Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g2191 ATGCATTGGCGGTGGGATAGGATCAAGTTCTCAGCCCACACGACCCTATATTCTACGACCAACTCAACATTTATCCTTCCGAAACGACATGTCGGCAGCTTACCTTCCTCCCTTTCTCAATTTCCCTGTAACGACTGTAACTGCATCTCTCCGCTCAATACAATTGTCATCAAAACCAATTTCAATCTTCTTCTCTTCTCCGCTTCAATGGCGAACCCAGAATCCTCCCCTATCCAACCCTCTGAAGGGGAAAAGAACGTGTATTCTATGTGGGCTCTTCCTCCGGAAGATGTGACGGCCAGAATCAAGAACCTCATGAACAGCCTCATATCCGAGTTCGGCGGTCCCCAATTCGAGCCACATATCACCGTTGTTGGGGCAATCCGTCTCACCCCTGACGATGCCCTCAACAAATTCCGCTCCGCGTGCCAGGGGCTCAAGGCTTATCAAGCCACCGTCGATCATGTATCTACCGGAACCTTCTTCTACCAGTGTGTTTTTCTCCTTATTCATCCTACCACTGAGGTGGTGGAGACTAGTTCACATTGCTGTGCACATTTTGGTTACAAAAACTCTACCCCTTACATGCCGCATATGAGCCTACTGTATGCCAACATATCAGATGAAAAAAAGAAGCAAGCAAAAGATATAGCAGACAAGCTTGATGAAGCCGTGAATGGCCTGAAGTTCCCAATCACTCGACTTGCACTGTACAAAACAGACACTGAGGATCAAACTTTAAAGTCCTGGGAGAAAATTGCAGAACACGATCTTCCTTCAAGGAGGAAAAACCAAGCTTCATTGCTGAAGGAAGATTACAGACATTACTGCATGCTCTTCCATTTGGTGAAAAGATTGCAAATGCTGAGATACCCTTTACAGCATCAGAAGCCCACAAAAACAGTCATGGATAGTCCAGTGAGGTTTAAGTTGGGGAAACAGTCGTCCCTGGCGCCGGATGGGCATCTCGAAGATTTGGAGGAGCTAGTCAAGCAGGACCAAACTGAGGAGGGGATAGATTCGAAGGTGAGGTTGATGTACTTGGCCAATGAAGGTGATTTGGAAGGGATTAATGAACTGTTGGATTCGGGAGTCGATGTCAATTTCCATGATATCGACAACCGGACGGCTCTGCATATTGCTGCTTGCCAGGGATTCGCCGACGTTGTCGCTTTGTTGCTCGAACGTGGCGCTGAAGTTGACTCCAAAGATCGCTGGGGGAGCACGCCTCTTAGGGATGCTGTACATTACAAAAACCACGATGTGATCAAACTTCTGGAGAAGCATGGTGCAAAGCCTCCGGTGGCCCCCATGCTCGTCAAGAATGCCCGTGAAGTTCCAGATTATGAAATTGATCCTAAGGAACTTGATTTTACTAACAGTATGAACATTACCAAGGGAACATTCCGCAAAGCATCTTGGCGTGGAACTGAGGTTGCTGTGAAAGAGCTTGGAGAAGATCTATTCACTGATGAGGATAAAGTGAGGGCTTTCAGAGATGAGCTTGCATTGCTTCAGAAAATACGACACCCCAATGTTGTCCAGTTTCTTGGTGCTGTTACTCAAAGTTGGCCGATGATGATCGTTACAGAATATTTACCAAAGGGAGATCTAGGAGCATTATTGAGTAGAAAAAGAGAAATAAAAACAATGACGGTTGTGAGACTTGCCCTTGATATTGCAAGAAATATTCTGAGGGATGATTCTGGCCACCTGAAAGTAGCAAATTTTGGAGTTAGCAAGTTAGTGAAAGTTAAAGAAGATACACTTTCGACTCATTCAGAGACTTCACGAAGATATGAAGCTCCGGAGGTTTTCAAAAATGAAGAATATGACACAAAGGTGGATGTGTTTTCTTTTGCTTTGATTTTACAAGAGATGATTGAAGGCTGTCCTCCATTTCCTGACAAGGCAGATAGTGAAGTTCCTAAATTATATGCAGCAGGAGAACGGCCCCCATTTAGAGCATCACTTAAACGTTATGCAAATGGACTAAAAGAGCTAATTGAAGAATGTTGGAATGAGAAGCCAAATAGTAGACCAACTTTTAGGCAGATAATAACCCAGCTGGAATTCATTTACAACAGATTCGGTCATAAGAGGCGCTGGAAGGATTGTGAGACCCGAATCTTCATTGTTACTTTGAAATGCAAGATCGTGCTAGTAGCTACCAACTTTTGCCAATGTGATCCATCAAATTGGAAAAGTTTGACAAACAGACCCATATTCAACGTTGTGAAAAACAACCGTTCTCTTTGTCAAAGACAAGATGCCTTCTTGATTGCAACTGGGCAAGCAAAGCAACCTCCATCAAAGTCTCTTATTTACTACAAATTGGTCAAAGTTTCCTAG 2352 44.26 