Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco04g2230 | ATGATGGCTGTGAATTTAAACGAAAGAGGTATCAGGGGAATAGTATTTACCCTTGAGACGCTTCGGAAGAATCGTGCCCATGAGCTGAAGGTGATTTTTGGGGCTTTTTCGCTTTTGCCATTGCCCTGCGACCTGCGCCGTTGTGCTCTCCGTCGGTCTTCAATTGGCAGCGCTCAGCCCAGACTCGGGATGGCCAATCAGAAGCTCTTCGGTCTCTCAATTCAAGGTTCTCTCTCACTCGCTGTCTCTCTCCGCCGGTTCGTCGACGAAGGAGCAAAGCAGAGGAAAGTTAGGGACAAGGAAATGGACGTTGGCGAAGAAATTAGGGCAGCTCACAAGCGAGATTTTCTGGAATTCCTTGAACAGGATGTTGGGAAAGGAATTTACATGGACGAGATCAAAGCCATGATTAATCATAAGCGACATCGGCTCATAATCAACATTTCTGATCTTCATTCTTTCAGAGATCTTGGCCCCAGGGTGCTCAGGAATCCCAGTGAGTACATTCAGCCATTCTGTGACGCGGTCACAGATACTGCTCGCAGTATCGACCCAAAATACCTTAAGGAAGGAGAGCAAGTTTTGGTGGGCTTTGAGGGCCCCTTTGTTTCTCGCCGTGTCACTCCCAGGGAACTTCTCTCTCAGTTTATTGGCTCCATGGTCTGCGTTGAGGGCATTGTTACCAAATGTTCTCTTGTTAGACCAAAAGTTGTCAAAAGTGTCCATTTCTGCCCCACAACTGGAGGTTTTACCAGCCGTGAATACCGTGACATTACATCCAACATGGGCTTGCCCACAGGATCTGTGTATCCCACAAGGGATGACAATGGCAACTTGTTGGTTACTGAGTATGGCCTGTGTAGATATAAAGATCATCAGACCTTATCAATGCAAGAAATGCCTGAGAATTCAGCACCTGGTCAGCTTCCACGAACAGTGGATATCATAGTTGAGGACGACTTAGTTGACTGTTGCAAGCCAGGTGATCGTGTTGCTATTGTAGGAATATATAAAGCTCTTCCAGGAAAAAGCAAGGGCAGCTTGAATGGAGTGTTCAGGACTGTTCTTGTTGCTAACAATGTTTCTCTACTAAACAAAGAGGCTAATGCGCCAATATATAGTCCCGAGGACTTGAAGAACATTAAAAAGATAGCGGAAAGAGATGACACATTTGACCTTCTCGGAAATTCTCTTGCACCTTCCATATATGGACATTCATGGATAAAAAAAGCCGTGATACTATTGATGCTTAGTGGAGTGGAGAAGAACTTGAAGAATGGCACCCACTTAAGAGGTGATATCAACATGATGATGGTTGGTGATCCTTCTGTTGCCAAGTCACAACTTTTAAGGGCAATCATGAATATTGCACCCTTAGCAATATCCACAACAGGCCGTGGTTCTTCTGGTGTCGGGTTAACTGCTGCTGTTACATCAGATCAGGAAACAGGAGAACGAAGGCTAGAAGCTGGTGCAATGGTTCTTGCTGATCGAGGTGTTGTCTGTATTGATGAGTTTGACAAGATGAATGATCAAGATAGGGTTGCAATACATGAAGTTATGGAGCAGCAGACTGTGACTATTGCCAAAGCTGGCATTCATGCTTCACTGAATGCTCGGTGCAGTGTGGTAGCAGCTGCAAATCCCATATATGGATCTTACGATCGATCGTTGACACCAACAAAGAATATAGGTCTTCCAGACTCTCTACTCTCTCGATTTGATCTACTGTTTATTGTATTGGATCAAATGGATCCCGATATTGATCGTCATATTTCGGAGCATGTGTTGCGTATGCACCGGTATCGTTCAGTACTTGATGGAGGTGAGGCTGGGGGCTCAGTGTATGGAAGAGAGGATGAAGCTGAAGCTGACACTTCTGTCTTTGTCAAGTATAATAGAATGCTTCATGGGAAAAAGACCGAACGTGGTCGGAAGCGCGATACTCTCACCATCAAGTTTCTTAAGAAGTACATTCATTATGCTAAGCATAGGATACAACCCGATCTAACTGATGAGGCATCTGAGCAAATTGCAACAGCATATGCAGAACTTAGAAATTCAACTTCAAATGCGAAGACTGGAGGAACTCTTCCAATTACCGCGAGAACCCTGGAAACCATTATACGACTCTCAACTGCCCATGCGAAATTAAAGTTGAGTAGAAAGGTTTCCAAATCTGATGTTGAGGCTGCCTTGAAAGTTCTTAATTTTGCCATATATCATAAAGAGTTGACTGACATGGAAGAGCGTGAGCAAGAAAGAGAGAAAGAATTGGAAAGGAAACGCAGAGCTGAACATCAAACAGTGGAAAATGATAGACCAGAACGTAGTACCAAAAGAAGAGAGGAGGGCTCAAGGACAGATACCATGGAAATCGATGATCCTCCTTCTGAACCTGTACTTGATCTGTCTGCAGAAAGAATAGAAGCATTCAATTCTTTGTTTGGTCAGCACATGCGTGCAAACCACCTGGATGTTATATCTATTGCAGACATTGAGAATGTCGTTAATGCTGCAGCAGATACTCATTTCACTACCGCTGAAATAATGTTGCTCTTGCAGAGACTGCAAGATGATAACAGGGTAATGATAGCTGATAGCACGGTGCATATGATATCATGA | 2625 | 44.34 | MMAVNLNERGIRGIVFTLETLRKNRAHELKVIFGAFSLLPLPCDLRRCALRRSSIGSAQPRLGMANQKLFGLSIQGSLSLAVSLRRFVDEGAKQRKVRDKEMDVGEEIRAAHKRDFLEFLEQDVGKGIYMDEIKAMINHKRHRLIINISDLHSFRDLGPRVLRNPSEYIQPFCDAVTDTARSIDPKYLKEGEQVLVGFEGPFVSRRVTPRELLSQFIGSMVCVEGIVTKCSLVRPKVVKSVHFCPTTGGFTSREYRDITSNMGLPTGSVYPTRDDNGNLLVTEYGLCRYKDHQTLSMQEMPENSAPGQLPRTVDIIVEDDLVDCCKPGDRVAIVGIYKALPGKSKGSLNGVFRTVLVANNVSLLNKEANAPIYSPEDLKNIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVILLMLSGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGSYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRHISEHVLRMHRYRSVLDGGEAGGSVYGREDEAEADTSVFVKYNRMLHGKKTERGRKRDTLTIKFLKKYIHYAKHRIQPDLTDEASEQIATAYAELRNSTSNAKTGGTLPITARTLETIIRLSTAHAKLKLSRKVSKSDVEAALKVLNFAIYHKELTDMEEREQEREKELERKRRAEHQTVENDRPERSTKRREEGSRTDTMEIDDPPSEPVLDLSAERIEAFNSLFGQHMRANHLDVISIADIENVVNAAADTHFTTAEIMLLLQRLQDDNRVMIADSTVHMIS | 874 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 35857063 | 35863814 | + | CcPI632755_04g022300.1 | Cco04g2230 | 177455 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco04g2230 | 874 | Gene3D | - | 210 | 340 | IPR012340 | - | |
