Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g2164 | ATGTGGGCTGTGACTCTGAGGGCATTTTGGTCACATAGACGTCGGCAGGCAGTCTTGTCGCCAACTCACCCAACCACACCCTTCTCTTTCCTTCCCGTCTCTGATTCCGCCATGGCCGACGATAAGGAAATGTCAGCCCCTGTCATTGATGGAAATGATCCTGTTACGGGTCACATAATATCCACGACTATTGGAGGCAAGAATGGGGAGCCCAAACAGACCATAAGCTACATGGCAGAACGTGTTGTTGGGACTGGATCATTTGGTATTGTTTTCAAGGCCAAATGCTTGGAAACGGGTGAAAATGTGGCTATAAAGAAGGTTTTGCAGGACAGAAGATATAAGAACCGTGAACTCCAGTTAATGCGTGTGATGGATCATCCAAATGTCATTTCCTTAAAGCATTGTTTCTTTTCCACTACTACAAAAGACGAACTTTTTCTCAACTTGGTAATGGAATATGTCCCTGAAACTATGTTTCGGGTTTTGAAGCATTACAGTAACGCAAATCAAAGAATGCCAATCATCTATGTCAAATTATACATGTACCAGGTTTTTAGGGGCCTGGCCTATATCCACACAGTTCCTGGAGTTTGTCACCGAGATTTGAAGCCTCAAAATATTTTGGTGGATCCCCTTACACACCAAGTTAAAATATGCGATTTTGGAAGTGCAAAAATGCTTATGAAAGGTGAAGCCAATGTTTCATACATATGTTCACGCTTCTATAGAGCACCAGAACTCATCTTCGGAGCTACAGAGTACACAACTTCAATAGATATTTGGTCTGCTGGCTGTGTCCTTGCAGAGCTACTTTTGGGACAGCCTTTGTTTCCCGGAGAGAATGCAGTGGACCAGCTTGTAGAGATTATTAAGGTTCTTGGCACCCCAACTCGTGAAGAAATTCGATGTATGAATCCAAGTTATACAGACTATAGGTTTCCACAGATAAAAGCTCACCCATGGCACAAGGTTTTCCACAAACGGATGCCTCCCGAGGCAATTGATCTGGCTTCTCGCTTGCTTCAGTATTCACCCAGTCTTCGCTGCACAGCACTGGAAGCTTGCACGCATCCTTTCTTTGACGAACTTCGAGAACCCAATGCTCGTCTCCCCAATGGTCGACCATTCCCACCCCTCTTTAATTTTAAACAAGAGCTGTCAGGTGCCTCTCCAGAGCTCGTTAACAAGTTGATACCTGATCAAGTGAAACGACAAATGGGTCTTAATTTGCATCTAGCAGTTTCTCATTTGTCTCCCAAAGGAGTGAACTATGAAGTGGCGGCTTTGATATCAGTGAAGAGTAGGATAAGGGACGAGCGGGGAGTGATGCAAGGATGGGACATAAATTCGGTTGATCCATGCACCTGGAATATGTTATCTGGTCCACTCCCAGATGATATAGGAGAACTTTCAGAGCTTCAGACTCTTGACCTTTCTAACAACCAGTTTGTAGGCGGGATTCCAAGTTCTTTGGGGTTTCTCACTCATTTAAATTACTTGAAGCTCAGTAGTAATAAGTTAAGTGGACCAATACCGGAATCTGTTGCAAATATCTCAGGCCTCTCCTTTCTAGATTTATCGAATAATAATCTCAGTGGTCCAACTCCAAGAATACTTGCCAAAGAGTACAGATCTCATCTTGTCTTCACATCCTACGTGCAACAAGATTATGAATTTGATATAGGTCATCTGAAAAGGTTTACATTCCGTGAACTACAAAAGGCAACATGTAATTTTAGTCCCCAAAACATCCTGGGACAGGGTGGTTTTGGAGTAGTTTATAAAGGTTATCTTCCAAATGGGACATATGTTGCTGTCAAGAGACTGAAAGATCCGAATTACACTGGAGAAGTGCAGTTTCAAACTGAAGTTGAAATGATTGGCTTAGCAGTGCACCGCAACCTCTTGCGTCTGTATGGCTTTTGTATGACGCCAGATGAGAGATTGCTTGTTTATCCATATATGCCAAATGGGAGTGTTGCTGACCGTCTTAGAGATGCAGGCCAAGAGAAGCCTTCATTGAATTGGAACAGAAGATTGCGTATTGCCCTTGGTGCAGCTCGTGGACTCCTATACTTGCATGAGCAGTGTAACCCAAAAATTATTCACCGGGATGTGAAAGCTGCAAATATTCTTCTAGATGAAAGCTTTGAAGCCGTGGTTGGGGATTTCGGTCTGGCAAAGATGTTAGATAGGAGAGATTCACATGTTACTACTGCAGTTAGGGGCACAGTGGGACATATTGCCCCGGAATATCTTTCAACTGGACAATCTTCAGAAAAGACTGATGTTTTTGGATTTGGCATATTGGTTCTGGAACTCTTGACAGGGCAAAAAGCACTTGATGCTGGCAATGGTCAAATTCGAAAGGGAATGATCCTCGAATGGGTTAGAACATTACATGAGGAAAAGAGGTTAGATGTGCTGGTGGACAGGGATCTTAAAGGATGTTTTGATGCAATGGAGCTGGAAAAAGCTGTAGAGTTGGCTCTGCAGTGTACTCAATCGCATCCACAACTTAGACCAAAGATGTCCGAGATCCTGAAGATTCTAGAAGGTCTCGTTGGACAGTCGAGTCAAATGGAGGAATCACCAGGTGGAGCAAGTCTTTATGAGGATAGAACTCACAGTTTCTCCAGAAATTACAGTGATATTCATGAAGAATCTTCATTTGTCGTTGAAGCCATGGAGCTTTCCGGACCTCGATGA | 2712 | 43.47 | MWAVTLRAFWSHRRRQAVLSPTHPTTPFSFLPVSDSAMADDKEMSAPVIDGNDPVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFKAKCLETGENVAIKKVLQDRRYKNRELQLMRVMDHPNVISLKHCFFSTTTKDELFLNLVMEYVPETMFRVLKHYSNANQRMPIIYVKLYMYQVFRGLAYIHTVPGVCHRDLKPQNILVDPLTHQVKICDFGSAKMLMKGEANVSYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREEIRCMNPSYTDYRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACTHPFFDELREPNARLPNGRPFPPLFNFKQELSGASPELVNKLIPDQVKRQMGLNLHLAVSHLSPKGVNYEVAALISVKSRIRDERGVMQGWDINSVDPCTWNMLSGPLPDDIGELSELQTLDLSNNQFVGGIPSSLGFLTHLNYLKLSSNKLSGPIPESVANISGLSFLDLSNNNLSGPTPRILAKEYRSHLVFTSYVQQDYEFDIGHLKRFTFRELQKATCNFSPQNILGQGGFGVVYKGYLPNGTYVAVKRLKDPNYTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTPDERLLVYPYMPNGSVADRLRDAGQEKPSLNWNRRLRIALGAARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKMLDRRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILVLELLTGQKALDAGNGQIRKGMILEWVRTLHEEKRLDVLVDRDLKGCFDAMELEKAVELALQCTQSHPQLRPKMSEILKILEGLVGQSSQMEESPGGASLYEDRTHSFSRNYSDIHEESSFVVEAMELSGPR | 903 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 35379808 | 35389437 | + | CcPI632755_04g021640.1 | Cco04g2164 | 177389 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g2164 | 903 | Pfam | Leucine rich repeat | 473 | 532 | IPR001611 | GO:0005515(InterPro) | |
Cco04g2164 | 903 | SUPERFAMILY | L domain-like | 426 | 542 | - | - | |
Cco04g2164 | 903 | ProSiteProfiles | Protein kinase domain profile. | 77 | 361 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco04g2164 | 903 | Gene3D | Phosphorylase Kinase; domain 1 | 62 | 156 | - | - | |
Cco04g2164 | 903 | Gene3D | Phosphorylase Kinase; domain 1 | 552 | 655 | - | - | |
Cco04g2164 | 903 | SUPERFAMILY | Protein kinase-like (PK-like) | 562 | 853 | IPR011009 | - | |
Cco04g2164 | 903 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 702 | 714 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco04g2164 | 903 | ProSitePatterns | Protein kinases ATP-binding region signature. | 586 | 608 | IPR017441 | GO:0005524(InterPro) | |
Cco04g2164 | 903 | PANTHER | GLYCOGEN SYNTHASE KINASE-3 ALPHA | 47 | 405 | IPR050591 | GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
