Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g2220 ATGGCTTCTAGCGTCAGTTTAGCCATTTTCATGATAGGTAGTTTTGTTCTAGTAAGGGTTCTGTCTACCCAACACCAATTCGCCATGGAAGTTGAATTGGAAGCCTTGAAGGCCTTCAAGAGTTGCATCCAGTTCGATCCATTGGGAGCACTTGCAGATTGGACGGACCGTAATCCCCACTGCAATTGGTCTGGCATTATATGTGACCCTGATTCCAAAAGGGTAATTTCGATTACTTTGATTGATCAGCAGCTTGAAGGCGAGATTTCTCCATTTATTGGGAACCTCTCAGCTCTCCAGGTTCTTGATTTAACTCAGAATTCGTTTACCGGGCAGATTCCAGGTGAATTGGGTTCGTGTTCCAACCTTTCTCAGCTCACTCTTTACAGAAACTTTCTTTCAGGTCACATTCCACTCCAGTTGGGAAACCTTGGGTTCCTGCAAGATGTTGATTTGGGAAATAACTTCTTAAAGGGAAGCATTCCTGATAGCATTTGCAATTGCACAAACTTGTTAGCATTTGGTGTAATATTTAATAATCTCACGGGAAGAATCCCATCAAACATAGGAAACTTAGTCGATCTTCAAATTCTGGTTGCATACGCCAACAAGCTTGAAGGTTCCATTCCCATCTCTATTGGCAAACTAGGTGCACTGCAAACTCTAGATCTTAGCCAGAACAACTTGTCTGGGAATATACCAATGGAGATGGGGAATTTGTTGAATTTGGAGTATATTTCATTGTTTGAGAATGCTTTGGCTGGGAAAATTCCTGAGGAGATAGGTAAATGTGAGAAGCTTCTTTCTTTGGAACTATACAACAATAAGTTCAGTGGTCCAATTCCTTCACAATTAGGCTCTCTGATTCACTTACAAACCTTGCGTCTGTATACAAATAGATTAAATTCCACTATACCACAATCTCTCTTACAGTTGAAAGGTTTAACCCATTTGCTTCTCTCAGAGAACGAGTTAAGTGGAACTGTATCTTCTGATATTGGATCTTTGAGATCATTGCAGGTTTTGACTCTTCACTCGAATAGATTTTTCGGGGTGATTCCTTTGTCTTTGACAAACTTGTCAAAACTCACACATTTGTCTCTGAGCTTCAATTTTTTCACTGGTGAGATTCCGTCCAATTTAGGTCTGCTTTATAATCTGAAGAGATTGACATTGAGCAGCAATCTCCTAGCAGGTTCAATTCCATCTAGTATTATCAATTGCACCCAGCTTTCTATAATTGATCTTTCATTCAATAGGCTGACAGGAAAAATACCTATGGGATACGGGAAGTTGCAGAATCTTACTTCCCTCTTGCTTGGATCAAATAGAATTTTTGGTGAAATCCCAGATGACTTATTTAATTGCTCATCCCTTGAGGTTGTAGACCTGGCTCTAAACAATTTCACTGGATTATTAAAATCCAGTATCGGCAAGCTTTCCAATATTCGAGTTTTCAGAGCCGCATCAAATTCATTTTCTGGGGAAATTCCAGGTGACATTGGCAACTTAAGCAGGCTCAACACTTTAGTACTTGCAGAAAATAAATTTGCAGGTCAAATTCCTGGGGAATTGTCTAAGCTTTCTCTTCTTCAAGCTCTTTCTTTGCATGACAATGCATTGGAAGGAAGGATTCCTGAAAAAATATTTCATCTGAAACAACTGGTTCATCTTCATCTGCAGAACAACAAGTTCATAGGTCCAATTCCAGATGCCATCTCAAGACTAGAGTTTCTTTCGTATTTGGACCTTCATGGAAACATGCTTAATGGATCAGTTCCTAAAAGTATGAGGAATCTTCATCGACTTGTGATGTTAGATCTGTCCCGCAACCATCTATCTGGATCAATTCCTGGGGTTTTAATCTCAGGTATGAAAGATATGCAACTGTACATGAACTTGTCATACAATTTCCTGGTAGGAGCTATTCCAGCTGAGCTTGGGTTGTTGCAAATGATACAATCCATTGACTTCTCAAACAACAATCTCACTGGGATTATTCCAGCCACGATCGGAGGTTGTAGAAATTTGTTCTTTCTTGATCTGTCAGGAAATCATCTTTCCGGTATGCTTCCAGGTAAAGCTTTTACCGGAATGAATATGCTCATGAGCTTGAACCTTTCAAGGAACAAAATAGCTGGTGAAATCCCAGAAGAGTTAGCAAATCTGGAGCACTTGTACTATTTGGACCTTTCTCAGAACCAGTTCAATGGCAGAATCCCTCAAAAACTTTCAGCTCTGAAGTATGTTAACCTTTCCTTTAATCAACTAGAAGGTCCTGTTCCAGACACCGGAATATTTCAAAAGATAAATGCTTCAAGCTTGATTGGAAATCCTGCTCTTTGTGGATCCAAGTCCTTCGCTCCTTGTGGAAAGAAGTATTTGCGACATCTATCAAAAAAGACCTTACTAATTCTCATAACCCTTGGATCTATTATTGTAGTCTTAGCTATAATTTTCTTAATTCTAGGCCTCAACCGATATCGTAAGCTTGAGAAATCTAAAAGTATTGAAAATTCTGAACCATCATTGGATTATGCATGTACCCTTAAGAGGTTTGATAAGAAGGATATGGAGATTGCAACAGAATACTTCAGCGATGAAAACATTCTAGGTTCCAGTACTTTAAGCACTGTCTACCGGGGTCAACTAGACAACGGACAGATTGTAGCTGTAAAAAGATTGAATTTGCAATATTTCTCTGCCGAATCAGATGATTACTTCAGTAGAGAAATCAAGATTCTTTGTCAACTTAGACATAGGAATTTGGTGAAAGTACTCGGATATGCTTGGGAAAGCCAGAAGCTGAAGGCTATCGTGCTTGAATACATGGAAAATGGGAACTTGGATAGAATAATACATAACCCTGGAACAGATCAAATGAGTTGTTCATTGTCAAAGAGGGTTGATATTTGTGTTTCTGTTGCTTGTGGGATGCAATACCTGCATCATGGATATGATTTTCCCATCATTCACTGCGACTTGAAACCTTCAAACATCCTTCTTGATGGAGACTGGGTAGCCCATGTGAGTGATTTTGGAACTGCTAGAGTGTTGGGGGTGCAAAGCCAAGACACAAGCAGCATTTCCTCTTCAGCAGCTTTTGAAGGCAGTATCGGATATTTGGCTCCAGAGTTTGCATACATGGGGAAAGTGACAACAAAAGTAGATGTGTTCAGTTTTGGTGTAATACTGATGGAATTTCTGACAAAGAAGAGGCCAACTGCCACCATTGAAGCTCATGGACTCCCAATCAGCTTGCAGCAACTGGTAGAGAGAGCTCTAGCAAATGGAAAGGAAGAACTTAGTCAAGTTTTGGATCCTGTGCTGGTCTTGAATGATTCAAAGGAGCAAGGGAGGTTAGAAGAACTGCTCAAATTAGCACTAAGCTGTACCGCCCCAAATCCTGATAATAGACCTGACATGAATTTAATTCTGCCTATCCTTCTGAAGTTGCGCAGAGATGAATAG 3471 39.99 MASSVSLAIFMIGSFVLVRVLSTQHQFAMEVELEALKAFKSCIQFDPLGALADWTDRNPHCNWSGIICDPDSKRVISITLIDQQLEGEISPFIGNLSALQVLDLTQNSFTGQIPGELGSCSNLSQLTLYRNFLSGHIPLQLGNLGFLQDVDLGNNFLKGSIPDSICNCTNLLAFGVIFNNLTGRIPSNIGNLVDLQILVAYANKLEGSIPISIGKLGALQTLDLSQNNLSGNIPMEMGNLLNLEYISLFENALAGKIPEEIGKCEKLLSLELYNNKFSGPIPSQLGSLIHLQTLRLYTNRLNSTIPQSLLQLKGLTHLLLSENELSGTVSSDIGSLRSLQVLTLHSNRFFGVIPLSLTNLSKLTHLSLSFNFFTGEIPSNLGLLYNLKRLTLSSNLLAGSIPSSIINCTQLSIIDLSFNRLTGKIPMGYGKLQNLTSLLLGSNRIFGEIPDDLFNCSSLEVVDLALNNFTGLLKSSIGKLSNIRVFRAASNSFSGEIPGDIGNLSRLNTLVLAENKFAGQIPGELSKLSLLQALSLHDNALEGRIPEKIFHLKQLVHLHLQNNKFIGPIPDAISRLEFLSYLDLHGNMLNGSVPKSMRNLHRLVMLDLSRNHLSGSIPGVLISGMKDMQLYMNLSYNFLVGAIPAELGLLQMIQSIDFSNNNLTGIIPATIGGCRNLFFLDLSGNHLSGMLPGKAFTGMNMLMSLNLSRNKIAGEIPEELANLEHLYYLDLSQNQFNGRIPQKLSALKYVNLSFNQLEGPVPDTGIFQKINASSLIGNPALCGSKSFAPCGKKYLRHLSKKTLLILITLGSIIVVLAIIFLILGLNRYRKLEKSKSIENSEPSLDYACTLKRFDKKDMEIATEYFSDENILGSSTLSTVYRGQLDNGQIVAVKRLNLQYFSAESDDYFSREIKILCQLRHRNLVKVLGYAWESQKLKAIVLEYMENGNLDRIIHNPGTDQMSCSLSKRVDICVSVACGMQYLHHGYDFPIIHCDLKPSNILLDGDWVAHVSDFGTARVLGVQSQDTSSISSSAAFEGSIGYLAPEFAYMGKVTTKVDVFSFGVILMEFLTKKRPTATIEAHGLPISLQQLVERALANGKEELSQVLDPVLVLNDSKEQGRLEELLKLALSCTAPNPDNRPDMNLILPILLKLRRDE 