Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g2225 ATGGCCCAACAAGACCAAGAACACCAAAGCCAACACCGACGCCGAGCTATGACCAATGGCTTCGATTCTTCATCTGTAAACTGCAAAATTCAAGGTCGAAGAGAAATGGCGGGACTGAGAAGACTGGCGCAATTGAAACCCATAGCCGAAGAAGCATTGGCCGGAACAGTTTTCGTAGCGAAGTTCCTCTGTGGCCTTCATGTCGTCAACACTTACATCTGCACAGCCGCTCTCACCTATGGTCCCAGCATGCTCCCTACTCTGAACCTAACCGGTGATTTCATCGTGGCCGAACGACTCTCCACTCGCTTTGGCAGAGTCGGCGTCGGAGACATTGTCCTCGTGAGGTCTCCTGAAAACCCTCGTAAAGTAATGGCGAAGCGCTTGATGGGCATGGAGGGTGATTCTGTTACCTATGTTGTAGACCCAAAGAACAGTGATTGGAGCGAAACTGTTGTGGTTCCTAAGGGGCATGTTTGGATAGAGGGAGATAATATCTATGATTCAAATGATTCCAGAAATTTTGGGGCCGTTCCATATGGTCTTCTGCAAGGGAAAATATTTTGGAGGATATGGCCACCTGAAAGGTTTGGACCTTTGGAGAAGAGGAAATCAAACGAGGCAGTCTTGTGA 633 48.66 MAQQDQEHQSQHRRRAMTNGFDSSSVNCKIQGRREMAGLRRLAQLKPIAEEALAGTVFVAKFLCGLHVVNTYICTAALTYGPSMLPTLNLTGDFIVAERLSTRFGRVGVGDIVLVRSPENPRKVMAKRLMGMEGDSVTYVVDPKNSDWSETVVVPKGHVWIEGDNIYDSNDSRNFGAVPYGLLQGKIFWRIWPPERFGPLEKRKSNEAVL 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35825041 35827098 + CcPI632755_04g022250.1 Cco04g2225 177450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g2225 210 PRINTS Bacterial leader peptidase 1 (S26A) family signature 72 88 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
Cco04g2225 210 PRINTS Bacterial leader peptidase 1 (S26A) family signature 154 173 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
Cco04g2225 210 PRINTS Bacterial leader peptidase 1 (S26A) family signature 125 137 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
Cco04g2225 210 MobiDBLite consensus disorder prediction 1 15 - -
Cco04g2225 210 FunFam Inner membrane protease subunit 1 70 199 - -
Cco04g2225 210 Gene3D Umud Fragment, subunit A 68 205 - -
Cco04g2225 210 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 43 202 IPR052064 GO:0006627(PANTHER)|GO:0042720(PANTHER)
Cco04g2225 210 CDD S26_SPase_I 81 187 IPR019533 GO:0004252(InterPro)|GO:0006465(InterPro)
Cco04g2225 210 SUPERFAMILY LexA/Signal peptidase 71 200 IPR036286 -
Cco04g2225 210 MobiDBLite consensus disorder prediction 1 24 - -
Cco04g2225 210 Pfam Signal peptidase, peptidase S26 65 140 IPR019533 GO:0004252(InterPro)|GO:0006465(InterPro)
Cco04g2225 210 Pfam Signal peptidase, peptidase S26 147 192 IPR019533 GO:0004252(InterPro)|GO:0006465(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g2225 Cco-Chr4:35825041 Cco07g1110 Cco-Chr7:24659483 1.60E-52 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g2225 K09647 - csv:101209167 323.939