -
Cco04g2133 702 SUPERFAMILY Nudix 438 600 IPR015797 -
Cco04g2133 702 MobiDBLite consensus disorder prediction 297 317 - -
Cco04g2133 702 MobiDBLite consensus disorder prediction 282 296 - -
Cco04g2133 702 FunFam Nudix hydrolase 11 422 605 - -
Cco04g2133 702 MobiDBLite consensus disorder prediction 250 273 - -
Cco04g2133 702 MobiDBLite consensus disorder prediction 480 498 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g2133 Cco-Chr4:35160524 Cco09g2240 Cco-Chr9:36699663 2.50E-33 dispersed
Cco07g1069 Cco-Chr7:24212594 Cco04g2133 Cco-Chr4:35160524 6.50E-53 transposed
Cco03g0659 Cco-Chr3:6735131 Cco04g2133 Cco-Chr4:35160524 3.10E-40 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g2133 - - - 0.0