Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g2164 ATGTGGGCTGTGACTCTGAGGGCATTTTGGTCACATAGACGTCGGCAGGCAGTCTTGTCGCCAACTCACCCAACCACACCCTTCTCTTTCCTTCCCGTCTCTGATTCCGCCATGGCCGACGATAAGGAAATGTCAGCCCCTGTCATTGATGGAAATGATCCTGTTACGGGTCACATAATATCCACGACTATTGGAGGCAAGAATGGGGAGCCCAAACAGACCATAAGCTACATGGCAGAACGTGTTGTTGGGACTGGATCATTTGGTATTGTTTTCAAGGCCAAATGCTTGGAAACGGGTGAAAATGTGGCTATAAAGAAGGTTTTGCAGGACAGAAGATATAAGAACCGTGAACTCCAGTTAATGCGTGTGATGGATCATCCAAATGTCATTTCCTTAAAGCATTGTTTCTTTTCCACTACTACAAAAGACGAACTTTTTCTCAACTTGGTAATGGAATATGTCCCTGAAACTATGTTTCGGGTTTTGAAGCATTACAGTAACGCAAATCAAAGAATGCCAATCATCTATGTCAAATTATACATGTACCAGGTTTTTAGGGGCCTGGCCTATATCCACACAGTTCCTGGAGTTTGTCACCGAGATTTGAAGCCTCAAAATATTTTGGTGGATCCCCTTACACACCAAGTTAAAATATGCGATTTTGGAAGTGCAAAAATGCTTATGAAAGGTGAAGCCAATGTTTCATACATATGTTCACGCTTCTATAGAGCACCAGAACTCATCTTCGGAGCTACAGAGTACACAACTTCAATAGATATTTGGTCTGCTGGCTGTGTCCTTGCAGAGCTACTTTTGGGACAGCCTTTGTTTCCCGGAGAGAATGCAGTGGACCAGCTTGTAGAGATTATTAAGGTTCTTGGCACCCCAACTCGTGAAGAAATTCGATGTATGAATCCAAGTTATACAGACTATAGGTTTCCACAGATAAAAGCTCACCCATGGCACAAGGTTTTCCACAAACGGATGCCTCCCGAGGCAATTGATCTGGCTTCTCGCTTGCTTCAGTATTCACCCAGTCTTCGCTGCACAGCACTGGAAGCTTGCACGCATCCTTTCTTTGACGAACTTCGAGAACCCAATGCTCGTCTCCCCAATGGTCGACCATTCCCACCCCTCTTTAATTTTAAACAAGAGCTGTCAGGTGCCTCTCCAGAGCTCGTTAACAAGTTGATACCTGATCAAGTGAAACGACAAATGGGTCTTAATTTGCATCTAGCAGTTTCTCATTTGTCTCCCAAAGGAGTGAACTATGAAGTGGCGGCTTTGATATCAGTGAAGAGTAGGATAAGGGACGAGCGGGGAGTGATGCAAGGATGGGACATAAATTCGGTTGATCCATGCACCTGGAATATGTTATCTGGTCCACTCCCAGATGATATAGGAGAACTTTCAGAGCTTCAGACTCTTGACCTTTCTAACAACCAGTTTGTAGGCGGGATTCCAAGTTCTTTGGGGTTTCTCACTCATTTAAATTACTTGAAGCTCAGTAGTAATAAGTTAAGTGGACCAATACCGGAATCTGTTGCAAATATCTCAGGCCTCTCCTTTCTAGATTTATCGAATAATAATCTCAGTGGTCCAACTCCAAGAATACTTGCCAAAGAGTACAGATCTCATCTTGTCTTCACATCCTACGTGCAACAAGATTATGAATTTGATATAGGTCATCTGAAAAGGTTTACATTCCGTGAACTACAAAAGGCAACATGTAATTTTAGTCCCCAAAACATCCTGGGACAGGGTGGTTTTGGAGTAGTTTATAAAGGTTATCTTCCAAATGGGACATATGTTGCTGTCAAGAGACTGAAAGATCCGAATTACACTGGAGAAGTGCAGTTTCAAACTGAAGTTGAAATGATTGGCTTAGCAGTGCACCGCAACCTCTTGCGTCTGTATGGCTTTTGTATGACGCCAGATGAGAGATTGCTTGTTTATCCATATATGCCAAATGGGAGTGTTGCTGACCGTCTTAGAGATGCAGGCCAAGAGAAGCCTTCATTGAATTGGAACAGAAGATTGCGTATTGCCCTTGGTGCAGCTCGTGGACTCCTATACTTGCATGAGCAGTGTAACCCAAAAATTATTCACCGGGATGTGAAAGCTGCAAATATTCTTCTAGATGAAAGCTTTGAAGCCGTGGTTGGGGATTTCGGTCTGGCAAAGATGTTAGATAGGAGAGATTCACATGTTACTACTGCAGTTAGGGGCACAGTGGGACATATTGCCCCGGAATATCTTTCAACTGGACAATCTTCAGAAAAGACTGATGTTTTTGGATTTGGCATATTGGTTCTGGAACTCTTGACAGGGCAAAAAGCACTTGATGCTGGCAATGGTCAAATTCGAAAGGGAATGATCCTCGAATGGGTTAGAACATTACATGAGGAAAAGAGGTTAGATGTGCTGGTGGACAGGGATCTTAAAGGATGTTTTGATGCAATGGAGCTGGAAAAAGCTGTAGAGTTGGCTCTGCAGTGTACTCAATCGCATCCACAACTTAGACCAAAGATGTCCGAGATCCTGAAGATTCTAGAAGGTCTCGTTGGACAGTCGAGTCAAATGGAGGAATCACCAGGTGGAGCAAGTCTTTATGAGGATAGAACTCACAGTTTCTCCAGAAATTACAGTGATATTCATGAAGAATCTTCATTTGTCGTTGAAGCCATGGAGCTTTCCGGACCTCGATGA 2712 43.47 MWAVTLRAFWSHRRRQAVLSPTHPTTPFSFLPVSDSAMADDKEMSAPVIDGNDPVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFKAKCLETGENVAIKKVLQDRRYKNRELQLMRVMDHPNVISLKHCFFSTTTKDELFLNLVMEYVPETMFRVLKHYSNANQRMPIIYVKLYMYQVFRGLAYIHTVPGVCHRDLKPQNILVDPLTHQVKICDFGSAKMLMKGEANVSYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREEIRCMNPSYTDYRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACTHPFFDELREPNARLPNGRPFPPLFNFKQELSGASPELVNKLIPDQVKRQMGLNLHLAVSHLSPKGVNYEVAALISVKSRIRDERGVMQGWDINSVDPCTWNMLSGPLPDDIGELSELQTLDLSNNQFVGGIPSSLGFLTHLNYLKLSSNKLSGPIPESVANISGLSFLDLSNNNLSGPTPRILAKEYRSHLVFTSYVQQDYEFDIGHLKRFTFRELQKATCNFSPQNILGQGGFGVVYKGYLPNGTYVAVKRLKDPNYTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTPDERLLVYPYMPNGSVADRLRDAGQEKPSLNWNRRLRIALGAARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKMLDRRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILVLELLTGQKALDAGNGQIRKGMILEWVRTLHEEKRLDVLVDRDLKGCFDAMELEKAVELALQCTQSHPQLRPKMSEILKILEGLVGQSSQMEESPGGASLYEDRTHSFSRNYSDIHEESSFVVEAMELSGPR 903
