Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g2215 ATGTTCGAAGCCCTAGGTTGTGTACCAAATCCATTCGTTCGCATCCTCATATCCACGTCTGTTCAATGCACTGTTTTGTTTAGATTCACTCACGACCCCCAAGCACTTAATGAAGCCCCATTCGTTCGCCCTAAAGTTAGATTCAGACCCCCAAATCCACGCACCCTCAACAAGGGAAATAATTCAACTGTAGTTCTACTAACTGCAACCTCTGCAACCTCCATCCTCGAAGCAATGGATGATCCTGAACTAGAAGCAATCAGACAGAGAAGAATGCAGGAACTCATGGCCCAGCGTGGCATGGGAACCCAAAGTAATCCTGAACAACAGAAGGCCCAGGAAGAAGCTAGGAGTGAAGCAGAGGAACGCAGACAAATGATGCTTAGTCAGATTCTGTCGATGCAAGCGAGAGAAAGACTTTCTCGAATTGCATTGGTTAAACCTGAGAAGGCGAGAGGTGTCGAAGATGTTATACTGAGAGCTGCACAGATGGGCCAAATTGTTGAAAAGGTCTCTGAAGAGAGGCTGATAACATTGCTAGAACAGATCAACAATCAGACCACAAAACAGACGAAAGTCACTTCTGAGAGTATTTTTAATCAAGAGATTGATCTGTCACTGTCTGGTGCAATCCACGCAAATTTGGAACCATTGATTACAGCTCTTGATGAAGGGTTGCATTGGGTTGCTGTTTACAAGTTAAAAGATGGAAGTGCATTTAGTACCATCTTCTGTTTCAATATAATTGTGGAAATAAAAGATAAGGTGTTGGAAAAGGATACTAAAGAAATTCTTGCACAAAAGAAGAATATTCCAGTTTCTGGGTCCCAACAAAAAGCTTCTATCTTCCTAATTAACTCCCATTTGAGCTCTCACTTTCTCCATTTGACTTCGAATTCATCCCTTAATATCATTGCCCTGCCTCCGTTTCATTCTGACGCCTTCTGTTTCTGCAAAACTATTGGACTCAAGGCTGCTGGTTGCATCTTGTCCTCAGAGGTCAACCATCGCCATATCTCAATGGAGAAAGAGCCTCTTCTTCCATATCTCAGCCCAAGAGGGAAACCGCCTCCTCCACTTCCTCAATTATGTCCACTCCCTGAAAACGATGAAATTACTCTGCCTATGACCCCCACGGAGCTCAAAGACCGCTTGATCTTTGGTCCTTCGTCGTCCCCACAAGACGCTTCTCCTGTATTCGATGCTTTAACGCTAACTCTTTCCTCTTCCAGACCCTCTGCTTCATCTTCTCTTCAGGACCCGTCTACGCCTTTGGACCCAAAATCACAATCGCAGTCTCAACAGGCGTGGCTCGTGGATTCCAATTACACATGGCCCAAAAGCAACCTCCACCGCTCCAAAACCGCGCCTGCCATGGCGGTCATCAACGATGTCAATCATTCGCAGGAGCCCAAGCCACAATTTGGTAAACAATCTATCATCCGCCAAGCTGTTGTTCTTCTAATTATTTACTTATCATTGGGCGTGGTTATCTATTGGATTAATCGTGATAAGTTTACGGCTCACGAGACTCATCCTGTGGTCGATGCATTGTACTTTTGCATTGTAACGATGTGTACTATTGGGTATGGAGATATTACCCCCAATAGTGCGGCGACGAAGCTGTTCTCAGTGTTGTTTGTGTTGGTGGGATTTGGGTTTATTGATATATTGCTCTCTGGAATGGTCAGTTATGTGCTTGATTTGCAGGAGAGTTATTTGTTAAGGAATGTAAAGAGGGGGGTGCAGCGTCAATCTGGGAAATCTTATATAATTGATGTAAAGAAGGGAAGAATGAGGATTAGAATGAAAGTGGCATTGGCCCTTGGTGTTGTGATACTTTGTATAGGAGTTGGCATGGGTGTTATGCATTTTGTTGAGAATCTGGGGTGGTTGGATTCATTTTATCTTTCAGTTATGTCTGTCACGACAGTTGGATATGGTGATCAGGCATTCAAGTCAATGACTGGTCGTATTTTTGCTTCTATCTGGTTGCTTGTATCAACCCTTGCTGTAGCTCGGGCGTTTCTTTATTTAGCAGAGGCAAGAGTAGATAAGCGGCACAGGATGATGGCAAAATGGATACTTGGTCAGGATATGACTGTTTCTGAGTTTCTTGCTGCTGATATTGACAACAATGGCTTTGTGAGTAGGTCAGAATATGTGATATACAAGCTGAAGGAGATGGGTAAGGTATCAGAGAAAGATGTCATGCAGATATCTAATAACTTTGATAGGCTAGACACTGGCAAATGTGGGAAGATTACACTGGCTGATCTCTTGGAAAGTCATCACTGA 2298 43.69 