Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g2163 ATGGCCGAACGGCCGGACCCTGACAAGAAGACCGAAACCACCAGGAAGGACATGCCCGCGCTTCTTTTGGGCCGATACGAGATCGGGAAGCTCCTTGGCCATGGGACCTTTGCTAAGGTCTACCATGCCCGAAACATCAAGACCAACGAAAGCGTCGCCATTAAAGTCATCGACAAGGAGAAGATCCTCAAGGGTGGTTTAATCGCCCACATCAAACGCGAGATCTCAATCCTCCGCCGTGTTCGACACCCCAATATTGTGCAACTCTTCGAGGTCATGGCCACCAAGGCCAAGATCTACTTCGTTATGGAATATGTCCGCGGCGGCGAGCTTTTCAAGAAGGTTTCCAAGGGCCGATTGAAGGAAGAGGTTGCACGAAAGTACTTTCAGCAATTAATCTCTGCCGTTGCTTTTTGCCACGCGCGTGGTGTTTATCATCGGGACCTTAAACCGGAGAATTTGCTGCTCGATGAGAATGGGAATCTTAAGGTCTCCGATTTTGGCCTCAGCGCCGTCTCCGATCAAATTCGACAAGATGGGTTGTTTCATACTTTTTGTGGTACGCCGGCGTATGTGGCTCCGGAGGTTTTGGCCCGGAAAGGGTATGAGGCTGCGAAGGTCGATATTTGGTCATGTGGGGTTATTCTGTTTGTTCTGATGGCGGGGTATTTACCCTTCCACGACCAAAACATTATGGCAATGTATAAGAAGATTTACAAGGGGGAGTTTCGGTGTCCGAGATGGTTCTCGCCGGAGCTAATTCGACTCCTAACTCGTCTTCTAGATACAAATCCCGAAACCCGTTTCACAATTCCTGAAATCATGGAGAACAAATGGTTCAAAAAGGGGTATAAACATATCAAATTCTACATCGAAGACGATAAGGTCTGCAGCGTTGAGGACGGTAACGATGATGTCGATTCCTTGTCGGATCAATCACAATCGGAATCGGATTCTGAAATTATTGAGACCAGAAGAAAGATTACCTCACTCCCAAGACCCGCGAGTTTGAATGCATTTGATATAATTTCGTTTTCGCCCGGATTTGATCTTTCTGGGTTGTTTGAGGATGGAGGGGAAGAGGCAAGATTTGTGTCCAGTGCTCCGGTGTCGAAGATTATATCGAAATTAGAGGAGATTGCAAAATTGGTGAGTTTTACTGTGAGGAAGAAGGATTGCAGGGTTAGTTTAGAGGGGTCACGGGAAGGAGTAAAAGGGCCATTGACAATCGCGGCCGAGGTATTCGAGTTGACCCCGAAATTGGTGATGGTGGAGGTGAAGAGGAAAGGGGGAGATAAAGCAGAGTATGAACAATTCTGTAATAATGAACTGAAGCCAGCATTGTTGAATCTGAAGATGGAAGAGTCTGCTGCTCCATCACATATACCATCAGATACTGAATGA 1404 47.44 MAERPDPDKKTETTRKDMPALLLGRYEIGKLLGHGTFAKVYHARNIKTNESVAIKVIDKEKILKGGLIAHIKREISILRRVRHPNIVQLFEVMATKAKIYFVMEYVRGGELFKKVSKGRLKEEVARKYFQQLISAVAFCHARGVYHRDLKPENLLLDENGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYEAAKVDIWSCGVILFVLMAGYLPFHDQNIMAMYKKIYKGEFRCPRWFSPELIRLLTRLLDTNPETRFTIPEIMENKWFKKGYKHIKFYIEDDKVCSVEDGNDDVDSLSDQSQSESDSEIIETRRKITSLPRPASLNAFDIISFSPGFDLSGLFEDGGEEARFVSSAPVSKIISKLEEIAKLVSFTVRKKDCRVSLEGSREGVKGPLTIAAEVFELTPKLVMVEVKRKGGDKAEYEQFCNNELKPALLNLKMEESAAPSHIPSDTE 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35364142 35365545 - CcPI632755_04g021630.1 Cco04g2163 177388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g2163 467 FunFam Non-specific serine/threonine protein kinase 16 326 - -
Cco04g2163 467 Pfam NAF domain 334 390 IPR004041 GO:0007165(InterPro)
Cco04g2163 467 CDD STKc_SnRK3 25 279 - -
Cco04g2163 467 ProSiteProfiles Protein kinase domain profile. 26 280 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g2163 467 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 14 446 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cco04g2163 467 ProSiteProfiles NAF domain profile. 332 356 IPR018451 GO:0007165(InterPro)
Cco04g2163 467 Gene3D Kinase associated domain 1, KA1 334 452 - -
Cco04g2163 467 Pfam Protein kinase domain 26 280 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g2163 467 SMART serkin_6 26 280 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g2163 467 ProSitePatterns Protein kinases ATP-binding region signature. 32 55 IPR017441 GO:0005524(InterPro)
Cco04g2163 467 CDD CIPK_C 338 448 - -
Cco04g2163 467 FunFam Non-specific serine/threonine protein kinase 18 105 - -
Cco04g2163 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g2163 467 SUPERFAMILY Protein kinase-like (PK-like) 22 321 IPR011009 -
Cco04g2163 467 FunFam Non-specific serine/threonine protein kinase 334 452 - -
Cco04g2163 467 Gene3D Transferase(Phosphotransferase) domain 1 17 333 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0824 Cco-Chr4:23648517 Cco04g2163 Cco-Chr4:35364142 3.50E-131 dispersed
Cco04g2163 Cco-Chr4:35364142 Cco06g1418 Cco-Chr6:24685348 3.90E-144 dispersed
Cco03g0684 Cco-Chr3:7068521 Cco04g2163 Cco-Chr4:35364142 1.70E-147 wgd
Cco04g2163 Cco-Chr4:35364142 Cco07g1108 Cco-Chr7:24651475 3.40E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86796 PF00069 Pkinase 2.70E-76 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g2163 - - - 0.0