Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g2184 | ATGGCTGAGATTTCAGGATCAAGCAATGGACATCACACTGTTTCTTTGAACGTCAAAGATGAATCCACAGCCGTCACCAGCAGAGAAGTAGCAGCTGACTGGCTCTCTGTACCTTTCATTCAAAAGTTGATCGCAGAGATTGTGGGGACATATTTCTTGATATTTGCTGGTGGGGCATCAGTGGTTGTGAATTTGAGCAAAGACAAAGTGATCACTTTTCCAGGGATTTCAATTGTTTGGGGTTTGGTTGTAATGGTGATGGTTTATTCTGTTGGTCATATCTCTGGTGCTCATTTCAATCCTGCTGTTACCATAGCCTTTGCCACTACCAAGAGATTTCCATGGAAACAGGTGCCAGCTTATGTGATAGCTCAAGTTCTTGGATCAACATTGGCAGCTGGGACACTTAGGCTAATATTTAATGGACACCAAGACCATTTCTCGGGGACCCTCCCAAGTGACTCATATTTGCAAACCTTTGTGATTGAATTCATCATCACATTTTACCTCATGTTTGTAGTGTCTGGTGTTGCCACTGATAATAGAGCTATTGGTGAACTTGCTGGACTTGCTGTTGGTGCTACTGTTCTTCTCAACGTGATGTTTGCAGGGCCAATTACAGGAGCATCCATGAATCCAGCCAGAAGCTTGGGACCTGCTATAGTATCAAGGCAGTTCAAAGGGTTGTGGATTTACATTGTAGCTCCCATTTTTGGGGCAATTTCAGGTGCTTTGGTTTACAATACCATCAGGTTCACAGACAAGCCTCTAAGAGAGATCACTAAAAGTGCCTCTTTCCTTAAAGGACAAAGTCGCAATGGTTCGTCTTGA | 831 | 43.44 | MAEISGSSNGHHTVSLNVKDESTAVTSREVAADWLSVPFIQKLIAEIVGTYFLIFAGGASVVVNLSKDKVITFPGISIVWGLVVMVMVYSVGHISGAHFNPAVTIAFATTKRFPWKQVPAYVIAQVLGSTLAAGTLRLIFNGHQDHFSGTLPSDSYLQTFVIEFIITFYLMFVVSGVATDNRAIGELAGLAVGATVLLNVMFAGPITGASMNPARSLGPAIVSRQFKGLWIYIVAPIFGAISGALVYNTIRFTDKPLREITKSASFLKGQSRNGSS | 276 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 35524810 | 35526394 | + | CcPI632755_04g021840.1 | Cco04g2184 | 177409 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g2184 | 276 | ProSitePatterns | MIP family signature. | 98 | 106 | IPR022357 | - | |
Cco04g2184 | 276 | Gene3D | Glycerol uptake facilitator protein. | 5 | 262 | IPR023271 | - | |
Cco04g2184 | 276 | Pfam | Major intrinsic protein | 35 | 247 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco04g2184 | 276 | SUPERFAMILY | Aquaporin-like | 35 | 261 | IPR023271 | - | |
Cco04g2184 | 276 | CDD | MIP | 41 | 250 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco04g2184 | 276 | PRINTS | Major intrinsic protein family signature | 80 | 104 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco04g2184 | 276 | PRINTS | Major intrinsic protein family signature | 41 | 60 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco04g2184 | 276 | PRINTS | Major intrinsic protein family signature | 162 | 180 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco04g2184 | 276 | PRINTS | Major intrinsic protein family signature | 230 | 250 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco04g2184 | 276 | PRINTS | Major intrinsic protein family signature | 193 | 215 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco04g2184 | 276 | PRINTS | Major intrinsic protein family signature | 117 | 136 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco04g2184 | 276 | PANTHER | AQUAPORIN NIP2-1 | 30 | 255 | IPR034294 | - | |
Cco04g2184 | 276 | NCBIfam | MIP family channel protein | 45 | 247 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g2184 | Cco-Chr4:35524810 | Cco05g1269 | Cco-Chr5:12511338 | 3.10E-80 | dispersed | |
Cco04g2184 | Cco-Chr4:35524810 | Cco10g2174 | Cco-Chr10:34890411 | 4.40E-18 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g2184 | K09874 | - | csv:101219297 | 509.99 |