Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g2173 ATGGGCCGTGAGAAGAAGCGACTTCCACGAGTAATGACTGTTGCGGGGGTAATATCAGAGCTTGATGATGATCAGGCAAATAGTGTGACTTCTGAGGGACCTTCGTCAGTGGTGCAAGACCGAATAATTATTGTTGCTAATCAGCTTCCTATTAAAGCTAAGCGTAGACCCGACAATAAAGGCTGGAGTTTTAGTTGGGATGAAGACTCTTTGCTGTGGCAGCTCAAGGATGGTTTACCTGAAGATATGGAGGTTTTGTATGTAGGATCTTTGCGGGTGGATGTTGATTCTTCCGAACAAGATGATGTATCACAGCTCTTGTTGGAGAGGTTTAAGTGCGTTCCTGCCTTTTTGCCTCATGACATTTTATCAAAATTTTATCATGGTTTTTGTAAGCAGCAATTGTGGCCACTCTTCCATTATATGCTTCCGTTCTCTGCGACTCATGGTGGTCGGTTTGATCGCTCTCTGTGGGAGGCATATGTAGCAGCAAATAAAATTTTTTCTCAAAGGGTGATTGAGGTCATAAACCCAGATGATGATTTTGTATGGATTCATGATTACCATTTAATGGTGCTGCCCTCCTTCTTGAGGAGAAGGTTTACAAGATTGAGAATGGGCTTTTTTCTTCACAGTCCATTTCCTTCGTCAGAAATATATAGGACATTGCCAGTGAGGGAAGAGATTCTTAAGGCACTTTTGAATGCAGACCTTATTGGCTTTCACACTTTCGACTATGCTCGACACTTCCTGTCTTGTTGTAGTCGGATGTTGGGTTTGGAATATCAGTCAAAGAGGGGTTATATTGGGTTGGAATATTTTGGAAGGACCGTGGGGATAAAGATCATGCCTGTTGGAATTCACATGGGCCAGATGGAGTCAGTGTTAAGACTTGCTGATAAAGACTGGAGGGTACAGGAGCTCAAAAGACAGTTTGAAGGAAAAGTTGTGTTACTTGGAGTTGATGACATGGACATTTTTAAAGGGGTCAATCTGAAGCTGTTGGCAATGGAACAAATGCTGAAGCAACATCCAAAGTGGCAGGGAAGAGCTGTTTTCATACAGATTGCAAACCCAGCTAGAGGGAGAGGGAAAGATCTCGAGGAAATACAAGATGAAATACAGGAATGCTGCAAGAGAATTAATGAAACATTTGGACAGCCAAATTACGAGCCGATTGTGTTCATTGATCGGCCTGTTTCGCTCACTGAAAGAGCTGCGTATTATACAGTTGCTGAATGCGTTGTAGTCACAGCAGTGAGGGATGGTATGAACCTAACTCCTTATGAGTACGTTGTCTGCAGGCAGGGAACCTCTGGATCAGATTATAGCACAGAAACAAATGGACCACAAAAAAGCATGCTAGTCATATCAGAGTTCATGGGATGTTCCCCTTCTCTTAGTGGTGCAATACGGGTTAACCCATGGAACATTGAAGCTACTGCTGAAGCATTGAATGAGGCAATATCAATGGCTGATGCTGAAAAGCAATTACGGCATGAAAAGCACTATAAATATGTGAGTACACATGATGTGGCGTACTGGTCAAGGAGTTTTTTCCAAGATATGGAAAGAACTTGTAAGGATCACTTCAGAAGACGGTGCTGGGGAATTGGGTTGGGCTTTGGTTTCAGAGTTGTAGCCCTTGATCCTAACTTTAGAAAGTTGTCTATTGATGCCATTGTAGCTGCATATTCAAGGTCTAAAAGGAGGGCTATACTTTTGGATTATGATGGCACTGTCATGCCACAAACTTCAATTGATAAGACCCCAAGTCGTCAAGTTATTTCAATCATAGATTCACTTTGTGATGATGTTAGGAATACTGTTTTTGTTGTCAGTGGAAGAGGACGTGAAAGTTTGGGCAATTGGTTTTCTTCTTGCGATAAACTTGGGATTGCTGCAGAGCATGGCTATTTTATGAGGTGGTCTGCTGATAAGGACTGGGAAAATTGTGGTCAAGGTAGTGATTTTGGCTGGATACAGATTGCAGAGCCAGTCATGAAATTATATACAGAAGCTACTGACGGGTCTTCCATTGAAACCAAAGAAAGTGCCTTGGTGTGGCACCACCAGGATGCGGACCCTGATTTTGGTTGCAGCCAGGCCAAGGAACTGTTGGATCACCTTGAAAGTGTGCTGGCAAATGAACCAGTTGCTGTGAAAAGTGGTCAGTTTATTGTAGAAGTGAAGCCACAGGGAGTCAGTAAAGGTTTGGTGGCAGAAAAGATCTTCACGTCAATGGCAGATGCAGGAAGACGGGCTGATTTTGTGCTATGCATCGGTGATGATAGATCTGATGAAGACATGTTTGAGATCATTGGTAATGCAGTGTCAAGTGGCGCCCTCTCTTCCAATACATTAGTTTTTGCCTGCACAGTTGGACAGAAACCAAGCAAGGCCAAGTATTACTTAGATGACACAACTGAGGTCATAAATATGCTTGAAGCCCTTGCAGAAGTTTCAGACATTTCTTCTCCTCCAGAATCCCCTTGA 2496 