Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g2218 ATGGCTGCCTCTACAATGGCTCTCTCCTCCCCATCTCTGGCCGGCAAGGCCGTGAAGCTCTCCCCCAACGCCCCTGAAATTCAGGGCAATGGAAGAGTCAGCATGAGGAAGACGGCCAGCAAGCAAGTTTCCTCCGGCAGCCCATGGTACGGCCCCGACCGTGTCAAGTACTTGGGCCCATTCTCCGGCGAGCCACCGTCCTACTTGACCGGAGAGTTCCCCGGTGACTACGGCTGGGACACTGCTGGACTTTCAGCCGATCCCGAGACCTTCGCCAAGAACCGTGAGCTCGAAGTGATCCACTCCAGATGGGCCATGCTTGGAGCTTTGGGCTGTGTCTTCCCTGAGCTTTTGTCCCGCAATGGTGTGAAGTTTGGTGAGGCTGTGTGGTTCAAGGCTGGATCTCAGATCTTCAGCGAGGGAGGGCTTGACTACTTGGGAAACCCCAGCTTGATCCACGCACAGAGCATTTTGGCCATCTGGGCCACTCAGGTTGTGTTGATGGGCGCCGTCGAGGGCTACCGTATTGCCGGCGGCCCGCTCGGGGAGGTGACTGACCCCATCTACCCAGGTGGAAGCTTCGACCCATTGGGTCTGGCTGATGACCCAGAGGCCTTCGCTGAATTGAAGGTTAAGGAGCTCAAGAATGGAAGGTTGGCCATGTTCTCCATGTTTGGATTCTTTGTTCAAGCCATTGTCACTGGAAAGGGTCCATTGGAGAATTTGGCTGACCACCTTGCTGATCCAGTCAACAACAATGCCTGGGCCTATGCCACAAACTTTGTTCCTGGAAAGTGA 798 56.64 MAASTMALSSPSLAGKAVKLSPNAPEIQGNGRVSMRKTASKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35799355 35800152 - CcPI632755_04g022180.1 Cco04g2218 177443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g2218 265 FunFam Chlorophyll a-b binding protein, chloroplastic 56 258 - -
Cco04g2218 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
Cco04g2218 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
Cco04g2218 265 Pfam Chlorophyll A-B binding protein 65 232 IPR022796 -
Cco04g2218 265 MobiDBLite consensus disorder prediction 19 46 - -
Cco04g2218 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 4 265 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0753 Cco-Chr3:7801593 Cco04g2218 Cco-Chr4:35799355 8.70E-149 dispersed
Cco03g0754 Cco-Chr3:7807338 Cco04g2218 Cco-Chr4:35799355 4.20E-14 dispersed
Cco04g2218 Cco-Chr4:35799355 Cco10g0603 Cco-Chr10:8051347 1.50E-95 dispersed
Cco04g2218 Cco-Chr4:35799355 Cco04g2219 Cco-Chr4:35801754 2.00E-153 tandem
Cco02g0294 Cco-Chr2:2676465 Cco04g2218 Cco-Chr4:35799355 2.20E-120 transposed
Cco10g1167 Cco-Chr10:24263188 Cco04g2218 Cco-Chr4:35799355 1.90E-135 transposed
Cco11g1967 Cco-Chr11:32142907 Cco04g2218 Cco-Chr4:35799355 4.90E-44 transposed
Cco02g1970 Cco-Chr2:32643188 Cco04g2218 Cco-Chr4:35799355 6.50E-144 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g2218 K08912 - csv:101221671 528.865