Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g2193 | ATGTCCAAGCCTTATCAGTCACCACTCACAAGAATGATTAGGGGAAAAGGAAAGCTCTTTTCCTCATCAGGTAAGTTGCAAATAAAGGGGTTCCAGAATCAAGAAGAGAAGATGTCAGACTCACCTCAGAGGAAGATGGGAAGAGGAAAGATTGAGATTAAGAGGATCGAAAATACAACAAATCGTCAAGTCACTTTCTGTAAGAGAAGAAATGGGTTGCTCAAAAAAGCGTATGAACTTTCTGTTCTATGTGATGCTGAAGTTGCTCTCATCGTTTTCTCAAGCCGTGGCCGCCTCTATGAGTATGCTAACAACAGTGTGAAGGCAACAATTGATAGGTACAAGAAGGCATCCTCAGATTCCACCAACACTGGATCTACTTCTGAAGCTAACACTCAGTTTTACCAACAAGAAGCTGCCAAACTCCGAGTTCAGATTGGTAACTTACAGAACTCAAACAGGAACATGTTGGGCGAGTCTTTAAGTTCTTTGAGTGTAAAAGATCTGAGAAGCCTGGAGAGCAAACTTGAGAAAGGAATTAGCAGAATTAGGTCCAAAAAGAATGAACTCCTCTTTGCTGAAATTGAGTATATGCGAAAAAGGGAAATTGATTTGCACAACAACAATCAGCTGCTTCGAGCAAAGATAGCTGAGAGCGAAAGAAATGTGAACATGATGGGAGGAGAATTTGAGCTGATGCAATCTCATCCGTACGATCCAAGAGACTTCTTCCAAGTGAACGGCTTACAACATAATCATCAATATCCACGCCAAGACAACATGGCTCTTCACACTCTGATTGGTGGATTGGATTATATTATAAGGAGTGCTGGCCATTTGCCGATTGAAAGTCTCAACTTTCTCTGA | 867 | 41.41 | MSKPYQSPLTRMIRGKGKLFSSSGKLQIKGFQNQEEKMSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIDRYKKASSDSTNTGSTSEANTQFYQQEAAKLRVQIGNLQNSNRNMLGESLSSLSVKDLRSLESKLEKGISRIRSKKNELLFAEIEYMRKREIDLHNNNQLLRAKIAESERNVNMMGGEFELMQSHPYDPRDFFQVNGLQHNHQYPRQDNMALHTLIGGLDYIIRSAGHLPIESLNFL | 288 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 35570562 | 35577419 | + | CcPI632755_04g021930.1 | Cco04g2193 | 177418 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g2193 | 288 | PRINTS | MADS domain signature | 48 | 68 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco04g2193 | 288 | PRINTS | MADS domain signature | 83 | 104 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco04g2193 | 288 | PRINTS | MADS domain signature | 68 | 83 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco04g2193 | 288 | FunFam | agamous-like MADS-box protein AGL11 | 58 | 141 | - | - | |
Cco04g2193 | 288 | CDD | MADS_MEF2_like | 47 | 121 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Cco04g2193 | 288 | SMART | madsneu2 | 46 | 105 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco04g2193 | 288 | SUPERFAMILY | SRF-like | 47 | 123 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco04g2193 | 288 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 46 | 241 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cco04g2193 | 288 | Coils | Coil | 169 | 189 | - | - | |
Cco04g2193 | 288 | Pfam | K-box region | 128 | 216 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cco04g2193 | 288 | ProSiteProfiles | K-box domain profile. | 132 | 222 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cco04g2193 | 288 | Gene3D | - | 58 | 140 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco04g2193 | 288 | ProSiteProfiles | MADS-box domain profile. | 46 | 106 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco04g2193 | 288 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 55 | 102 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco04g2193 | 288 | ProSitePatterns | MADS-box domain signature. | 48 | 102 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g1582 | Cco-Chr4:31196782 | Cco04g2193 | Cco-Chr4:35570562 | 3.90E-36 | dispersed | |
Cco04g2193 | Cco-Chr4:35570562 | Cco08g0096 | Cco-Chr8:1584628 | 1.20E-71 | dispersed | |
Cco04g0488 | Cco-Chr4:15779386 | Cco04g2193 | Cco-Chr4:35570562 | 1.70E-32 | transposed | |
Cco02g1961 | Cco-Chr2:32534100 | Cco04g2193 | Cco-Chr4:35570562 | 6.70E-56 | wgd | |
Cco03g0720 | Cco-Chr3:7396523 | Cco04g2193 | Cco-Chr4:35570562 | 3.00E-79 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59159 | PF01486 | K-box | 3.90E-28 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g2193 | K09264 | - | csv:101221430 | 450.669 |