1156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35802959 35806639 - CcPI632755_04g022200.1 Cco04g2220 177445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g2220 1156 Gene3D Ribonuclease Inhibitor 28 180 IPR032675 -
Cco04g2220 1156 ProSiteProfiles Protein kinase domain profile. 865 1149 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g2220 1156 ProSitePatterns Serine/Threonine protein kinases active-site signature. 990 1002 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g2220 1156 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 182 429 - -
Cco04g2220 1156 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 944 1156 - -
Cco04g2220 1156 Pfam Protein kinase domain 866 1143 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g2220 1156 SUPERFAMILY L domain-like 552 789 - -
Cco04g2220 1156 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 826 943 - -
Cco04g2220 1156 Pfam Leucine rich repeat N-terminal domain 32 69 IPR013210 -
Cco04g2220 1156 Gene3D Phosphorylase Kinase; domain 1 827 943 - -
Cco04g2220 1156 SUPERFAMILY L domain-like 32 301 - -
Cco04g2220 1156 FunFam Leucine-rich repeat receptor-like protein kinase 701 792 - -
Cco04g2220 1156 Gene3D Ribonuclease Inhibitor 698 797 IPR032675 -
Cco04g2220 1156 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 29 181 - -
Cco04g2220 1156 Gene3D Ribonuclease Inhibitor 181 237 IPR032675 -
Cco04g2220 1156 Gene3D Ribonuclease Inhibitor 630 697 IPR032675 -
Cco04g2220 1156 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 430 698 - -
Cco04g2220 1156 Gene3D Ribonuclease Inhibitor 429 521 IPR032675 -
Cco04g2220 1156 Gene3D Ribonuclease Inhibitor 522 629 IPR032675 -
Cco04g2220 1156 Gene3D Ribonuclease Inhibitor 328 428 IPR032675 -
Cco04g2220 1156 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 696 1151 IPR050647 -
Cco04g2220 1156 Gene3D Ribonuclease Inhibitor 238 327 IPR032675 -
Cco04g2220 1156 SUPERFAMILY Protein kinase-like (PK-like) 842 1149 IPR011009 -
Cco04g2220 1156 Gene3D Transferase(Phosphotransferase) domain 1 944 1156 - -
