Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g2216 ATGTCAGATGAAATGTTTAAAGATCTTTTTTATGGCGGGATGGATGAGTACGAGTCTCTAGTGAGAGCTTTTGGGGAATCATCGGATTATTCGAATAATAATAATGAAATTTCGGGGACTCCCATAAATTCTTGTGGATCTTTGTCGTCTTCGGATGCTGGAGCTGAGGAGGATGATTCTGTGAAAGAGAGGGATAAGCAGATCGACAAAGAACATGTTGAAGATGGAGGAGAGAGTTCTAAGGCTGGATCAGGTAAATCAAAGAAGAAAGTAGAGAAGAAAGAGAGAGAAGCGAGAGTTGCTTTCATGACGAAGAGCGAGGTTGATCATCTTGAAGATGGATATAGATGGAGAAAATATGGACAGAAGGCTGTTAAGAACAGTGCTTATCCTAGGAGCTATTATAGATGCACAACTCAAAAATGCGGAGTGAAAAAACGAGTAGAGAGATCCTTTGAAGATCCATCCATTGTAATTACAACTTACGAAGGTCAACACAACCACCCAGTCCCGACGACGCTAAGAGGAAACTTATCGGCGGCGAGCAGCGCGTTGTCACCATCCATGCTAGCACCAATGCCAGTGGTCGGTGGCATTGGGTTTCTACCTACAGAGTTGTTGAGTAATTCTTCCAGCAACAATAACCAGGCCATCAATGGTGGTGCATCCGTTTATTCACATAACAACTTTGACTACACTTATAATGAGCGACGATCAGAATATGGGCTTCTGCAGGATATTTTTCCAACTCCTTCATCGTTCTTCAACCGGCAATTGTGA 780 42.82 MSDEMFKDLFYGGMDEYESLVRAFGESSDYSNNNNEISGTPINSCGSLSSSDAGAEEDDSVKERDKQIDKEHVEDGGESSKAGSGKSKKKVEKKEREARVAFMTKSEVDHLEDGYRWRKYGQKAVKNSAYPRSYYRCTTQKCGVKKRVERSFEDPSIVITTYEGQHNHPVPTTLRGNLSAASSALSPSMLAPMPVVGGIGFLPTELLSNSSSNNNQAINGGASVYSHNNFDYTYNERRSEYGLLQDIFPTPSSFFNRQL 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35774089 35775672 + CcPI632755_04g022160.1 Cco04g2216 177441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g2216 259 MobiDBLite consensus disorder prediction 55 97 - -
Cco04g2216 259 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 55 209 IPR044810 GO:0003700(InterPro)
Cco04g2216 259 FunFam WRKY transcription factor 57 96 171 - -
Cco04g2216 259 Pfam WRKY DNA -binding domain 112 169 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco04g2216 259 SMART WRKY_cls 111 170 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco04g2216 259 ProSiteProfiles WRKY domain profile. 106 171 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco04g2216 259 SUPERFAMILY WRKY DNA-binding domain 103 171 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco04g2216 259 MobiDBLite consensus disorder prediction 27 54 - -
Cco04g2216 259 Gene3D WRKY domain 95 172 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco04g2216 259 MobiDBLite consensus disorder prediction 27 97 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g2216 Cco-Chr4:35774089 Cco09g2450 Cco-Chr9:38670080 6.90E-42 dispersed
Cco10g1135 Cco-Chr10:23779848 Cco04g2216 Cco-Chr4:35774089 5.00E-14 dispersed
Cco11g0738 Cco-Chr11:8139357 Cco04g2216 Cco-Chr4:35774089 5.60E-26 transposed
Cco02g1967 Cco-Chr2:32622667 Cco04g2216 Cco-Chr4:35774089 2.30E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59160 PF03106 WRKY 8.00E-26 CL0274 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g2216 - - - 0.0