Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g2154 ATGGCTGAGGTTCATAGTAGCAACACGGATGGAATTAAGCTTTTTGGCACTATGATTCATTTACAGACAAGAAAAATGAAGGAGGAACCGGAGAAAGGCGGCGGCGAAGGTGATGAAACAGAGATGAAGAGGCCAGAAAAAATTATTCCATGCCCGAGATGTAAGAGTATGGACACCAAATTCTGTTACTTCAACAATTACAATGTTAATCAGCCTAGACATTTCTGCAAGGGTTGCCAAAGGTACTGGACGGCCGGTGGGGCGCTCCGGAACGTACCCATCGGAGCTGGCCGCCGGAGAACCAAGCCGCCGCCTAATTGCCGGACCCTTTCCGGAGAGCTGCCAGAGGATTATGGGCAGCTTTACGATGCGGCTTCTGGGATTATTCATCAGCTTGAATTAGATGCGGTGGAAGGGTGGCGTCTCACGTTGGCGGAACAGGATTTTAGCTCGGTTTTTCCTTTCAAACGCCGGAAGATTATCGGTCAACACGGTCAAACGTCTTAA 507 49.31 MAEVHSSNTDGIKLFGTMIHLQTRKMKEEPEKGGGEGDETEMKRPEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRTKPPPNCRTLSGELPEDYGQLYDAASGIIHQLELDAVEGWRLTLAEQDFSSVFPFKRRKIIGQHGQTS 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35298417 35298923 - CcPI632755_04g021540.1 Cco04g2154 177379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g2154 168 MobiDBLite consensus disorder prediction 21 44 - -
Cco04g2154 168 ProSiteProfiles Zinc finger Dof-type profile. 49 103 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco04g2154 168 PANTHER CYCLIC DOF FACTOR 2 27 110 IPR045174 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g2154 168 MobiDBLite consensus disorder prediction 22 44 - -
Cco04g2154 168 Pfam Dof domain, zinc finger 47 102 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco04g2154 168 ProSitePatterns Zinc finger Dof-type signature. 51 87 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g2154 Cco-Chr4:35298417 Cco10g1583 Cco-Chr10:29078686 4.70E-31 dispersed
Cco03g0672 Cco-Chr3:6850220 Cco04g2154 Cco-Chr4:35298417 2.60E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59154 PF02701 zf-Dof 1.60E-31 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g2154 - - - 0.0