Cco04g2220 1156 Pfam Leucine Rich Repeat 434 456 IPR001611 GO:0005515(InterPro)
Cco04g2220 1156 Pfam Leucine Rich Repeat 338 360 IPR001611 GO:0005515(InterPro)
Cco04g2220 1156 Pfam Leucine Rich Repeat 386 408 IPR001611 GO:0005515(InterPro)
Cco04g2220 1156 Pfam Leucine Rich Repeat 99 120 IPR001611 GO:0005515(InterPro)
Cco04g2220 1156 Pfam Leucine Rich Repeat 267 288 IPR001611 GO:0005515(InterPro)
Cco04g2220 1156 Pfam Leucine Rich Repeat 147 168 IPR001611 GO:0005515(InterPro)
Cco04g2220 1156 Pfam Leucine Rich Repeat 219 240 IPR001611 GO:0005515(InterPro)
Cco04g2220 1156 Pfam Leucine Rich Repeat 362 382 IPR001611 GO:0005515(InterPro)
Cco04g2220 1156 CDD STKc_IRAK 871 1152 - -
Cco04g2220 1156 SMART serkin_6 865 1149 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g2220 1156 SUPERFAMILY L domain-like 323 618 - -
Cco04g2220 1156 Pfam Leucine rich repeat 554 613 IPR001611 GO:0005515(InterPro)
Cco04g2220 1156 Pfam Leucine rich repeat 691 736 IPR001611 GO:0005515(InterPro)
Cco04g2220 1156 Pfam Leucine rich repeat 632 687 IPR001611 GO:0005515(InterPro)
Cco04g2220 1156 SMART LRR_typ_2 384 408 IPR003591 -
Cco04g2220 1156 SMART LRR_typ_2 144 168 IPR003591 -
Cco04g2220 1156 SMART LRR_typ_2 650 673 IPR003591 -
Cco04g2220 1156 SMART LRR_typ_2 96 120 IPR003591 -
Cco04g2220 1156 SMART LRR_typ_2 336 359 IPR003591 -
Cco04g2220 1156 SMART LRR_typ_2 432 456 IPR003591 -
Cco04g2220 1156 SMART LRR_typ_2 360 383 IPR003591 -
Cco04g2220 1156 SMART LRR_typ_2 600 624 IPR003591 -
Cco04g2220 1156 SMART LRR_typ_2 576 599 IPR003591 -
Cco04g2220 1156 SMART LRR_typ_2 744 769 IPR003591 -
Cco04g2220 1156 SMART LRR_typ_2 699 723 IPR003591 -
Cco04g2220 1156 SMART LRR_typ_2 216 240 IPR003591 -
Cco04g2220 1156 SMART LRR_typ_2 288 312 IPR003591 -
Cco04g2220 1156 SMART LRR_typ_2 528 552 IPR003591 -
Cco04g2220 1156 SMART LRR_typ_2 674 698 IPR003591 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1768 Cco-Chr4:32640785 Cco04g2220 Cco-Chr4:35802959 5.00E-09 dispersed
Cco04g2220 Cco-Chr4:35802959 Cco10g2121 Cco-Chr10:34459737 1.10E-54 dispersed
Cco04g2220 Cco-Chr4:35802959 Cco03g0690 Cco-Chr3:7120633 7.60E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86799 PF00069 Pkinase 4.40E-43 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g2220 K13420 - csv:101215973 1974.52