43.03 MGREKKRLPRVMTVAGVISELDDDQANSVTSEGPSSVVQDRIIIVANQLPIKAKRRPDNKGWSFSWDEDSLLWQLKDGLPEDMEVLYVGSLRVDVDSSEQDDVSQLLLERFKCVPAFLPHDILSKFYHGFCKQQLWPLFHYMLPFSATHGGRFDRSLWEAYVAANKIFSQRVIEVINPDDDFVWIHDYHLMVLPSFLRRRFTRLRMGFFLHSPFPSSEIYRTLPVREEILKALLNADLIGFHTFDYARHFLSCCSRMLGLEYQSKRGYIGLEYFGRTVGIKIMPVGIHMGQMESVLRLADKDWRVQELKRQFEGKVVLLGVDDMDIFKGVNLKLLAMEQMLKQHPKWQGRAVFIQIANPARGRGKDLEEIQDEIQECCKRINETFGQPNYEPIVFIDRPVSLTERAAYYTVAECVVVTAVRDGMNLTPYEYVVCRQGTSGSDYSTETNGPQKSMLVISEFMGCSPSLSGAIRVNPWNIEATAEALNEAISMADAEKQLRHEKHYKYVSTHDVAYWSRSFFQDMERTCKDHFRRRCWGIGLGFGFRVVALDPNFRKLSIDAIVAAYSRSKRRAILLDYDGTVMPQTSIDKTPSRQVISIIDSLCDDVRNTVFVVSGRGRESLGNWFSSCDKLGIAAEHGYFMRWSADKDWENCGQGSDFGWIQIAEPVMKLYTEATDGSSIETKESALVWHHQDADPDFGCSQAKELLDHLESVLANEPVAVKSGQFIVEVKPQGVSKGLVAEKIFTSMADAGRRADFVLCIGDDRSDEDMFEIIGNAVSSGALSSNTLVFACTVGQKPSKAKYYLDDTTEVINMLEALAEVSDISSPPESP 831
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35466802 35471101 + CcPI632755_04g021730.1 Cco04g2173 177398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g2173 831 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 34 293 - -
Cco04g2173 831 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 6 821 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Cco04g2173 831 FunFam Alpha,alpha-trehalose-phosphate synthase 295 508 - -
Cco04g2173 831 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 700 830 - -
Cco04g2173 831 NCBIfam trehalose-phosphatase 568 819 IPR003337 GO:0005992(InterPro)
Cco04g2173 831 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 570 687 - -
Cco04g2173 831 NCBIfam HAD-IIB family hydrolase 573 779 IPR006379 -
Cco04g2173 831 Pfam Trehalose-phosphatase 574 808 IPR003337 GO:0005992(InterPro)
Cco04g2173 831 CDD HAD_TPP 572 813 - -
Cco04g2173 831 Pfam Glycosyltransferase family 20 41 524 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cco04g2173 831 Gene3D Glycogen Phosphorylase B; 31 301 - -
Cco04g2173 831 Gene3D - 570 676 IPR023214 -
Cco04g2173 831 Gene3D - 700 826 IPR023214 -
Cco04g2173 831 Gene3D Glycogen Phosphorylase B; 302 509 - -
Cco04g2173 831 SUPERFAMILY HAD-like 571 819 IPR036412 -
Cco04g2173 831 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 40 528 - -
Cco04g2173 831 CDD GT20_TPS 41 524 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g2173 Cco-Chr4:35466802 Cco05g2787 Cco-Chr5:35639349 0.00E+00 dispersed
Cco10g0149 Cco-Chr10:1434337 Cco04g2173 Cco-Chr4:35466802 0.00E+00 transposed
Cco04g2173 Cco-Chr4:35466802 Cco07g0256 Cco-Chr7:2609373 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g2173 K16055 - csv:101213082 1652.49