MFEALGCVPNPFVRILISTSVQCTVLFRFTHDPQALNEAPFVRPKVRFRPPNPRTLNKGNNSTVVLLTATSATSILEAMDDPELEAIRQRRMQELMAQRGMGTQSNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTSESIFNQEIDLSLSGAIHANLEPLITALDEGLHWVAVYKLKDGSAFSTIFCFNIIVEIKDKVLEKDTKEILAQKKNIPVSGSQQKASIFLINSHLSSHFLHLTSNSSLNIIALPPFHSDAFCFCKTIGLKAAGCILSSEVNHRHISMEKEPLLPYLSPRGKPPPPLPQLCPLPENDEITLPMTPTELKDRLIFGPSSSPQDASPVFDALTLTLSSSRPSASSSLQDPSTPLDPKSQSQSQQAWLVDSNYTWPKSNLHRSKTAPAMAVINDVNHSQEPKPQFGKQSIIRQAVVLLIIYLSLGVVIYWINRDKFTAHETHPVVDALYFCIVTMCTIGYGDITPNSAATKLFSVLFVLVGFGFIDILLSGMVSYVLDLQESYLLRNVKRGVQRQSGKSYIIDVKKGRMRIRMKVALALGVVILCIGVGMGVMHFVENLGWLDSFYLSVMSVTTVGYGDQAFKSMTGRIFASIWLLVSTLAVARAFLYLAEARVDKRHRMMAKWILGQDMTVSEFLAADIDNNGFVSRSEYVIYKLKEMGKVSEKDVMQISNNFDRLDTGKCGKITLADLLESHH 765
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35740941 35756471 + CcPI632755_04g022150.1 Cco04g2215 177440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g2215 765 SUPERFAMILY Double-stranded DNA-binding domain 87 193 IPR036883 GO:0003677(InterPro)
Cco04g2215 765 FunFam Programmed cell death, putative 80 188 - -
Cco04g2215 765 Pfam Ion channel 612 681 IPR013099 -
Cco04g2215 765 Pfam Ion channel 487 566 IPR013099 -
Cco04g2215 765 ProSitePatterns EF-hand calcium-binding domain. 709 721 IPR018247 -
Cco04g2215 765 PRINTS Two pore domain K+ channel signature 523 551 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Cco04g2215 765 PRINTS Two pore domain K+ channel signature 643 652 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Cco04g2215 765 FunFam Two-pore potassium channel 5 469 579 - -
Cco04g2215 765 PANTHER PROGRAMMED CELL DEATH PROTEIN 5 79 195 IPR002836 GO:0003677(InterPro)|GO:0005634(PANTHER)|GO:0005829(PANTHER)
Cco04g2215 765 Gene3D - 80 188 IPR036883 GO:0003677(InterPro)
Cco04g2215 765 MobiDBLite consensus disorder prediction 99 124 - -
Cco04g2215 765 FunFam Two-pore potassium channel 3 588 702 - -
Cco04g2215 765 Pfam Double-stranded DNA-binding domain 87 194 IPR002836 GO:0003677(InterPro)
Cco04g2215 765 SUPERFAMILY EF-hand 703 762 IPR011992 -
Cco04g2215 765 MobiDBLite consensus disorder prediction 411 433 - -
Cco04g2215 765 Gene3D - 674 765 - -
Cco04g2215 765 Gene3D - 610 673 - -
Cco04g2215 765 SUPERFAMILY Voltage-gated potassium channels 595 701 - -
Cco04g2215 765 Gene3D - 477 577 - -
Cco04g2215 765 SUPERFAMILY Voltage-gated potassium channels 480 566 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g2215 Cco-Chr4:35740941 Cco09g2323 Cco-Chr9:37433552 3.20E-50 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g2215 K05389 - csv:101220017 764.992