Cco04g2164 | 903 | SMART | serkin_6 | 77 | 361 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco04g2164 | 903 | SMART | serkin_6 | 580 | 851 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco04g2164 | 903 | Pfam | Protein kinase domain | 583 | 850 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco04g2164 | 903 | Pfam | Protein kinase domain | 77 | 361 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco04g2164 | 903 | FunFam | Somatic embryogenesis receptor-like kinase 1 | 656 | 867 | - | - | |
Cco04g2164 | 903 | FunFam | Shaggy-related protein kinase kappa | 157 | 404 | - | - | |
Cco04g2164 | 903 | Gene3D | Ribonuclease Inhibitor | 422 | 551 | IPR032675 | - | |
Cco04g2164 | 903 | ProSitePatterns | Protein kinases ATP-binding region signature. | 83 | 107 | IPR017441 | GO:0005524(InterPro) | |
Cco04g2164 | 903 | FunFam | Piriformospora indica-insensitive protein 2 | 452 | 538 | - | - | |
Cco04g2164 | 903 | FunFam | Glycogen synthase kinase-3 beta | 61 | 156 | - | - | |
Cco04g2164 | 903 | CDD | STKc_GSK3 | 72 | 364 | IPR039192 | - | |
Cco04g2164 | 903 | FunFam | Somatic embryogenesis receptor kinase 1 | 549 | 655 | - | - | |
Cco04g2164 | 903 | Pfam | Leucine rich repeat N-terminal domain | 424 | 459 | IPR013210 | - | |
Cco04g2164 | 903 | Gene3D | Transferase(Phosphotransferase) domain 1 | 656 | 864 | - | - | |
Cco04g2164 | 903 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 198 | 210 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco04g2164 | 903 | ProSiteProfiles | Protein kinase domain profile. | 580 | 856 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco04g2164 | 903 | SUPERFAMILY | Protein kinase-like (PK-like) | 76 | 385 | IPR011009 | - | |
Cco04g2164 | 903 | Gene3D | Transferase(Phosphotransferase) domain 1 | 157 | 404 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g1914 | Cco-Chr2:32026298 | Cco04g2164 | Cco-Chr4:35379808 | 1.90E-201 | dispersed | |
Cco04g2164 | Cco-Chr4:35379808 | Cco10g1392 | Cco-Chr10:26983837 | 7.00E-182 | dispersed | |
Cco06g1792 | Cco-Chr6:28309758 | Cco04g2164 | Cco-Chr4:35379808 | 6.30E-60 | dispersed | |
Cco04g2164 | Cco-Chr4:35379808 | Cco07g0265 | Cco-Chr7:2684768 | 4.50E-197 | wgd | |
Cco04g2164 | Cco-Chr4:35379808 | Cco07g1105 | Cco-Chr7:24612574 | 3.70E-66 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86797 | PF00069 | Pkinase | 8.50E-65 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g2164 | K14502 | - | csv:101218118 | 798.505 |