MHWRWDRIKFSAHTTLYSTTNSTFILPKRHVGSLPSSLSQFPCNDCNCISPLNTIVIKTNFNLLLFSASMANPESSPIQPSEGEKNVYSMWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLLIHPTTEVVETSSHCCAHFGYKNSTPYMPHMSLLYANISDEKKKQAKDIADKLDEAVNGLKFPITRLALYKTDTEDQTLKSWEKIAEHDLPSRRKNQASLLKEDYRHYCMLFHLVKRLQMLRYPLQHQKPTKTVMDSPVRFKLGKQSSLAPDGHLEDLEELVKQDQTEEGIDSKVRLMYLANEGDLEGINELLDSGVDVNFHDIDNRTALHIAACQGFADVVALLLERGAEVDSKDRWGSTPLRDAVHYKNHDVIKLLEKHGAKPPVAPMLVKNAREVPDYEIDPKELDFTNSMNITKGTFRKASWRGTEVAVKELGEDLFTDEDKVRAFRDELALLQKIRHPNVVQFLGAVTQSWPMMIVTEYLPKGDLGALLSRKREIKTMTVVRLALDIARNILRDDSGHLKVANFGVSKLVKVKEDTLSTHSETSRRYEAPEVFKNEEYDTKVDVFSFALILQEMIEGCPPFPDKADSEVPKLYAAGERPPFRASLKRYANGLKELIEECWNEKPNSRPTFRQIITQLEFIYNRFGHKRRWKDCETRIFIVTLKCKIVLVATNFCQCDPSNWKSLTNRPIFNVVKNNRSLCQRQDAFLIATGQAKQPPSKSLIYYKLVKVS 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35553621 35563533 + CcPI632755_04g021910.1 Cco04g2191 177416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g2191 783 Pfam Protein tyrosine and serine/threonine kinase 463 690 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g2191 783 Gene3D Transferase(Phosphotransferase) domain 1 541 713 - -
Cco04g2191 783 Pfam Cyclic phosphodiesterase-like protein 89 250 IPR012386 GO:0004112(InterPro)
Cco04g2191 783 Pfam Ankyrin repeats (3 copies) 345 433 IPR002110 GO:0005515(InterPro)
Cco04g2191 783 FunFam Cyclic phosphodiesterase 82 261 - -
Cco04g2191 783 SUPERFAMILY Ankyrin repeat 320 434 IPR036770 -
Cco04g2191 783 SMART ANK_2a 406 435 IPR002110 GO:0005515(InterPro)
Cco04g2191 783 SMART ANK_2a 373 402 IPR002110 GO:0005515(InterPro)
Cco04g2191 783 SMART ANK_2a 340 369 IPR002110 GO:0005515(InterPro)
Cco04g2191 783 ProSiteProfiles Ankyrin repeat region circular profile. 373 405 - -
Cco04g2191 783 FunFam Integrin-linked protein kinase family 322 449 - -
Cco04g2191 783 ProSiteProfiles Protein kinase domain profile. 423 693 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g2191 783 Gene3D Cyclic phosphodiesterase 81 266 - -
Cco04g2191 783 SUPERFAMILY LigT-like 85 258 IPR009097 -
Cco04g2191 783 Gene3D Phosphorylase Kinase; domain 1 451 533 - -
Cco04g2191 783 Gene3D - 313 445 IPR036770 -
Cco04g2191 783 PANTHER 2',3'-CYCLIC-NUCLEOTIDE 3'-PHOSPHODIESTERASE 84 258 IPR012386 GO:0004112(InterPro)|GO:0004113(PANTHER)|GO:0009187(PANTHER)
Cco04g2191 783 FunFam serine/threonine-protein kinase STY46-like 451 534 - -
Cco04g2191 783 ProSiteProfiles Ankyrin repeat profile. 373 405 IPR002110 GO:0005515(InterPro)
Cco04g2191 783 SUPERFAMILY Protein kinase-like (PK-like) 466 696 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g2191 Cco-Chr4:35553621 Cco09g1497 Cco-Chr9:20461374 4.10E-69 dispersed
Cco02g1958 Cco-Chr2:32505450 Cco04g2191 Cco-Chr4:35553621 5.90E-115 wgd
Cco03g0718 Cco-Chr3:7372282 Cco04g2191 Cco-Chr4:35553621 2.80E-122 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86798 PF07714 PK_Tyr_Ser-Thr 3.50E-38 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g2191 - - - 0.0