Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g2193 ATGTCCAAGCCTTATCAGTCACCACTCACAAGAATGATTAGGGGAAAAGGAAAGCTCTTTTCCTCATCAGGTAAGTTGCAAATAAAGGGGTTCCAGAATCAAGAAGAGAAGATGTCAGACTCACCTCAGAGGAAGATGGGAAGAGGAAAGATTGAGATTAAGAGGATCGAAAATACAACAAATCGTCAAGTCACTTTCTGTAAGAGAAGAAATGGGTTGCTCAAAAAAGCGTATGAACTTTCTGTTCTATGTGATGCTGAAGTTGCTCTCATCGTTTTCTCAAGCCGTGGCCGCCTCTATGAGTATGCTAACAACAGTGTGAAGGCAACAATTGATAGGTACAAGAAGGCATCCTCAGATTCCACCAACACTGGATCTACTTCTGAAGCTAACACTCAGTTTTACCAACAAGAAGCTGCCAAACTCCGAGTTCAGATTGGTAACTTACAGAACTCAAACAGGAACATGTTGGGCGAGTCTTTAAGTTCTTTGAGTGTAAAAGATCTGAGAAGCCTGGAGAGCAAACTTGAGAAAGGAATTAGCAGAATTAGGTCCAAAAAGAATGAACTCCTCTTTGCTGAAATTGAGTATATGCGAAAAAGGGAAATTGATTTGCACAACAACAATCAGCTGCTTCGAGCAAAGATAGCTGAGAGCGAAAGAAATGTGAACATGATGGGAGGAGAATTTGAGCTGATGCAATCTCATCCGTACGATCCAAGAGACTTCTTCCAAGTGAACGGCTTACAACATAATCATCAATATCCACGCCAAGACAACATGGCTCTTCACACTCTGATTGGTGGATTGGATTATATTATAAGGAGTGCTGGCCATTTGCCGATTGAAAGTCTCAACTTTCTCTGA 867 41.41 MSKPYQSPLTRMIRGKGKLFSSSGKLQIKGFQNQEEKMSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIDRYKKASSDSTNTGSTSEANTQFYQQEAAKLRVQIGNLQNSNRNMLGESLSSLSVKDLRSLESKLEKGISRIRSKKNELLFAEIEYMRKREIDLHNNNQLLRAKIAESERNVNMMGGEFELMQSHPYDPRDFFQVNGLQHNHQYPRQDNMALHTLIGGLDYIIRSAGHLPIESLNFL 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35570562 35577419 + CcPI632755_04g021930.1 Cco04g2193 177418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g2193 288 PRINTS MADS domain signature 48 68 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco04g2193 288 PRINTS MADS domain signature 83 104 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco04g2193 288 PRINTS MADS domain signature 68 83 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco04g2193 288 FunFam agamous-like MADS-box protein AGL11 58 141 - -
Cco04g2193 288 CDD MADS_MEF2_like 47 121 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cco04g2193 288 SMART madsneu2 46 105 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco04g2193 288 SUPERFAMILY SRF-like 47 123 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco04g2193 288 PANTHER SERUM RESPONSE FACTOR HOMOLOG 46 241 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cco04g2193 288 Coils Coil 169 189 - -
Cco04g2193 288 Pfam K-box region 128 216 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco04g2193 288 ProSiteProfiles K-box domain profile. 132 222 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco04g2193 288 Gene3D - 58 140 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco04g2193 288 ProSiteProfiles MADS-box domain profile. 46 106 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco04g2193 288 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 55 102 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco04g2193 288 ProSitePatterns MADS-box domain signature. 48 102 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1582 Cco-Chr4:31196782 Cco04g2193 Cco-Chr4:35570562 3.90E-36 dispersed
Cco04g2193 Cco-Chr4:35570562 Cco08g0096 Cco-Chr8:1584628 1.20E-71 dispersed
Cco04g0488 Cco-Chr4:15779386 Cco04g2193 Cco-Chr4:35570562 1.70E-32 transposed
Cco02g1961 Cco-Chr2:32534100 Cco04g2193 Cco-Chr4:35570562 6.70E-56 wgd
Cco03g0720 Cco-Chr3:7396523 Cco04g2193 Cco-Chr4:35570562 3.00E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59159 PF01486 K-box 3.90E-28 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g2193 K09264 - csv:101221430 450.669