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35379808 35389437 + CcPI632755_04g021640.1 Cco04g2164 177389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g2164 903 Pfam Leucine rich repeat 473 532 IPR001611 GO:0005515(InterPro)
Cco04g2164 903 SUPERFAMILY L domain-like 426 542 - -
Cco04g2164 903 ProSiteProfiles Protein kinase domain profile. 77 361 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g2164 903 Gene3D Phosphorylase Kinase; domain 1 62 156 - -
Cco04g2164 903 Gene3D Phosphorylase Kinase; domain 1 552 655 - -
Cco04g2164 903 SUPERFAMILY Protein kinase-like (PK-like) 562 853 IPR011009 -
Cco04g2164 903 ProSitePatterns Serine/Threonine protein kinases active-site signature. 702 714 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g2164 903 ProSitePatterns Protein kinases ATP-binding region signature. 586 608 IPR017441 GO:0005524(InterPro)
Cco04g2164 903 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 47 405 IPR050591 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cco04g2164 903 SMART serkin_6 77 361 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g2164 903 SMART serkin_6 580 851 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g2164 903 Pfam Protein kinase domain 583 850 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g2164 903 Pfam Protein kinase domain 77 361 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g2164 903 FunFam Somatic embryogenesis receptor-like kinase 1 656 867 - -
Cco04g2164 903 FunFam Shaggy-related protein kinase kappa 157 404 - -
Cco04g2164 903 Gene3D Ribonuclease Inhibitor 422 551 IPR032675 -
Cco04g2164 903 ProSitePatterns Protein kinases ATP-binding region signature. 83 107 IPR017441 GO:0005524(InterPro)
Cco04g2164 903 FunFam Piriformospora indica-insensitive protein 2 452 538 - -
Cco04g2164 903 FunFam Glycogen synthase kinase-3 beta 61 156 - -
Cco04g2164 903 CDD STKc_GSK3 72 364 IPR039192 -
Cco04g2164 903 FunFam Somatic embryogenesis receptor kinase 1 549 655 - -
Cco04g2164 903 Pfam Leucine rich repeat N-terminal domain 424 459 IPR013210 -
Cco04g2164 903 Gene3D Transferase(Phosphotransferase) domain 1 656 864 - -
Cco04g2164 903 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g2164 903 ProSiteProfiles Protein kinase domain profile. 580 856 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g2164 903 SUPERFAMILY Protein kinase-like (PK-like) 76 385 IPR011009 -
Cco04g2164 903 Gene3D Transferase(Phosphotransferase) domain 1 157 404 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1914 Cco-Chr2:32026298 Cco04g2164 Cco-Chr4:35379808 1.90E-201 dispersed
Cco04g2164 Cco-Chr4:35379808 Cco10g1392 Cco-Chr10:26983837 7.00E-182 dispersed
Cco06g1792 Cco-Chr6:28309758 Cco04g2164 Cco-Chr4:35379808 6.30E-60 dispersed
Cco04g2164 Cco-Chr4:35379808 Cco07g0265 Cco-Chr7:2684768 4.50E-197 wgd
Cco04g2164 Cco-Chr4:35379808 Cco07g1105 Cco-Chr7:24612574 3.70E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86797 PF00069 Pkinase 8.50E-65 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g2164 K14502 - csv:101218118 798.505