Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g2191 | ATGCATTGGCGGTGGGATAGGATCAAGTTCTCAGCCCACACGACCCTATATTCTACGACCAACTCAACATTTATCCTTCCGAAACGACATGTCGGCAGCTTACCTTCCTCCCTTTCTCAATTTCCCTGTAACGACTGTAACTGCATCTCTCCGCTCAATACAATTGTCATCAAAACCAATTTCAATCTTCTTCTCTTCTCCGCTTCAATGGCGAACCCAGAATCCTCCCCTATCCAACCCTCTGAAGGGGAAAAGAACGTGTATTCTATGTGGGCTCTTCCTCCGGAAGATGTGACGGCCAGAATCAAGAACCTCATGAACAGCCTCATATCCGAGTTCGGCGGTCCCCAATTCGAGCCACATATCACCGTTGTTGGGGCAATCCGTCTCACCCCTGACGATGCCCTCAACAAATTCCGCTCCGCGTGCCAGGGGCTCAAGGCTTATCAAGCCACCGTCGATCATGTATCTACCGGAACCTTCTTCTACCAGTGTGTTTTTCTCCTTATTCATCCTACCACTGAGGTGGTGGAGACTAGTTCACATTGCTGTGCACATTTTGGTTACAAAAACTCTACCCCTTACATGCCGCATATGAGCCTACTGTATGCCAACATATCAGATGAAAAAAAGAAGCAAGCAAAAGATATAGCAGACAAGCTTGATGAAGCCGTGAATGGCCTGAAGTTCCCAATCACTCGACTTGCACTGTACAAAACAGACACTGAGGATCAAACTTTAAAGTCCTGGGAGAAAATTGCAGAACACGATCTTCCTTCAAGGAGGAAAAACCAAGCTTCATTGCTGAAGGAAGATTACAGACATTACTGCATGCTCTTCCATTTGGTGAAAAGATTGCAAATGCTGAGATACCCTTTACAGCATCAGAAGCCCACAAAAACAGTCATGGATAGTCCAGTGAGGTTTAAGTTGGGGAAACAGTCGTCCCTGGCGCCGGATGGGCATCTCGAAGATTTGGAGGAGCTAGTCAAGCAGGACCAAACTGAGGAGGGGATAGATTCGAAGGTGAGGTTGATGTACTTGGCCAATGAAGGTGATTTGGAAGGGATTAATGAACTGTTGGATTCGGGAGTCGATGTCAATTTCCATGATATCGACAACCGGACGGCTCTGCATATTGCTGCTTGCCAGGGATTCGCCGACGTTGTCGCTTTGTTGCTCGAACGTGGCGCTGAAGTTGACTCCAAAGATCGCTGGGGGAGCACGCCTCTTAGGGATGCTGTACATTACAAAAACCACGATGTGATCAAACTTCTGGAGAAGCATGGTGCAAAGCCTCCGGTGGCCCCCATGCTCGTCAAGAATGCCCGTGAAGTTCCAGATTATGAAATTGATCCTAAGGAACTTGATTTTACTAACAGTATGAACATTACCAAGGGAACATTCCGCAAAGCATCTTGGCGTGGAACTGAGGTTGCTGTGAAAGAGCTTGGAGAAGATCTATTCACTGATGAGGATAAAGTGAGGGCTTTCAGAGATGAGCTTGCATTGCTTCAGAAAATACGACACCCCAATGTTGTCCAGTTTCTTGGTGCTGTTACTCAAAGTTGGCCGATGATGATCGTTACAGAATATTTACCAAAGGGAGATCTAGGAGCATTATTGAGTAGAAAAAGAGAAATAAAAACAATGACGGTTGTGAGACTTGCCCTTGATATTGCAAGAAATATTCTGAGGGATGATTCTGGCCACCTGAAAGTAGCAAATTTTGGAGTTAGCAAGTTAGTGAAAGTTAAAGAAGATACACTTTCGACTCATTCAGAGACTTCACGAAGATATGAAGCTCCGGAGGTTTTCAAAAATGAAGAATATGACACAAAGGTGGATGTGTTTTCTTTTGCTTTGATTTTACAAGAGATGATTGAAGGCTGTCCTCCATTTCCTGACAAGGCAGATAGTGAAGTTCCTAAATTATATGCAGCAGGAGAACGGCCCCCATTTAGAGCATCACTTAAACGTTATGCAAATGGACTAAAAGAGCTAATTGAAGAATGTTGGAATGAGAAGCCAAATAGTAGACCAACTTTTAGGCAGATAATAACCCAGCTGGAATTCATTTACAACAGATTCGGTCATAAGAGGCGCTGGAAGGATTGTGAGACCCGAATCTTCATTGTTACTTTGAAATGCAAGATCGTGCTAGTAGCTACCAACTTTTGCCAATGTGATCCATCAAATTGGAAAAGTTTGACAAACAGACCCATATTCAACGTTGTGAAAAACAACCGTTCTCTTTGTCAAAGACAAGATGCCTTCTTGATTGCAACTGGGCAAGCAAAGCAACCTCCATCAAAGTCTCTTATTTACTACAAATTGGTCAAAGTTTCCTAG | 2352 | 44.26 | MHWRWDRIKFSAHTTLYSTTNSTFILPKRHVGSLPSSLSQFPCNDCNCISPLNTIVIKTNFNLLLFSASMANPESSPIQPSEGEKNVYSMWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLLIHPTTEVVETSSHCCAHFGYKNSTPYMPHMSLLYANISDEKKKQAKDIADKLDEAVNGLKFPITRLALYKTDTEDQTLKSWEKIAEHDLPSRRKNQASLLKEDYRHYCMLFHLVKRLQMLRYPLQHQKPTKTVMDSPVRFKLGKQSSLAPDGHLEDLEELVKQDQTEEGIDSKVRLMYLANEGDLEGINELLDSGVDVNFHDIDNRTALHIAACQGFADVVALLLERGAEVDSKDRWGSTPLRDAVHYKNHDVIKLLEKHGAKPPVAPMLVKNAREVPDYEIDPKELDFTNSMNITKGTFRKASWRGTEVAVKELGEDLFTDEDKVRAFRDELALLQKIRHPNVVQFLGAVTQSWPMMIVTEYLPKGDLGALLSRKREIKTMTVVRLALDIARNILRDDSGHLKVANFGVSKLVKVKEDTLSTHSETSRRYEAPEVFKNEEYDTKVDVFSFALILQEMIEGCPPFPDKADSEVPKLYAAGERPPFRASLKRYANGLKELIEECWNEKPNSRPTFRQIITQLEFIYNRFGHKRRWKDCETRIFIVTLKCKIVLVATNFCQCDPSNWKSLTNRPIFNVVKNNRSLCQRQDAFLIATGQAKQPPSKSLIYYKLVKVS | 783 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 35553621 | 35563533 | + | CcPI632755_04g021910.1 | Cco04g2191 | 177416 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g2191 | 783 | Pfam | Protein tyrosine and serine/threonine kinase | 463 | 690 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco04g2191 | 783 | Gene3D | Transferase(Phosphotransferase) domain 1 | 541 | 713 | - | - | |
Cco04g2191 | 783 | Pfam | Cyclic phosphodiesterase-like protein | 89 | 250 | IPR012386 | GO:0004112(InterPro) | |
Cco04g2191 | 783 | Pfam | Ankyrin repeats (3 copies) | 345 | 433 | IPR002110 | GO:0005515(InterPro) | |
Cco04g2191 | 783 | FunFam | Cyclic phosphodiesterase | 82 | 261 | - | - | |
Cco04g2191 | 783 | SUPERFAMILY | Ankyrin repeat | 320 | 434 | IPR036770 | - | |
Cco04g2191 | 783 | SMART | ANK_2a | 406 | 435 | IPR002110 | GO:0005515(InterPro) | |
Cco04g2191 | 783 | SMART | ANK_2a | 373 | 402 | IPR002110 | GO:0005515(InterPro) | |
Cco04g2191 | 783 | SMART | ANK_2a | 340 | 369 | IPR002110 | GO:0005515(InterPro) | |
Cco04g2191 | 783 | ProSiteProfiles | Ankyrin repeat region circular profile. | 373 | 405 | - | - | |
Cco04g2191 | 783 | FunFam | Integrin-linked protein kinase family | 322 | 449 | - | - | |
Cco04g2191 | 783 | ProSiteProfiles | Protein kinase domain profile. | 423 | 693 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco04g2191 | 783 | Gene3D | Cyclic phosphodiesterase | 81 | 266 | - | - | |
Cco04g2191 | 783 | SUPERFAMILY | LigT-like | 85 | 258 | IPR009097 | - | |
Cco04g2191 | 783 | Gene3D | Phosphorylase Kinase; domain 1 | 451 | 533 | - | - | |
Cco04g2191 | 783 | Gene3D | - | 313 | 445 | IPR036770 | - | |
Cco04g2191 | 783 | PANTHER | 2',3'-CYCLIC-NUCLEOTIDE 3'-PHOSPHODIESTERASE | 84 | 258 | IPR012386 | GO:0004112(InterPro)|GO:0004113(PANTHER)|GO:0009187(PANTHER) | |
Cco04g2191 | 783 | FunFam | serine/threonine-protein kinase STY46-like | 451 | 534 | - | - | |
Cco04g2191 | 783 | ProSiteProfiles | Ankyrin repeat profile. | 373 | 405 | IPR002110 | GO:0005515(InterPro) | |
Cco04g2191 | 783 | SUPERFAMILY | Protein kinase-like (PK-like) | 466 | 696 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g2191 | Cco-Chr4:35553621 | Cco09g1497 | Cco-Chr9:20461374 | 4.10E-69 | dispersed | |
Cco02g1958 | Cco-Chr2:32505450 | Cco04g2191 | Cco-Chr4:35553621 | 5.90E-115 | wgd | |
Cco03g0718 | Cco-Chr3:7372282 | Cco04g2191 | Cco-Chr4:35553621 | 2.80E-122 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86798 | PF07714 | PK_Tyr_Ser-Thr | 3.50E-38 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g2191 | - | - | - | 0.0 |