Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g2216 | ATGTCAGATGAAATGTTTAAAGATCTTTTTTATGGCGGGATGGATGAGTACGAGTCTCTAGTGAGAGCTTTTGGGGAATCATCGGATTATTCGAATAATAATAATGAAATTTCGGGGACTCCCATAAATTCTTGTGGATCTTTGTCGTCTTCGGATGCTGGAGCTGAGGAGGATGATTCTGTGAAAGAGAGGGATAAGCAGATCGACAAAGAACATGTTGAAGATGGAGGAGAGAGTTCTAAGGCTGGATCAGGTAAATCAAAGAAGAAAGTAGAGAAGAAAGAGAGAGAAGCGAGAGTTGCTTTCATGACGAAGAGCGAGGTTGATCATCTTGAAGATGGATATAGATGGAGAAAATATGGACAGAAGGCTGTTAAGAACAGTGCTTATCCTAGGAGCTATTATAGATGCACAACTCAAAAATGCGGAGTGAAAAAACGAGTAGAGAGATCCTTTGAAGATCCATCCATTGTAATTACAACTTACGAAGGTCAACACAACCACCCAGTCCCGACGACGCTAAGAGGAAACTTATCGGCGGCGAGCAGCGCGTTGTCACCATCCATGCTAGCACCAATGCCAGTGGTCGGTGGCATTGGGTTTCTACCTACAGAGTTGTTGAGTAATTCTTCCAGCAACAATAACCAGGCCATCAATGGTGGTGCATCCGTTTATTCACATAACAACTTTGACTACACTTATAATGAGCGACGATCAGAATATGGGCTTCTGCAGGATATTTTTCCAACTCCTTCATCGTTCTTCAACCGGCAATTGTGA | 780 | 42.82 | MSDEMFKDLFYGGMDEYESLVRAFGESSDYSNNNNEISGTPINSCGSLSSSDAGAEEDDSVKERDKQIDKEHVEDGGESSKAGSGKSKKKVEKKEREARVAFMTKSEVDHLEDGYRWRKYGQKAVKNSAYPRSYYRCTTQKCGVKKRVERSFEDPSIVITTYEGQHNHPVPTTLRGNLSAASSALSPSMLAPMPVVGGIGFLPTELLSNSSSNNNQAINGGASVYSHNNFDYTYNERRSEYGLLQDIFPTPSSFFNRQL | 259 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 35774089 | 35775672 | + | CcPI632755_04g022160.1 | Cco04g2216 | 177441 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g2216 | 259 | MobiDBLite | consensus disorder prediction | 55 | 97 | - | - | |
Cco04g2216 | 259 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 55 | 209 | IPR044810 | GO:0003700(InterPro) | |
Cco04g2216 | 259 | FunFam | WRKY transcription factor 57 | 96 | 171 | - | - | |
Cco04g2216 | 259 | Pfam | WRKY DNA -binding domain | 112 | 169 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco04g2216 | 259 | SMART | WRKY_cls | 111 | 170 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco04g2216 | 259 | ProSiteProfiles | WRKY domain profile. | 106 | 171 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco04g2216 | 259 | SUPERFAMILY | WRKY DNA-binding domain | 103 | 171 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco04g2216 | 259 | MobiDBLite | consensus disorder prediction | 27 | 54 | - | - | |
Cco04g2216 | 259 | Gene3D | WRKY domain | 95 | 172 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco04g2216 | 259 | MobiDBLite | consensus disorder prediction | 27 | 97 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g2216 | Cco-Chr4:35774089 | Cco09g2450 | Cco-Chr9:38670080 | 6.90E-42 | dispersed | |
Cco10g1135 | Cco-Chr10:23779848 | Cco04g2216 | Cco-Chr4:35774089 | 5.00E-14 | dispersed | |
Cco11g0738 | Cco-Chr11:8139357 | Cco04g2216 | Cco-Chr4:35774089 | 5.60E-26 | transposed | |
Cco02g1967 | Cco-Chr2:32622667 | Cco04g2216 | Cco-Chr4:35774089 | 2.30E-36 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59160 | PF03106 | WRKY | 8.00E-26 | CL0274 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g2216 | - | - | - | 0.0 |