| Cco04g2230 | 874 | ProSitePatterns | MCM family signature. | 499 | 507 | IPR018525 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro) | |
| Cco04g2230 | 874 | SMART | mcm | 205 | 741 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cco04g2230 | 874 | Pfam | MCM N-terminal domain | 113 | 199 | IPR027925 | - | |
| Cco04g2230 | 874 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 570 | 578 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cco04g2230 | 874 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 491 | 505 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cco04g2230 | 874 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 431 | 446 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cco04g2230 | 874 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 519 | 532 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cco04g2230 | 874 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 543 | 555 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cco04g2230 | 874 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 105 | 821 | IPR031327 | GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006271(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:1902975(PANTHER) | |
| Cco04g2230 | 874 | Pfam | MCM AAA-lid domain | 654 | 737 | IPR041562 | - | |
| Cco04g2230 | 874 | Pfam | MCM OB domain | 210 | 340 | IPR033762 | - | |
| Cco04g2230 | 874 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 400 | 753 | IPR027417 | - | |
| Cco04g2230 | 874 | Gene3D | - | 372 | 762 | IPR027417 | - | |
| Cco04g2230 | 874 | SUPERFAMILY | Nucleic acid-binding proteins | 114 | 358 | IPR012340 | - | |
| Cco04g2230 | 874 | Gene3D | - | 105 | 200 | - | - | |
| Cco04g2230 | 874 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 308 | 320 | IPR008046 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cco04g2230 | 874 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 592 | 602 | IPR008046 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cco04g2230 | 874 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 728 | 743 | IPR008046 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cco04g2230 | 874 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 559 | 569 | IPR008046 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cco04g2230 | 874 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 282 | 296 | IPR008046 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cco04g2230 | 874 | Pfam | MCM P-loop domain | 378 | 600 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cco04g2230 | 874 | FunFam | DNA helicase | 236 | 290 | - | - | |
| Cco04g2230 | 874 | SMART | AAA_5 | 432 | 585 | IPR003593 | GO:0016887(InterPro) | |
| Cco04g2230 | 874 | Gene3D | - | 236 | 290 | - | - | |
| Cco04g2230 | 874 | ProSiteProfiles | MCM family domain profile. | 390 | 596 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cco04g2230 | 874 | Coils | Coil | 742 | 768 | - | - | |
| Cco04g2230 | 874 | CDD | MCM3 | 393 | 739 | - | - | |
| Cco04g2230 | 874 | FunFam | DNA helicase | 106 | 205 | - | - | |
| Cco04g2230 | 874 | MobiDBLite | consensus disorder prediction | 748 | 799 | - | - | |
| Cco04g2230 | 874 | MobiDBLite | consensus disorder prediction | 748 | 794 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco04g2230 | Cco-Chr4:35857063 | Cco09g0502 | Cco-Chr9:4399185 | 1.40E-94 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco04g2230 | K02541 | - | csv:101210889 | 1461.05 |